jgi.p|Nanoce1779_2|648301, mRNA_5258 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|648301
Unique NamemRNA_5258
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length564
Alignment locationscaffold_13:3976..4539 -

Link to JBrowse

Properties
Property NameValue
TranscriptId648387
TrackFilteredModels2
ProteinId648301
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:3976..4539 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|648301gene_5258Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5258CDS_5258Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|648301mRNA_5258-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5258 ID=mRNA_5258|Name=jgi.p|Nanoce1779_2|648301|organism=Nannochloropsis oceanica|type=mRNA|length=564bp
GCCATGCACTTCTCCGCCTTCCCTGCCATTTTGAGTCTCCTCGTCGTTGT
CTCGGTTACCACCATCATTACCGCCACCACTGTCCCTTTCCGCGTCTGCC
ATGATCAGGATGCATTGGGCGTGGACCGCATCGATTTAACTCCCATTCCC
GCGATAGCTGGTCAGCCCTTGAACATTTTTGTGGAAGGCATGACAGAAAT
TACCATTGAGCAAGGGTTCCGGGTGCACTTGTCGATCAAGCTGAAAAATT
TGCCAGCGCCCTCCATGAATTATGACCTTTGTGCATCGCTGATTGATGAG
GTACATTGCCCCATCCCAGCTGGTACCACTTCGCAGGCTCGTTTTGTCTA
TGACGTGCCTCGCGTGTCGCCGCCGGGACGCGCCACCACAACTGTCACGA
CCTTTAATAAGTCCGGAAAGGAAGTGAGTTGTATAATGTCTCAAGTCGAT
GTAGTATGTCCTTCAGCAGCGGTGGTACCAGGGGCACGGTTGGTGACCAA
GCCGCTGCGTGCCCAGCCGTCCGAGAAGAACGAGGGGGAGGACGAGCCGA
ATATGTGGACTTGA
back to top

protein sequence of jgi.p|Nanoce1779_2|648301

>mRNA_5258-protein ID=mRNA_5258-protein|Name=jgi.p|Nanoce1779_2|648301|organism=Nannochloropsis oceanica|type=polypeptide|length=187bp
MHFSAFPAILSLLVVVSVTTIITATTVPFRVCHDQDALGVDRIDLTPIPA
IAGQPLNIFVEGMTEITIEQGFRVHLSIKLKNLPAPSMNYDLCASLIDEV
HCPIPAGTTSQARFVYDVPRVSPPGRATTTVTTFNKSGKEVSCIMSQVDV
VCPSAAVVPGARLVTKPLRAQPSEKNEGEDEPNMWT*
back to top

mRNA from alignment at scaffold_13:3976..4539-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5258 ID=mRNA_5258|Name=jgi.p|Nanoce1779_2|648301|organism=Nannochloropsis oceanica|type=mRNA|length=564bp|location=Sequence derived from alignment at scaffold_13:3976..4539- (Nannochloropsis oceanica)
GCCATGCACTTCTCCGCCTTCCCTGCCATTTTGAGTCTCCTCGTCGTTGT
CTCGGTTACCACCATCATTACCGCCACCACTGTCCCTTTCCGCGTCTGCC
ATGATCAGGATGCATTGGGCGTGGACCGCATCGATTTAACTCCCATTCCC
GCGATAGCTGGTCAGCCCTTGAACATTTTTGTGGAAGGCATGACAGAAAT
TACCATTGAGCAAGGGTTCCGGGTGCACTTGTCGATCAAGCTGAAAAATT
TGCCAGCGCCCTCCATGAATTATGACCTTTGTGCATCGCTGATTGATGAG
GTACATTGCCCCATCCCAGCTGGTACCACTTCGCAGGCTCGTTTTGTCTA
TGACGTGCCTCGCGTGTCGCCGCCGGGACGCGCCACCACAACTGTCACGA
CCTTTAATAAGTCCGGAAAGGAAGTGAGTTGTATAATGTCTCAAGTCGAT
GTAGTATGTCCTTCAGCAGCGGTGGTACCAGGGGCACGGTTGGTGACCAA
GCCGCTGCGTGCCCAGCCGTCCGAGAAGAACGAGGGGGAGGACGAGCCGA
ATATGTGGACTTGA
back to top

Coding sequence (CDS) from alignment at scaffold_13:3976..4539-

>mRNA_5258 ID=mRNA_5258|Name=jgi.p|Nanoce1779_2|648301|organism=Nannochloropsis oceanica|type=CDS|length=561bp|location=Sequence derived from alignment at scaffold_13:3976..4539- (Nannochloropsis oceanica)
ATGCACTTCTCCGCCTTCCCTGCCATTTTGAGTCTCCTCGTCGTTGTCTC
GGTTACCACCATCATTACCGCCACCACTGTCCCTTTCCGCGTCTGCCATG
ATCAGGATGCATTGGGCGTGGACCGCATCGATTTAACTCCCATTCCCGCG
ATAGCTGGTCAGCCCTTGAACATTTTTGTGGAAGGCATGACAGAAATTAC
CATTGAGCAAGGGTTCCGGGTGCACTTGTCGATCAAGCTGAAAAATTTGC
CAGCGCCCTCCATGAATTATGACCTTTGTGCATCGCTGATTGATGAGGTA
CATTGCCCCATCCCAGCTGGTACCACTTCGCAGGCTCGTTTTGTCTATGA
CGTGCCTCGCGTGTCGCCGCCGGGACGCGCCACCACAACTGTCACGACCT
TTAATAAGTCCGGAAAGGAAGTGAGTTGTATAATGTCTCAAGTCGATGTA
GTATGTCCTTCAGCAGCGGTGGTACCAGGGGCACGGTTGGTGACCAAGCC
GCTGCGTGCCCAGCCGTCCGAGAAGAACGAGGGGGAGGACGAGCCGAATA
TGTGGACTTGA
back to top
Synonyms
Publications