jgi.p|Nanoce1779_2|591340, mRNA_5086 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|591340
Unique Name	mRNA_5086
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1979
Alignment location	scaffold_12:418538..420516 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	591426
Track	FilteredModels2
ProteinId	591340

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:418538..420516 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591340	gene_5086	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591340	mRNA_5086-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5086	CDS_5086	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:418538..420516-
coding sequence from alignment at scaffold_12:418538..420516-

mRNA sequence

>mRNA_5086 ID=mRNA_5086|Name=jgi.p|Nanoce1779_2|591340|organism=Nannochloropsis oceanica|type=mRNA|length=1979bp
GGATAGGCAGCTCTGCGCCCTACGTCCACCACCACCGCAAGCCACTTCTC
CAGCTCGCTCTCATAGCGTGCGCACAAGGAAAGACTGCCGTCCGTGTTTC
AACTTCATACCTCCGCACAACCTACACATACCACAAGCAACCATGCAGAT
CTTCAGGAAGACGTCCCTGGTGGTCGTCTCTCTAGCACTTCTCGGCGTGA
GCACCGCCAACAAGCCGGTCCTGAACATGCATGAAGACGACTTCGACTCG
ATTCGCGGCCTAGCCGAGTACATTACCAGCTCCACGGGGCTGTCCAGCGC
CAAGAATGCCCTAGACCAGGGCTTGGTTAGCAGCGATTTCGAGTTGGAAA
CTATCAACCCGGGAGGATTTTTGGGGCATGGCCGGCGGTTGGGGGCTACA
AACGAGGAGTGCGGTGCCTTTTTGGCTGCTTCTCTGGCACCCCATTTGTG
GGAATGCTTCGATATGGCCCAGACAGTGTTGAACTTAGTAAAGCAGGAGA
ACTGTCAGACGAGCTATGATTTCTCTCAGGCGAACATGCACCGAATCTGT
ACCAACCAGTGCCACGACGTCCTGCACAAGACGCTCAGCACCATGTCTTC
CGCTGGCTGCTCCGCCTCAATGCTTAAGCAGTCATGTAATGAGTGCGCCT
CGGGCGAGAAGTGCGTGGGGACCAAGTGCCGTACCGTCTGCTCTCCCTCC
CTGCCTTGCCCTTGCTCTTATGCCTGCGAAGATGGGGCTTGCATCCCTCC
CAAGAACTCGGAGGTGGCTATCAACGACTTGGGCGTGAACGGCTACAAAA
TCGCCTTGGAATATCTGTGCACGACGTCTCCCATCACCAAGGACTACTGC
TTTGCCGACATTTTCGAGGTGCTCAACGCTGTGGATGCCTCGACTTTCTG
CAGCAAGATGAAGCCCATCGGCTGCTGCACGGGGACAGTCTTCAACTTTG
TCACCGAGTGCGCGACAAGCAATGATACCCTCTCCACTAATGTCGGCTCG
ATTTCTCTGAATGACTTACAGCAATTCTGCCCAGAGGTCGACTTCAAGAC
GCCCTGTGCAAATGCTCCTGTGCTTGAGCCGGGGGCCTGCCTCGATACTT
ATTACTTGTCTGGTGCCTGGTCGGTTCGTGCCTCCGCGATGGTGACTTTG
GCATTGGCTTCCCTTACAACTGTGGCCGTGACGCTCATCCTTTGAATTTA
AAATTGAGTAGTTCTAAGCGTAGTGTGTAGAAATGATGGAGAGTACGAAG
AAAAGGCACGCGCCTGGTAAGATAATTTATGGAGATGAAAAGTTTGGCGG
CGGCAAGAGAGGAATTGTGAGTAGAAAGAAACGGAAGACCCTTGTGGTTT
TCTGGCTTGGATTTGTGCGATGGAGGAGGAAAAAGAGAGAGAGAGAATCG
AAGAGTATGAGGGGCGGGCAGGAAGGTCTTCTGACGTGCCTTTTCTCTTT
TCTGCCATGATCATTTTGAGTTTCAGTTTTCGAGTGTAGCAAATAATAAA
ACAACAACCAACAAAAAGACATTAAAAAACAAAAGAGGAAGAAAGAGAGA
GTCTTAGAGGTGAGAGAGGAGATGAAAAGGGGGCGTCTTATAAACATATA
TATATATATATATGTATGTGTGTGTAGACTTCAGGATGAGCGAGGAAAAT
GAGGAAGTAATGGGGGAGTGAAAAAGAGTGAGAGTGAGCAGCGTCTGCGA
CTAGAGCATGGTGGATAGGACAAAGTGAAAGCAAATTTTCAGCACTATCA
GAGCACAAGTCCTAGAATGGAGTAAGAAAGTAAGGAAGATCGTGCAAGGA
GGGGGGGAAAGAGGTGGAGAAAACGAGAATCAATCAAATGTGGTGGACAG
AGGAAGGTGGTCGACTGGCAAACGAAGGAAAGAAAGCAGTGAAATTGCCT
TGGTTATGGAGAGATGGAAGGTGGACGGAAGGAGAGAGGAAACACATCAA
TCAAAAAAGAAATGTCCTTCGGAATCACA

protein sequence of jgi.p|Nanoce1779_2|591340

>mRNA_5086-protein ID=mRNA_5086-protein|Name=jgi.p|Nanoce1779_2|591340|organism=Nannochloropsis oceanica|type=polypeptide|length=351bp
MQIFRKTSLVVVSLALLGVSTANKPVLNMHEDDFDSIRGLAEYITSSTGL
SSAKNALDQGLVSSDFELETINPGGFLGHGRRLGATNEECGAFLAASLAP
HLWECFDMAQTVLNLVKQENCQTSYDFSQANMHRICTNQCHDVLHKTLST
MSSAGCSASMLKQSCNECASGEKCVGTKCRTVCSPSLPCPCSYACEDGAC
IPPKNSEVAINDLGVNGYKIALEYLCTTSPITKDYCFADIFEVLNAVDAS
TFCSKMKPIGCCTGTVFNFVTECATSNDTLSTNVGSISLNDLQQFCPEVD
FKTPCANAPVLEPGACLDTYYLSGAWSVRASAMVTLALASLTTVAVTLIL
*

mRNA from alignment at scaffold_12:418538..420516-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5086 ID=mRNA_5086|Name=jgi.p|Nanoce1779_2|591340|organism=Nannochloropsis oceanica|type=mRNA|length=1979bp|location=Sequence derived from alignment at scaffold_12:418538..420516- (Nannochloropsis oceanica)
GGATAGGCAGCTCTGCGCCCTACGTCCACCACCACCGCAAGCCACTTCTC
CAGCTCGCTCTCATAGCGTGCGCACAAGGAAAGACTGCCGTCCGTGTTTC
AACTTCATACCTCCGCACAACCTACACATACCACAAGCAACCATGCAGAT
CTTCAGGAAGACGTCCCTGGTGGTCGTCTCTCTAGCACTTCTCGGCGTGA
GCACCGCCAACAAGCCGGTCCTGAACATGCATGAAGACGACTTCGACTCG
ATTCGCGGCCTAGCCGAGTACATTACCAGCTCCACGGGGCTGTCCAGCGC
CAAGAATGCCCTAGACCAGGGCTTGGTTAGCAGCGATTTCGAGTTGGAAA
CTATCAACCCGGGAGGATTTTTGGGGCATGGCCGGCGGTTGGGGGCTACA
AACGAGGAGTGCGGTGCCTTTTTGGCTGCTTCTCTGGCACCCCATTTGTG
GGAATGCTTCGATATGGCCCAGACAGTGTTGAACTTAGTAAAGCAGGAGA
ACTGTCAGACGAGCTATGATTTCTCTCAGGCGAACATGCACCGAATCTGT
ACCAACCAGTGCCACGACGTCCTGCACAAGACGCTCAGCACCATGTCTTC
CGCTGGCTGCTCCGCCTCAATGCTTAAGCAGTCATGTAATGAGTGCGCCT
CGGGCGAGAAGTGCGTGGGGACCAAGTGCCGTACCGTCTGCTCTCCCTCC
CTGCCTTGCCCTTGCTCTTATGCCTGCGAAGATGGGGCTTGCATCCCTCC
CAAGAACTCGGAGGTGGCTATCAACGACTTGGGCGTGAACGGCTACAAAA
TCGCCTTGGAATATCTGTGCACGACGTCTCCCATCACCAAGGACTACTGC
TTTGCCGACATTTTCGAGGTGCTCAACGCTGTGGATGCCTCGACTTTCTG
CAGCAAGATGAAGCCCATCGGCTGCTGCACGGGGACAGTCTTCAACTTTG
TCACCGAGTGCGCGACAAGCAATGATACCCTCTCCACTAATGTCGGCTCG
ATTTCTCTGAATGACTTACAGCAATTCTGCCCAGAGGTCGACTTCAAGAC
GCCCTGTGCAAATGCTCCTGTGCTTGAGCCGGGGGCCTGCCTCGATACTT
ATTACTTGTCTGGTGCCTGGTCGGTTCGTGCCTCCGCGATGGTGACTTTG
GCATTGGCTTCCCTTACAACTGTGGCCGTGACGCTCATCCTTTGAATTTA
AAATTGAGTAGTTCTAAGCGTAGTGTGTAGAAATGATGGAGAGTACGAAG
AAAAGGCACGCGCCTGGTAAGATAATTTATGGAGATGAAAAGTTTGGCGG
CGGCAAGAGAGGAATTGTGAGTAGAAAGAAACGGAAGACCCTTGTGGTTT
TCTGGCTTGGATTTGTGCGATGGAGGAGGAAAAAGAGAGAGAGAGAATCG
AAGAGTATGAGGGGCGGGCAGGAAGGTCTTCTGACGTGCCTTTTCTCTTT
TCTGCCATGATCATTTTGAGTTTCAGTTTTCGAGTGTAGCAAATAATAAA
ACAACAACCAACAAAAAGACATTAAAAAACAAAAGAGGAAGAAAGAGAGA
GTCTTAGAGGTGAGAGAGGAGATGAAAAGGGGGCGTCTTATAAACATATA
TATATATATATATGTATGTGTGTGTAGACTTCAGGATGAGCGAGGAAAAT
GAGGAAGTAATGGGGGAGTGAAAAAGAGTGAGAGTGAGCAGCGTCTGCGA
CTAGAGCATGGTGGATAGGACAAAGTGAAAGCAAATTTTCAGCACTATCA
GAGCACAAGTCCTAGAATGGAGTAAGAAAGTAAGGAAGATCGTGCAAGGA
GGGGGGGAAAGAGGTGGAGAAAACGAGAATCAATCAAATGTGGTGGACAG
AGGAAGGTGGTCGACTGGCAAACGAAGGAAAGAAAGCAGTGAAATTGCCT
TGGTTATGGAGAGATGGAAGGTGGACGGAAGGAGAGAGGAAACACATCAA
TCAAAAAAGAAATGTCCTTCGGAATCACA

Coding sequence (CDS) from alignment at scaffold_12:418538..420516-

>mRNA_5086 ID=mRNA_5086|Name=jgi.p|Nanoce1779_2|591340|organism=Nannochloropsis oceanica|type=CDS|length=1053bp|location=Sequence derived from alignment at scaffold_12:418538..420516- (Nannochloropsis oceanica)
ATGCAGATCTTCAGGAAGACGTCCCTGGTGGTCGTCTCTCTAGCACTTCT
CGGCGTGAGCACCGCCAACAAGCCGGTCCTGAACATGCATGAAGACGACT
TCGACTCGATTCGCGGCCTAGCCGAGTACATTACCAGCTCCACGGGGCTG
TCCAGCGCCAAGAATGCCCTAGACCAGGGCTTGGTTAGCAGCGATTTCGA
GTTGGAAACTATCAACCCGGGAGGATTTTTGGGGCATGGCCGGCGGTTGG
GGGCTACAAACGAGGAGTGCGGTGCCTTTTTGGCTGCTTCTCTGGCACCC
CATTTGTGGGAATGCTTCGATATGGCCCAGACAGTGTTGAACTTAGTAAA
GCAGGAGAACTGTCAGACGAGCTATGATTTCTCTCAGGCGAACATGCACC
GAATCTGTACCAACCAGTGCCACGACGTCCTGCACAAGACGCTCAGCACC
ATGTCTTCCGCTGGCTGCTCCGCCTCAATGCTTAAGCAGTCATGTAATGA
GTGCGCCTCGGGCGAGAAGTGCGTGGGGACCAAGTGCCGTACCGTCTGCT
CTCCCTCCCTGCCTTGCCCTTGCTCTTATGCCTGCGAAGATGGGGCTTGC
ATCCCTCCCAAGAACTCGGAGGTGGCTATCAACGACTTGGGCGTGAACGG
CTACAAAATCGCCTTGGAATATCTGTGCACGACGTCTCCCATCACCAAGG
ACTACTGCTTTGCCGACATTTTCGAGGTGCTCAACGCTGTGGATGCCTCG
ACTTTCTGCAGCAAGATGAAGCCCATCGGCTGCTGCACGGGGACAGTCTT
CAACTTTGTCACCGAGTGCGCGACAAGCAATGATACCCTCTCCACTAATG
TCGGCTCGATTTCTCTGAATGACTTACAGCAATTCTGCCCAGAGGTCGAC
TTCAAGACGCCCTGTGCAAATGCTCCTGTGCTTGAGCCGGGGGCCTGCCT
CGATACTTATTACTTGTCTGGTGCCTGGTCGGTTCGTGCCTCCGCGATGG
TGACTTTGGCATTGGCTTCCCTTACAACTGTGGCCGTGACGCTCATCCTT
TGA

Synonyms

Publications