Properties
| Property Name | Value |
|---|
| TranscriptId | 590480 |
| Track | FilteredModels2 |
| ProteinId | 590394 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_11 | supercontig | scaffold_11:627556..629817 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5812 ID=mRNA_5812|Name=jgi.p|Nanoce1779_2|590394|organism=Nannochloropsis oceanica|type=mRNA|length=1550bp
AGGACCATTTGAAGTATGCCGAGCAGCAAGCGGGACGTGCTCTTTGACAT
GGGCTTAGTTGCAGCCTCTGCCTCCACAGGTAAGTCATTTGCTGTTCGGG
GGGAAGGTGGAATTTTAGATTGTGGGTTTATTTCGTCTACTCTGGCTGGG
TTAGGGTTGTGCCTTGCCCTGTGAGCAAACCTAAAAAGCATTTCCTCAGG
CACGGGCTTGCCTTGCTTGGTCTTTCTGGCTCTGCCAGATCAGAAAGAGC
TTCAGAGTATGTAAGAAAGATCATGGAGTGGAGGGTCTTGTCATCTTGCC
ATATGTCCGTGCACGCCTGACTCTGTCAGAGAAGCCGGAAATCGTGATAG
AATTGCGAACACTACCCCTCTCTGCCCTCGTTTGACGATGGCAATGGCTC
GAGAGCTGCGTGACGCCATGGTACTCGCGAGGCATTCGACCCCTCACTTT
CTCTGCTGTTGAGATGGCTGATTGGCCGTACTTCCAGGTACCACCAAGTC
TACACCATCATGAATATCAAACAACCATTGCAGTATACTGGAGCCTGATC
AAGCTGCAACGTCGCTACTGGCGCCTCAAGGGCAAAGCCAAGGCCCGCAT
TCCTCAAACCCTGCTCCATTGTACATGGGCGCGGGAGATCCACATCGCCA
CACAAGCCGCTCTTGCTGCGGGGGCGACGCTTAAGAAAGTGTCGGAACAA
GACTTGAGCGCGAAACTGGTCAGTTACAAAGGAGAGATTGATTTAGTCAC
GGAAACGGACAAGGAGAACGAGAAGGCGATTGTCTCCCTGTTGTCCAAAA
ACTTCCCGACCCACTTGTTCATTGGCGAGGAGGAGGCGTCTGCGAATGGG
GTAATTCCTGATTTGACATCTGCCCCTACTTGGCTCATCGACCCTATCGA
CGGTACGACCAATTTCGTGCACGGCTGTCCTTTTTCCTGCGTCTCCATCG
CCTTGGCCGTTGACCAAACGGTGGTGGTCGGCGTCGTGTTTGACCCATTT
AAGGACGAGCTTTTTCTCGCTGCGAAAGGTCACGGGGCATTTCTGAATGG
GAAGCAACTGAAACTCGCAGGCACCACCACCGACCTCTCCAAAGCTGTCA
TTATTCAAGAATACGGCTACGAGCGCACGGACGCGGGCATCAAGAAATTG
CTTCAAGTCACGGAACGCCTCCTCCGTGGCAACGTCCAAGCGGTGCGTCA
GTTCGGCTCAGGTGTGCTGGACCTGGCGTATGTAGCCGCCGGGAGGGTGG
ACGGTGTCTACTGTGGCGTAGCAGGGGATGGTTGGAAGCCGTGGGATTAC
GCGGCAGGGTCTGTCGTGGCAGTGGAGGCGGGTGCGACCATGAGTGATTT
AAGGGGGGAGGAATTCGACGTGTTTGGAACCTCGATGGTGTGTGCGGGAA
GTGAGGCGATCGCACGCAAGCTTGTTGGAGCGGCGAGGGAGTAAGGAAAG
GCTTGGACAGGAGGGACGGACGGAGGGACGGAGGGAGGGACGGAGGGAGA
GGAAGGTACGACACTTGATTTAATGCGTGCACATGACAATGAAACGAAAT back to topprotein sequence of jgi.p|Nanoce1779_2|590394 >mRNA_5812-protein ID=mRNA_5812-protein|Name=jgi.p|Nanoce1779_2|590394|organism=Nannochloropsis oceanica|type=polypeptide|length=327bp
MADWPYFQVPPSLHHHEYQTTIAVYWSLIKLQRRYWRLKGKAKARIPQTL
LHCTWAREIHIATQAALAAGATLKKVSEQDLSAKLVSYKGEIDLVTETDK
ENEKAIVSLLSKNFPTHLFIGEEEASANGVIPDLTSAPTWLIDPIDGTTN
FVHGCPFSCVSIALAVDQTVVVGVVFDPFKDELFLAAKGHGAFLNGKQLK
LAGTTTDLSKAVIIQEYGYERTDAGIKKLLQVTERLLRGNVQAVRQFGSG
VLDLAYVAAGRVDGVYCGVAGDGWKPWDYAAGSVVAVEAGATMSDLRGEE
FDVFGTSMVCAGSEAIARKLVGAARE* back to topmRNA from alignment at scaffold_11:627556..629817+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5812 ID=mRNA_5812|Name=jgi.p|Nanoce1779_2|590394|organism=Nannochloropsis oceanica|type=mRNA|length=2262bp|location=Sequence derived from alignment at scaffold_11:627556..629817+ (Nannochloropsis oceanica)
AGGACCATTTGAAGTATGCCGAGCAGCAAGCGGGACGTGCTCTTTGACAT
GGGCTTAGTTGCAGCCTCTGCCTCCACAGGTAAGTCATTTGCTGTTCGGG
GGGAAGGTGGAATTTTAGATTGTGGGTTTATTTCGTCTACTCTGGCTGGG
TTAGGGTTGTGCCTTGCCCTGTGAGCAAACCTAAAAAGCATTTCCTCAGG
CACGGGCTTGCCTTGCTTGGTCTTTCTGGCTCTGCCAGATCAGAAAGAGC
TTCAGAGTATGTAAGAAAGATCATGGAGTGGAGGGTCTTGTCATCTTGCC
ATATGTCCGTGCACGCCTGACTCTGTCAGAGAAGCCGGAAATCGTGATAG
AATTGCGAACACTACCCCTCTCTGCCCTCGTTTGACGATGGCAATGGCTC
GAGAGCTGCGTGACGCCATGGTACTCGCGAGGCATTCGACCCCTCACTTT
CTCTGCTGTTGAGATGGCTGATTGGCCGTACTTCCAGGTACCACCAAGTC
TACACCATCATGAATATCAAACAAGTACGCATTTGCTCCGATATATCGAC
GGGTGAAGCATGTCGTTGAGAGGAAAAGAGAAGAGTCCCAGTCGGTCCCA
AAATCATGCGATATCGCATTTAAGAAAAGGTTTTCGAACGCAGCAGCAGC
CTGCTTAAACACTGTGCTTTTACGTTTCAGCTCCGGGGGACGAGTAATAG
TGTAATTTCGAGCATGAGTGAGTTGGTCGGGACTCATCTAACCGCCTCCC
TTTGCCTCCTCCCATCCTCCTTTCCCCTCTCTCCCAGCCATTGCAGTATA
CTGGAGCCTGATCAAGCTGCAACGTCGCTACTGGCGCCTCAAGGGCAAAG
CCAAGGCCCGCATTCCTCAAACCCTGCTCCATTGTACATGGGCGCGGGAG
ATCCACATCGCCACACAAGCCGCTCTTGCTGCGGGGGCGACGCTTAAGAA
AGTGTCGGAACAAGACTTGAGCGCGAAACTGGTCAGTTACAAAGGAGAGA
TTGATTTAGTCACGGAAACGGACAAGGAGAACGAGAAGGCGATTGTCTCC
CTGTTGTCCAAAAACTTCCCGACCCACTTGTTCATTGGCGAGGAGGAGGC
GTCTGCGAATGGGGTAATTCCTGATTTGACATCTGCCCCTACTTGGCTCA
TCGACCCTATCGACGGTGGGTTTCCTGTCCATCCCTCTCTCGCTCCCCTC
TCTCCTCTCTTGCAAGGGCCATACGTGTGAGTGCAAAACACGTACTTTTA
ACGCCGATGTATACGATTGTGCATCAACCATTTCCCTCCCTCATTCAACC
AAACACCACCACATGCATACATGCAGGTACGACCAATTTCGTGCACGGCT
GTCCTTTTTCCTGCGTCTCCATCGCCTTGGCCGTTGACCAAACGGTGGTG
GTCGGCGTCGTGTTTGACCCATTTAAGGACGAGCTTTTTCTCGCTGCGAA
AGGTCACGGGGCATTTCTGAATGGGAAGCAACTGAAACTCGCAGGTAAGG
AAGGGAGGGAGGGAGGGAGGGAGGGGAAAGAGGGAAGGGGAGGCGCAGGG
GCCGGGATAGGGCTTCACAGGATGCACGCCTTGGGAAAGAGTACTCAGGT
ATTTTCATTCTCATCCACTCTTCTTTTCTTTCCCACGTACACAAAGACAC
ATCACCGATCAAAAAGATGGCTCGGAGCGGATCAAAGCCAGCATCCCAAC
ACGCGTTGTCATTTCCACTTCCTCAATCTTTTCTCTCTCCGCCCTCTCAC
TCTCCCCCTCCTCTTTCCCCCACCCTCCGCAGGCACCACCACCGACCTCT
CCAAAGCTGTCATTATTCAAGAATACGGCTACGAGCGCACGGACGCGGGC
ATCAAGAAATTGCTTCAAGTCACGGAACGCCTCCTCCGTGGCAACGTCCA
AGCGGTGCGTCAGTTCGGCTCAGGTGTGCTGGACCTGGCGTATGTAGCCG
CCGGGAGGGTGGACGGTGTCTACTGTGGCGTAGCAGGGGATGGTTGGAAG
CCGTGGGATTACGCGGCAGGGTCTGTCGTGGCAGTGGAGGCGGGTGCGAC
CATGAGTGATTTAAGGGGGGAGGAATTCGACGTGTTTGGAACCTCGATGG
TGTGTGCGGGAAGTGAGGCGATCGCACGCAAGCTTGTTGGAGCGGCGAGG
GAGTAAGGAAAGGCTTGGACAGGAGGGACGGACGGAGGGACGGAGGGAGG
GACGGAGGGAGAGGAAGGTACGACACTTGATTTAATGCGTGCACATGACA
ATGAAACGAAAT back to topCoding sequence (CDS) from alignment at scaffold_11:627556..629817+ >mRNA_5812 ID=mRNA_5812|Name=jgi.p|Nanoce1779_2|590394|organism=Nannochloropsis oceanica|type=CDS|length=3924bp|location=Sequence derived from alignment at scaffold_11:627556..629817+ (Nannochloropsis oceanica)
ATGGCTGATTGGCCGTACTTCCAGGTACCACCAAGTCTACACCATCATGA
ATATCAAACAACCATTGCAGTATACTGGAGCCTGATCAAGCTGCAACGTC
GCTACTGGCGCCTCAAGGGCAAAGCCAAGGCCCGCATTCCTCAAACCCTG
CTCCATTGTACATGGGCGCGGGAGATCCACATCGCCACACAAGCCGCTCT
TGCTGCGGGGGCGACGCTTAAGAAAGTGTCGGAACAAGACTTGAGCGCGA
AACTGGTCAGTTACAAAGGAGAGATTGATTTAGTCACGGAAACGGACAAG
GAGAACGAGAAGGCGATTGTCTCCCTGTTGTCCAAAAACTTCCCGACCCA
CTTGTTCATTGGCGAGGAGGAGGCGTCTGCGAATGGGGTAATTCCTGATT
TGACATCTGCCCCTACTTGGCTCATCGACCCTATCGACGGTACGACCAAT
TTCGTGCACGGCTGTCCTTTTTCCTGCGTCTCCATCGCCTTGGCCGTTGA
CCAAACGGTGGTGGTCGGCGTCGTGTTTGACCCATTTAAGGACGAGCTTT
TTCTCGCTGCGAAAGGTCACGGGGCATTTCTGAATGGGAAGCAACTGAAA
CTCGCAGGCACCACCACCGACCTCTCCAAAGCTGTCATTATTCAAGAATA
CGGCTACGAGCGCACGGACGCGGGCATCAAGAAATTGCTTCAAGTCACGG
AACGCCTCCTCCGTGGCAACGTCCAAGCGGTGCGTCAGTTCGGCTCAGGT
GTGCTGGACCTGGCGTATGTAGCCGCCGGGAGGGTGGACGGTGTCTACTG
TGGCGTAGCAGGGGATGGTTGGAAGCCGTGGGATTACGCGGCAGGGTCTG
TCGTGGCAGTGGAGGCGGGTGCGACCATGAGTGATTTAAGGGGGGAGGAA
TTCGACGTGTTTGGAACCTCGATGGTGTGTGCGGGAAGTGAGGCGATCGC
ACGCAAGCTTGTTGGAGCGGCGAGGGAGTAAATGGCTGATTGGCCGTACT
TCCAGGTACCACCAAGTCTACACCATCATGAATATCAAACAACCATTGCA
GTATACTGGAGCCTGATCAAGCTGCAACGTCGCTACTGGCGCCTCAAGGG
CAAAGCCAAGGCCCGCATTCCTCAAACCCTGCTCCATTGTACATGGGCGC
GGGAGATCCACATCGCCACACAAGCCGCTCTTGCTGCGGGGGCGACGCTT
AAGAAAGTGTCGGAACAAGACTTGAGCGCGAAACTGGTCAGTTACAAAGG
AGAGATTGATTTAGTCACGGAAACGGACAAGGAGAACGAGAAGGCGATTG
TCTCCCTGTTGTCCAAAAACTTCCCGACCCACTTGTTCATTGGCGAGGAG
GAGGCGTCTGCGAATGGGGTAATTCCTGATTTGACATCTGCCCCTACTTG
GCTCATCGACCCTATCGACGGTACGACCAATTTCGTGCACGGCTGTCCTT
TTTCCTGCGTCTCCATCGCCTTGGCCGTTGACCAAACGGTGGTGGTCGGC
GTCGTGTTTGACCCATTTAAGGACGAGCTTTTTCTCGCTGCGAAAGGTCA
CGGGGCATTTCTGAATGGGAAGCAACTGAAACTCGCAGGCACCACCACCG
ACCTCTCCAAAGCTGTCATTATTCAAGAATACGGCTACGAGCGCACGGAC
GCGGGCATCAAGAAATTGCTTCAAGTCACGGAACGCCTCCTCCGTGGCAA
CGTCCAAGCGGTGCGTCAGTTCGGCTCAGGTGTGCTGGACCTGGCGTATG
TAGCCGCCGGGAGGGTGGACGGTGTCTACTGTGGCGTAGCAGGGGATGGT
TGGAAGCCGTGGGATTACGCGGCAGGGTCTGTCGTGGCAGTGGAGGCGGG
TGCGACCATGAGTGATTTAAGGGGGGAGGAATTCGACGTGTTTGGAACCT
CGATGGTGTGTGCGGGAAGTGAGGCGATCGCACGCAAGCTTGTTGGAGCG
GCGAGGGAGTAAATGGCTGATTGGCCGTACTTCCAGGTACCACCAAGTCT
ACACCATCATGAATATCAAACAACCATTGCAGTATACTGGAGCCTGATCA
AGCTGCAACGTCGCTACTGGCGCCTCAAGGGCAAAGCCAAGGCCCGCATT
CCTCAAACCCTGCTCCATTGTACATGGGCGCGGGAGATCCACATCGCCAC
ACAAGCCGCTCTTGCTGCGGGGGCGACGCTTAAGAAAGTGTCGGAACAAG
ACTTGAGCGCGAAACTGGTCAGTTACAAAGGAGAGATTGATTTAGTCACG
GAAACGGACAAGGAGAACGAGAAGGCGATTGTCTCCCTGTTGTCCAAAAA
CTTCCCGACCCACTTGTTCATTGGCGAGGAGGAGGCGTCTGCGAATGGGG
TAATTCCTGATTTGACATCTGCCCCTACTTGGCTCATCGACCCTATCGAC
GGTACGACCAATTTCGTGCACGGCTGTCCTTTTTCCTGCGTCTCCATCGC
CTTGGCCGTTGACCAAACGGTGGTGGTCGGCGTCGTGTTTGACCCATTTA
AGGACGAGCTTTTTCTCGCTGCGAAAGGTCACGGGGCATTTCTGAATGGG
AAGCAACTGAAACTCGCAGGCACCACCACCGACCTCTCCAAAGCTGTCAT
TATTCAAGAATACGGCTACGAGCGCACGGACGCGGGCATCAAGAAATTGC
TTCAAGTCACGGAACGCCTCCTCCGTGGCAACGTCCAAGCGGTGCGTCAG
TTCGGCTCAGGTGTGCTGGACCTGGCGTATGTAGCCGCCGGGAGGGTGGA
CGGTGTCTACTGTGGCGTAGCAGGGGATGGTTGGAAGCCGTGGGATTACG
CGGCAGGGTCTGTCGTGGCAGTGGAGGCGGGTGCGACCATGAGTGATTTA
AGGGGGGAGGAATTCGACGTGTTTGGAACCTCGATGGTGTGTGCGGGAAG
TGAGGCGATCGCACGCAAGCTTGTTGGAGCGGCGAGGGAGTAAATGGCTG
ATTGGCCGTACTTCCAGGTACCACCAAGTCTACACCATCATGAATATCAA
ACAACCATTGCAGTATACTGGAGCCTGATCAAGCTGCAACGTCGCTACTG
GCGCCTCAAGGGCAAAGCCAAGGCCCGCATTCCTCAAACCCTGCTCCATT
GTACATGGGCGCGGGAGATCCACATCGCCACACAAGCCGCTCTTGCTGCG
GGGGCGACGCTTAAGAAAGTGTCGGAACAAGACTTGAGCGCGAAACTGGT
CAGTTACAAAGGAGAGATTGATTTAGTCACGGAAACGGACAAGGAGAACG
AGAAGGCGATTGTCTCCCTGTTGTCCAAAAACTTCCCGACCCACTTGTTC
ATTGGCGAGGAGGAGGCGTCTGCGAATGGGGTAATTCCTGATTTGACATC
TGCCCCTACTTGGCTCATCGACCCTATCGACGGTACGACCAATTTCGTGC
ACGGCTGTCCTTTTTCCTGCGTCTCCATCGCCTTGGCCGTTGACCAAACG
GTGGTGGTCGGCGTCGTGTTTGACCCATTTAAGGACGAGCTTTTTCTCGC
TGCGAAAGGTCACGGGGCATTTCTGAATGGGAAGCAACTGAAACTCGCAG
GCACCACCACCGACCTCTCCAAAGCTGTCATTATTCAAGAATACGGCTAC
GAGCGCACGGACGCGGGCATCAAGAAATTGCTTCAAGTCACGGAACGCCT
CCTCCGTGGCAACGTCCAAGCGGTGCGTCAGTTCGGCTCAGGTGTGCTGG
ACCTGGCGTATGTAGCCGCCGGGAGGGTGGACGGTGTCTACTGTGGCGTA
GCAGGGGATGGTTGGAAGCCGTGGGATTACGCGGCAGGGTCTGTCGTGGC
AGTGGAGGCGGGTGCGACCATGAGTGATTTAAGGGGGGAGGAATTCGACG
TGTTTGGAACCTCGATGGTGTGTGCGGGAAGTGAGGCGATCGCACGCAAG
CTTGTTGGAGCGGCGAGGGAGTAA back to top
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