jgi.p|Nanoce1779_2|591239, mRNA_5051 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591239
Unique NamemRNA_5051
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1498
Alignment locationscaffold_12:333494..335109 -

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Properties
Property NameValue
TranscriptId591325
TrackFilteredModels2
ProteinId591239
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:333494..335109 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591239gene_5051Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591239mRNA_5051-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5051CDS_5051Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5051 ID=mRNA_5051|Name=jgi.p|Nanoce1779_2|591239|organism=Nannochloropsis oceanica|type=mRNA|length=1498bp
CAGCCCTCTGCACTGCTCGGCCGCCTTCCCAGTGCTATCGTTGCCCGTTA
CCCACACGTGCTCCTCCCATTTCAAGTGCTGTCTTTCCAGCGTCAGCCCA
GCGGGTTCTCTCACCACCCCGAAGGCAGTATGGTTGTCCGGCAGAAGCGC
AGCGAGGTGTGCAAGAGCAATGGCACGAGCGATAGCAGCAAACGCCCCAG
GGCATTGAAAGAAGAGGAAGAGGAGACGGGGCGGCAGCAGGACAACCTGC
ATCCCCGTCACCAACAGCCACATACCTCCACCATCACCTCCTCTTCCTCA
ACTTTTATCTCTTCTTCCTCGTCGTCCTTCTCTTCTTCCGTAAAATTGAG
GTCCCAAAGCCCCGAAACGACTGTCCCCAGACATCAACAAGGGCGTCTCT
CCTCCTTCGCCTCCTCTTCCTCTTTTCCCGACTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCGCGGCTTCCTCCTCGGAAGACGAAGGCGAGACGGA
CGAGGGAGAGAGGGAACAGATCGATTACCGGCCCAAACTTGAACTCCTAC
AAGAAGGAGACCGGGGGACGTTGACTGGAATGCCGGTCCGTCTCTACGCC
GACGGTATTTTTGATTTGTTTCACTTTGGCCATGCTAAGGCCTTGGAGCA
GGCAAAAAAGCTGTATCCTCACACACATTTGATGGTGGGGTGTTGCAGTG
ATTCCGTTACTCACCAGTACAAAGGGATTACGGTCATGTCGGAAGACGAG
CGGTATGAGAGCTTGAGGCATTGCAAGTGGGTGGATGAGGTGGTGGAGGA
CGCACCGTGGGTTGTCAATGACGAGTTTTTGGCAAAGCATAATATAGATT
ATGTGTGCCATGATGCGTTGCCGTACGCGGATACGTCGGGGCAGGCGGAT
GACGGGGACGTGTATTCGCACTTGAAGCGGAACGGGAAGTTCTTGGAGAC
GCAGAGGACGGACGGCATCTCCACGTCGGACATAATTAACCGAGTGATCG
TGCACTACGACGACTACGTCCTCCGGCAGCTCCAACGGGGCTACAGCGCC
AAGGAGATGAATGTACCCCAATGGAAGGAGACGACTCTGCTAACCAGAAA
ATACTTGCATGACGTTGCCACTACCACCACCAAGACCATAGGGGATTTTC
AGCACTCCTTCATTAGCCTTTTTAATCGGAATTCCGACATTCGCTGTACG
TTGAGGAAGAGGAGGAAGGAGACCTGGCATCGGATGAGCTCGCTTTTCCG
CACACCTTTTATAGCCGCCGAAGTTGAGGGCATGCAGAGCGTTGGCCCGG
TGAGCAAGAAAATGAAGCGGTAAAAGGAGTAAGGTGTGAACGAGGAGAAG
GAAACAATGTGTTCGCGTATTTCCAATTTTTTGTGACTTCTTTTGCCCTA
CCTTTCTGCGACGAAGAGCCAAAGTGCAGGGGAAGAAAAACTTCAAAAGG
AGTCCTGTTCAACCAAAAGCTGGAGGGAGGGAAGGAGGGAGGGCGGGA
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protein sequence of jgi.p|Nanoce1779_2|591239

>mRNA_5051-protein ID=mRNA_5051-protein|Name=jgi.p|Nanoce1779_2|591239|organism=Nannochloropsis oceanica|type=polypeptide|length=398bp
MVVRQKRSEVCKSNGTSDSSKRPRALKEEEEETGRQQDNLHPRHQQPHTS
TITSSSSTFISSSSSSFSSSVKLRSQSPETTVPRHQQGRLSSFASSSSFP
DSSSSSSSSSSSAASSSEDEGETDEGEREQIDYRPKLELLQEGDRGTLTG
MPVRLYADGIFDLFHFGHAKALEQAKKLYPHTHLMVGCCSDSVTHQYKGI
TVMSEDERYESLRHCKWVDEVVEDAPWVVNDEFLAKHNIDYVCHDALPYA
DTSGQADDGDVYSHLKRNGKFLETQRTDGISTSDIINRVIVHYDDYVLRQ
LQRGYSAKEMNVPQWKETTLLTRKYLHDVATTTTKTIGDFQHSFISLFNR
NSDIRCTLRKRRKETWHRMSSLFRTPFIAAEVEGMQSVGPVSKKMKR*
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mRNA from alignment at scaffold_12:333494..335109-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5051 ID=mRNA_5051|Name=jgi.p|Nanoce1779_2|591239|organism=Nannochloropsis oceanica|type=mRNA|length=1616bp|location=Sequence derived from alignment at scaffold_12:333494..335109- (Nannochloropsis oceanica)
CAGCCCTCTGCACTGCTCGGCCGCCTTCCCAGTGCTATCGTTGCCCGTTA
CCCACACGTGCTCCTCCCATTTCAAGTGCTGTCTTTCCAGCGTCAGCCCA
GCGGGTTCTCTCACCACCCCGAAGGCAGTATGGTTGTCCGGCAGAAGCGC
AGCGAGGTGTGCAAGAGCAATGGCACGAGCGATAGCAGCAAACGCCCCAG
GGCATTGAAAGAAGAGGAAGAGGAGACGGGGCGGCAGCAGGACAACCTGC
ATCCCCGTCACCAACAGCCACATACCTCCACCATCACCTCCTCTTCCTCA
ACTTTTATCTCTTCTTCCTCGTCGTCCTTCTCTTCTTCCGTAAAATTGAG
GTCCCAAAGCCCCGAAACGACTGTCCCCAGACATCAACAAGGGCGTCTCT
CCTCCTTCGCCTCCTCTTCCTCTTTTCCCGACTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCGCGGCTTCCTCCTCGGAAGACGAAGGCGAGACGGA
CGAGGGAGAGAGGGAACAGATCGATTACCGGCCCAAACTTGAACTCCTAC
AAGAAGGAGACCGGGGGACGTTGACTGGAATGCCGGTCCGTCTCTACGCC
GACGGTATTTTTGATTTGTTTCACTTTGGCCATGCTAAGGCCTTGGAGCA
GGCAAAAAAGCTGTATCCTCACACACATTTGATGGTGGGGTGTTGCAGTG
ATTCCGTTACTCACCAGTACAAAGGGATTACGGTCATGTCGGAAGACGAG
CGGTATGAGAGCTTGAGGCATTGCAAGTGGGTGGATGAGGTGGTGGAGGA
CGCACCGTGGGTTGTCAATGACGAGTTTTTGGCAAAGCATAATATAGATT
ATGTGTGCCATGATGCGTTGCCGTACGCGGATACGTCGGGGCAGGCGGAT
GACGGGGACGTGTATTCGCACTTGAAGCGGAACGGGAAGTTCTTGGAGAC
GCAGAGGACGGACGGCATCTCCACGTCGGACATAATTAACCGAGGTACGT
AGTGTAAGAAGGGAGGGGAGGAAGAGGGGAGCGTGATGTTCATCTTAATG
TATATTCCTGATTTTGATCCCTCCTCCCCTTCTTCCCTCCCTCCTTCCTC
GCCGTCCTTCAGTGATCGTGCACTACGACGACTACGTCCTCCGGCAGCTC
CAACGGGGCTACAGCGCCAAGGAGATGAATGTACCCCAATGGAAGGAGAC
GACTCTGCTAACCAGAAAATACTTGCATGACGTTGCCACTACCACCACCA
AGACCATAGGGGATTTTCAGCACTCCTTCATTAGCCTTTTTAATCGGAAT
TCCGACATTCGCTGTACGTTGAGGAAGAGGAGGAAGGAGACCTGGCATCG
GATGAGCTCGCTTTTCCGCACACCTTTTATAGCCGCCGAAGTTGAGGGCA
TGCAGAGCGTTGGCCCGGTGAGCAAGAAAATGAAGCGGTAAAAGGAGTAA
GGTGTGAACGAGGAGAAGGAAACAATGTGTTCGCGTATTTCCAATTTTTT
GTGACTTCTTTTGCCCTACCTTTCTGCGACGAAGAGCCAAAGTGCAGGGG
AAGAAAAACTTCAAAAGGAGTCCTGTTCAACCAAAAGCTGGAGGGAGGGA
AGGAGGGAGGGCGGGA
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Coding sequence (CDS) from alignment at scaffold_12:333494..335109-

>mRNA_5051 ID=mRNA_5051|Name=jgi.p|Nanoce1779_2|591239|organism=Nannochloropsis oceanica|type=CDS|length=2388bp|location=Sequence derived from alignment at scaffold_12:333494..335109- (Nannochloropsis oceanica)
TGATCGTGCACTACGACGACTACGTCCTCCGGCAGCTCCAACGGGGCTAC
AGCGCCAAGGAGATGAATGTACCCCAATGGAAGGAGACGACTCTGCTAAC
CAGAAAATACTTGCATGACGTTGCCACTACCACCACCAAGACCATAGGGG
ATTTTCAGCACTCCTTCATTAGCCTTTTTAATCGGAATTCCGACATTCGC
TGTACGTTGAGGAAGAGGAGGAAGGAGACCTGGCATCGGATGAGCTCGCT
TTTCCGCACACCTTTTATAGCCGCCGAAGTTGAGGGCATGCAGAGCGTTG
GCCCGGTGAGCAAGAAAATGAAGCGGTAAATGGTTGTCCGGCAGAAGCGC
AGCGAGGTGTGCAAGAGCAATGGCACGAGCGATAGCAGCAAACGCCCCAG
GGCATTGAAAGAAGAGGAAGAGGAGACGGGGCGGCAGCAGGACAACCTGC
ATCCCCGTCACCAACAGCCACATACCTCCACCATCACCTCCTCTTCCTCA
ACTTTTATCTCTTCTTCCTCGTCGTCCTTCTCTTCTTCCGTAAAATTGAG
GTCCCAAAGCCCCGAAACGACTGTCCCCAGACATCAACAAGGGCGTCTCT
CCTCCTTCGCCTCCTCTTCCTCTTTTCCCGACTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCGCGGCTTCCTCCTCGGAAGACGAAGGCGAGACGGA
CGAGGGAGAGAGGGAACAGATCGATTACCGGCCCAAACTTGAACTCCTAC
AAGAAGGAGACCGGGGGACGTTGACTGGAATGCCGGTCCGTCTCTACGCC
GACGGTATTTTTGATTTGTTTCACTTTGGCCATGCTAAGGCCTTGGAGCA
GGCAAAAAAGCTGTATCCTCACACACATTTGATGGTGGGGTGTTGCAGTG
ATTCCGTTACTCACCAGTACAAAGGGATTACGGTCATGTCGGAAGACGAG
CGGTATGAGAGCTTGAGGCATTGCAAGTGGGTGGATGAGGTGGTGGAGGA
CGCACCGTGGGTTGTCAATGACGAGTTTTTGGCAAAGCATAATATAGATT
ATGTGTGCCATGATGCGTTGCCGTACGCGGATACGTCGGGGCAGGCGGAT
GACGGGGACGTGTATTCGCACTTGAAGCGGAACGGGAAGTTCTTGGAGAC
GCAGAGGACGGACGGCATCTCCACGTCGGACATAATTAACCGAGTGATCG
TGCACTACGACGACTACGTCCTCCGGCAGCTCCAACGGGGCTACAGCGCC
AAGGAGATGAATGTACCCCAATGGAAGGAGACGACTCTGCTAACCAGAAA
ATACTTGCATGACGTTGCCACTACCACCACCAAGACCATAGGGGATTTTC
AGCACTCCTTCATTAGCCTTTTTAATCGGAATTCCGACATTCGCTGTACG
TTGAGGAAGAGGAGGAAGGAGACCTGGCATCGGATGAGCTCGCTTTTCCG
CACACCTTTTATAGCCGCCGAAGTTGAGGGCATGCAGAGCGTTGGCCCGG
TGAGCAAGAAAATGAAGCGGTAAATGGTTGTCCGGCAGAAGCGCAGCGAG
GTGTGCAAGAGCAATGGCACGAGCGATAGCAGCAAACGCCCCAGGGCATT
GAAAGAAGAGGAAGAGGAGACGGGGCGGCAGCAGGACAACCTGCATCCCC
GTCACCAACAGCCACATACCTCCACCATCACCTCCTCTTCCTCAACTTTT
ATCTCTTCTTCCTCGTCGTCCTTCTCTTCTTCCGTAAAATTGAGGTCCCA
AAGCCCCGAAACGACTGTCCCCAGACATCAACAAGGGCGTCTCTCCTCCT
TCGCCTCCTCTTCCTCTTTTCCCGACTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCGCGGCTTCCTCCTCGGAAGACGAAGGCGAGACGGACGAGGG
AGAGAGGGAACAGATCGATTACCGGCCCAAACTTGAACTCCTACAAGAAG
GAGACCGGGGGACGTTGACTGGAATGCCGGTCCGTCTCTACGCCGACGGT
ATTTTTGATTTGTTTCACTTTGGCCATGCTAAGGCCTTGGAGCAGGCAAA
AAAGCTGTATCCTCACACACATTTGATGGTGGGGTGTTGCAGTGATTCCG
TTACTCACCAGTACAAAGGGATTACGGTCATGTCGGAAGACGAGCGGTAT
GAGAGCTTGAGGCATTGCAAGTGGGTGGATGAGGTGGTGGAGGACGCACC
GTGGGTTGTCAATGACGAGTTTTTGGCAAAGCATAATATAGATTATGTGT
GCCATGATGCGTTGCCGTACGCGGATACGTCGGGGCAGGCGGATGACGGG
GACGTGTATTCGCACTTGAAGCGGAACGGGAAGTTCTTGGAGACGCAGAG
GACGGACGGCATCTCCACGTCGGACATAATTAACCGAG
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Synonyms
Publications