jgi.p|Nanoce1779_2|591058, mRNA_5002 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591058
Unique NamemRNA_5002
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length508
Alignment locationscaffold_12:216295..216802 +

Link to JBrowse

Properties
Property NameValue
TranscriptId591144
TrackFilteredModels2
ProteinId591058
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:216295..216802 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591058gene_5002Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591058mRNA_5002-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5002CDS_5002Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5002 ID=mRNA_5002|Name=jgi.p|Nanoce1779_2|591058|organism=Nannochloropsis oceanica|type=mRNA|length=508bp
CTTTGCTATCAATCCGCGAATGCCATGGCATCTCTTCTTCTTCTTTTCCC
TCTTACGCTATTCTTCTTTTTTTTCAGTGTCAACTCTCTCGAAGCTCTTT
CTCTAACTCTTTTGGCTTCTCCTCGCACTCAGTCCGCATCCATCAGTCCC
TCCCTTCCTCCCTCCACCACCACCCCCATCACCACCACGTCAGCCGAAAA
CGAAAACAGGAGGCGAGAGCACTCATCTGTTCCCTTTTTCATCTTTATGT
ACGCTCGCTTTACCCCGAGGCTTCACGCCATGCCCTCCTCGTTACGTCTC
CCTCCCTCGACACGAAGGCACACACAATCATATCACATCACATCCACACA
CACTCAAAGACCTACACGCACACACATCACACATCCACCACAACCCTAAT
CCATAATGTACCATCAGACCAATGCCCGCACGTCTTGAAACACAAATAGC
TCTCCTCTCTCTTTCCCTCCCTCCCTCCCTCTCCTCCAACCCTATGCCTT
GAGCTTCT
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protein sequence of jgi.p|Nanoce1779_2|591058

>mRNA_5002-protein ID=mRNA_5002-protein|Name=jgi.p|Nanoce1779_2|591058|organism=Nannochloropsis oceanica|type=polypeptide|length=125bp
MASLLLLFPLTLFFFFFSVNSLEALSLTLLASPRTQSASISPSLPPSTTT
PITTTSAENENRRREHSSVPFFIFMYARFTPRLHAMPSSLRLPPSTRRHT
QSYHITSTHTQRPTRTHITHPPQP*
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mRNA from alignment at scaffold_12:216295..216802+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5002 ID=mRNA_5002|Name=jgi.p|Nanoce1779_2|591058|organism=Nannochloropsis oceanica|type=mRNA|length=508bp|location=Sequence derived from alignment at scaffold_12:216295..216802+ (Nannochloropsis oceanica)
CTTTGCTATCAATCCGCGAATGCCATGGCATCTCTTCTTCTTCTTTTCCC
TCTTACGCTATTCTTCTTTTTTTTCAGTGTCAACTCTCTCGAAGCTCTTT
CTCTAACTCTTTTGGCTTCTCCTCGCACTCAGTCCGCATCCATCAGTCCC
TCCCTTCCTCCCTCCACCACCACCCCCATCACCACCACGTCAGCCGAAAA
CGAAAACAGGAGGCGAGAGCACTCATCTGTTCCCTTTTTCATCTTTATGT
ACGCTCGCTTTACCCCGAGGCTTCACGCCATGCCCTCCTCGTTACGTCTC
CCTCCCTCGACACGAAGGCACACACAATCATATCACATCACATCCACACA
CACTCAAAGACCTACACGCACACACATCACACATCCACCACAACCCTAAT
CCATAATGTACCATCAGACCAATGCCCGCACGTCTTGAAACACAAATAGC
TCTCCTCTCTCTTTCCCTCCCTCCCTCCCTCTCCTCCAACCCTATGCCTT
GAGCTTCT
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Coding sequence (CDS) from alignment at scaffold_12:216295..216802+

>mRNA_5002 ID=mRNA_5002|Name=jgi.p|Nanoce1779_2|591058|organism=Nannochloropsis oceanica|type=CDS|length=375bp|location=Sequence derived from alignment at scaffold_12:216295..216802+ (Nannochloropsis oceanica)
ATGGCATCTCTTCTTCTTCTTTTCCCTCTTACGCTATTCTTCTTTTTTTT
CAGTGTCAACTCTCTCGAAGCTCTTTCTCTAACTCTTTTGGCTTCTCCTC
GCACTCAGTCCGCATCCATCAGTCCCTCCCTTCCTCCCTCCACCACCACC
CCCATCACCACCACGTCAGCCGAAAACGAAAACAGGAGGCGAGAGCACTC
ATCTGTTCCCTTTTTCATCTTTATGTACGCTCGCTTTACCCCGAGGCTTC
ACGCCATGCCCTCCTCGTTACGTCTCCCTCCCTCGACACGAAGGCACACA
CAATCATATCACATCACATCCACACACACTCAAAGACCTACACGCACACA
CATCACACATCCACCACAACCCTAA
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Synonyms
Publications