jgi.p|Nanoce1779_2|591805, mRNA_5229 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591805
Unique NamemRNA_5229
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1112
Alignment locationscaffold_12:777887..778998 -

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Properties
Property NameValue
TranscriptId591891
TrackFilteredModels2
ProteinId591805
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:777887..778998 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591805gene_5229Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591805mRNA_5229-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5229CDS_5229Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5229 ID=mRNA_5229|Name=jgi.p|Nanoce1779_2|591805|organism=Nannochloropsis oceanica|type=mRNA|length=1112bp
GCCGGCAGGTATCCATCCCTCTATCCCGGTCTACCAGCACCGCAGGGCAA
CCACGGCTTCAAACATGACCACTACCACCACCACAACCACCACCACCACT
GCTTCGCACGGCCTCGGCGGGTTTGTTTCGACCCACATTCCGACAAGCAT
AGCCGCTACTTGTTTTTCCTCCATCTCATCCTCATCCTCTGCCACCACTA
AAGCGCCTGTCATCACGCTGACGGCCACGCCCATGCCTCTACGGGCTGAG
TTAAAAAGGAGGAACAGCCACCCTCTCCGCCTCGGTCCCGGGACCTCCCA
CGTGATCGCCGAGGACGACGGAGAGACTCTTTTCCACAGTACTACCAGCA
CTAAGGCTTTGCTTTTGGTATTTGCCGTTTATGCGCTGGTGAATGGATGG
AATGGCTTTGTGGCGAAGGGTGGCGAAGCGGCGATGGAGGCCGTGAGGGA
GCTGGTGTTGCTCGTGTTGCTTGTCGTGGGCGTTGCGCCCCTTCTGGACC
ACTATTTTTTCTAAGAAAGCACTTACATACCTATGTGTATATCATATGGT
CGTAGATTGATAAGGTTTTTTGAATATAGGAGAGGGTGTGCACCGGGACA
CAAGCCGTGACGCGAGAGAGGAGGTAGGAGAGGGAAGGGTCGGAGAAGGC
TGTGCCTGTTTGTGACAGGGATGCTGTACGCCGGCGCTCAACGGGGTAAG
AGAGAGAGTTGCTATACAGGTGTGTGTGTCAAAAAACTAACTGCTTCAGG
TTCGGGGCGCATGTGCCTTCGGTCTTATTAGTCAGGAGGGCTGACAGAGA
CAGTCAGGCTTGAGTCCAAGCAAGCCCGAAATGGCCCCATCGGAGGGGGG
GGGGGCAGATAGAATACAGATTCACATGAATTTGGTACTATATATTTATA
AGCATACAGGGAGCTGCTCTGTGAATGAATATTTTGCATATTTTGTATGA
AAGAGAATGAAAAAGAGACGAGTCTAAGGGCTTGCCACAGCAAAGCAAGG
CCACATATAAGTTGAGAGACTGCCGTGATATTATTGATATCCATGAACGA
ATGAAAAACAACATATAAGGAGTCATGGATCGAAAAGTTCCTGTGATTCA
CGGGAAAAAGGT
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protein sequence of jgi.p|Nanoce1779_2|591805

>mRNA_5229-protein ID=mRNA_5229-protein|Name=jgi.p|Nanoce1779_2|591805|organism=Nannochloropsis oceanica|type=polypeptide|length=150bp
MTTTTTTTTTTTASHGLGGFVSTHIPTSIAATCFSSISSSSSATTKAPVI
TLTATPMPLRAELKRRNSHPLRLGPGTSHVIAEDDGETLFHSTTSTKALL
LVFAVYALVNGWNGFVAKGGEAAMEAVRELVLLVLLVVGVAPLLDHYFF*
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mRNA from alignment at scaffold_12:777887..778998-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5229 ID=mRNA_5229|Name=jgi.p|Nanoce1779_2|591805|organism=Nannochloropsis oceanica|type=mRNA|length=1112bp|location=Sequence derived from alignment at scaffold_12:777887..778998- (Nannochloropsis oceanica)
GCCGGCAGGTATCCATCCCTCTATCCCGGTCTACCAGCACCGCAGGGCAA
CCACGGCTTCAAACATGACCACTACCACCACCACAACCACCACCACCACT
GCTTCGCACGGCCTCGGCGGGTTTGTTTCGACCCACATTCCGACAAGCAT
AGCCGCTACTTGTTTTTCCTCCATCTCATCCTCATCCTCTGCCACCACTA
AAGCGCCTGTCATCACGCTGACGGCCACGCCCATGCCTCTACGGGCTGAG
TTAAAAAGGAGGAACAGCCACCCTCTCCGCCTCGGTCCCGGGACCTCCCA
CGTGATCGCCGAGGACGACGGAGAGACTCTTTTCCACAGTACTACCAGCA
CTAAGGCTTTGCTTTTGGTATTTGCCGTTTATGCGCTGGTGAATGGATGG
AATGGCTTTGTGGCGAAGGGTGGCGAAGCGGCGATGGAGGCCGTGAGGGA
GCTGGTGTTGCTCGTGTTGCTTGTCGTGGGCGTTGCGCCCCTTCTGGACC
ACTATTTTTTCTAAGAAAGCACTTACATACCTATGTGTATATCATATGGT
CGTAGATTGATAAGGTTTTTTGAATATAGGAGAGGGTGTGCACCGGGACA
CAAGCCGTGACGCGAGAGAGGAGGTAGGAGAGGGAAGGGTCGGAGAAGGC
TGTGCCTGTTTGTGACAGGGATGCTGTACGCCGGCGCTCAACGGGGTAAG
AGAGAGAGTTGCTATACAGGTGTGTGTGTCAAAAAACTAACTGCTTCAGG
TTCGGGGCGCATGTGCCTTCGGTCTTATTAGTCAGGAGGGCTGACAGAGA
CAGTCAGGCTTGAGTCCAAGCAAGCCCGAAATGGCCCCATCGGAGGGGGG
GGGGGCAGATAGAATACAGATTCACATGAATTTGGTACTATATATTTATA
AGCATACAGGGAGCTGCTCTGTGAATGAATATTTTGCATATTTTGTATGA
AAGAGAATGAAAAAGAGACGAGTCTAAGGGCTTGCCACAGCAAAGCAAGG
CCACATATAAGTTGAGAGACTGCCGTGATATTATTGATATCCATGAACGA
ATGAAAAACAACATATAAGGAGTCATGGATCGAAAAGTTCCTGTGATTCA
CGGGAAAAAGGT
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Coding sequence (CDS) from alignment at scaffold_12:777887..778998-

>mRNA_5229 ID=mRNA_5229|Name=jgi.p|Nanoce1779_2|591805|organism=Nannochloropsis oceanica|type=CDS|length=450bp|location=Sequence derived from alignment at scaffold_12:777887..778998- (Nannochloropsis oceanica)
ATGACCACTACCACCACCACAACCACCACCACCACTGCTTCGCACGGCCT
CGGCGGGTTTGTTTCGACCCACATTCCGACAAGCATAGCCGCTACTTGTT
TTTCCTCCATCTCATCCTCATCCTCTGCCACCACTAAAGCGCCTGTCATC
ACGCTGACGGCCACGCCCATGCCTCTACGGGCTGAGTTAAAAAGGAGGAA
CAGCCACCCTCTCCGCCTCGGTCCCGGGACCTCCCACGTGATCGCCGAGG
ACGACGGAGAGACTCTTTTCCACAGTACTACCAGCACTAAGGCTTTGCTT
TTGGTATTTGCCGTTTATGCGCTGGTGAATGGATGGAATGGCTTTGTGGC
GAAGGGTGGCGAAGCGGCGATGGAGGCCGTGAGGGAGCTGGTGTTGCTCG
TGTTGCTTGTCGTGGGCGTTGCGCCCCTTCTGGACCACTATTTTTTCTAA
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Synonyms
Publications