jgi.p|Nanoce1779_2|592960, mRNA_5559 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592960
Unique NamemRNA_5559
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1356
Alignment locationscaffold_13:745098..746453 -

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Properties
Property NameValue
TranscriptId593046
TrackFilteredModels2
ProteinId592960
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:745098..746453 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592960gene_5559Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592960mRNA_5559-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5559CDS_5559Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5559 ID=mRNA_5559|Name=jgi.p|Nanoce1779_2|592960|organism=Nannochloropsis oceanica|type=mRNA|length=1356bp
CAGCAAACGAGGCAGGCACACGCAGACGCTGCCAGGCAAGAAAAACAGCA
GCAGCAGCAGCAGCAAGAGCAGCAGCGTGGCAGTGGAGGAGGGAAGAACA
AGAAGAGGGGGAGGGAGGGGGTGGAGGAGGTCGACCCAATGGACCCGACG
GGGGGGAAGGGAGGAGGAGGGTGGTCACAGGGATTGGGGGGAGGGAATGA
CCGCATGGCGGACAGCACTGCGGGTGGAAGTCTATGGCAGCAGCGGCCTT
TGCCCGCACCGGGGGCTGTTTTGAGAAAGCAGGGTGGAGGGGGAAGGGGG
GGGGGGGAGGAGGGCATCAGCAAGGACCGACTTGGAGACGGTGAGGGGTT
GGAAATGGAGTTGGTTGTATGACAAAGAGAGAGGAGAAGGAGGGAGGAGG
AAGAGGGTGTGTTTTTCATTCCTTCTCTCGTTTACTTTGCCTCTGGTTTG
TCCGCGTCTATACAACCAGTAAAAACAGGAACTTCCTCCAAGGCGCGGGT
CAGATAGCCAGAAGAAGATGGTATACATTCGGGGATGGATGAGGAAGGAT
GAAGAGAGGGGAGGGAAGGAGGGATGGAAGGGGGCGCGACGGAAAGTAGT
GTGCCCCTCTGTAAAGAGAGAGTGTCGATAAGTCAGTCACGAACCAAAAA
AAAGTATTCCATTTCTCGTTCCTTTTTCTCGCAAGAGCTAGAAAACCTAA
CACGAGCCCCAACAACGCAATATTATTGTCCTTACCAGCGAGAATGGCCT
TTGGGGGGACAGTGTGCTAGTTTTGGTTGGGGAAGCTCCAATGCCTCCGT
CTGTTGCAAACATTCATATTGTGGATTCCATATCTGATGCATCATCATCC
CCGGACGTGCATCGCCGACCTCGTCGCCGCACGCGTCCGCAGCGCGCAGC
AACTACTTTCTCTAACGCTTATATTGGCCGCCTCAGCGACTTGCTTGGAT
TTCTTGTATGTGCTGACGGATAAGGTAGGCGTGGTCGCATGGTTGGCGTC
TTTCAGGCATGCGCTACGCGGAGCCGCACGTCCAAACCCAAGCAAGCTGC
AACAACCCGGTGCCGTTTTCCCAAACGTTTTCTCGCCGCGACACTTCCAC
ATTCCTTGACACGATGGACTTCGAATCCCTGTTACCTGGACGCTGCGCGC
CCGTCGGTCGAGGTCCAGGTGATGGAGGGATGAGACATATGCTTCGAAAT
TGGGAATGATGCAGGGGTTAATGTAGATGCAGCGGGTGTGCTATTTGCAT
TATGGTCAATTCTTGCTTGACACCCCTTTCGAATGTATGTGTATGCGCCC
TGATTCTCACCCATTTCTTCCCTCTCTTCCCACCACAGAAACCACCACTA
CTACTT
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protein sequence of jgi.p|Nanoce1779_2|592960

>mRNA_5559-protein ID=mRNA_5559-protein|Name=jgi.p|Nanoce1779_2|592960|organism=Nannochloropsis oceanica|type=polypeptide|length=91bp
MHHHPRTCIADLVAARVRSAQQLLSLTLILAASATCLDFLYVLTDKVGVV
AWLASFRHALRGAARPNPSKLQQPGAVFPNVFSPRHFHIP*
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mRNA from alignment at scaffold_13:745098..746453-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5559 ID=mRNA_5559|Name=jgi.p|Nanoce1779_2|592960|organism=Nannochloropsis oceanica|type=mRNA|length=1356bp|location=Sequence derived from alignment at scaffold_13:745098..746453- (Nannochloropsis oceanica)
CAGCAAACGAGGCAGGCACACGCAGACGCTGCCAGGCAAGAAAAACAGCA
GCAGCAGCAGCAGCAAGAGCAGCAGCGTGGCAGTGGAGGAGGGAAGAACA
AGAAGAGGGGGAGGGAGGGGGTGGAGGAGGTCGACCCAATGGACCCGACG
GGGGGGAAGGGAGGAGGAGGGTGGTCACAGGGATTGGGGGGAGGGAATGA
CCGCATGGCGGACAGCACTGCGGGTGGAAGTCTATGGCAGCAGCGGCCTT
TGCCCGCACCGGGGGCTGTTTTGAGAAAGCAGGGTGGAGGGGGAAGGGGG
GGGGGGGAGGAGGGCATCAGCAAGGACCGACTTGGAGACGGTGAGGGGTT
GGAAATGGAGTTGGTTGTATGACAAAGAGAGAGGAGAAGGAGGGAGGAGG
AAGAGGGTGTGTTTTTCATTCCTTCTCTCGTTTACTTTGCCTCTGGTTTG
TCCGCGTCTATACAACCAGTAAAAACAGGAACTTCCTCCAAGGCGCGGGT
CAGATAGCCAGAAGAAGATGGTATACATTCGGGGATGGATGAGGAAGGAT
GAAGAGAGGGGAGGGAAGGAGGGATGGAAGGGGGCGCGACGGAAAGTAGT
GTGCCCCTCTGTAAAGAGAGAGTGTCGATAAGTCAGTCACGAACCAAAAA
AAAGTATTCCATTTCTCGTTCCTTTTTCTCGCAAGAGCTAGAAAACCTAA
CACGAGCCCCAACAACGCAATATTATTGTCCTTACCAGCGAGAATGGCCT
TTGGGGGGACAGTGTGCTAGTTTTGGTTGGGGAAGCTCCAATGCCTCCGT
CTGTTGCAAACATTCATATTGTGGATTCCATATCTGATGCATCATCATCC
CCGGACGTGCATCGCCGACCTCGTCGCCGCACGCGTCCGCAGCGCGCAGC
AACTACTTTCTCTAACGCTTATATTGGCCGCCTCAGCGACTTGCTTGGAT
TTCTTGTATGTGCTGACGGATAAGGTAGGCGTGGTCGCATGGTTGGCGTC
TTTCAGGCATGCGCTACGCGGAGCCGCACGTCCAAACCCAAGCAAGCTGC
AACAACCCGGTGCCGTTTTCCCAAACGTTTTCTCGCCGCGACACTTCCAC
ATTCCTTGACACGATGGACTTCGAATCCCTGTTACCTGGACGCTGCGCGC
CCGTCGGTCGAGGTCCAGGTGATGGAGGGATGAGACATATGCTTCGAAAT
TGGGAATGATGCAGGGGTTAATGTAGATGCAGCGGGTGTGCTATTTGCAT
TATGGTCAATTCTTGCTTGACACCCCTTTCGAATGTATGTGTATGCGCCC
TGATTCTCACCCATTTCTTCCCTCTCTTCCCACCACAGAAACCACCACTA
CTACTT
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Coding sequence (CDS) from alignment at scaffold_13:745098..746453-

>mRNA_5559 ID=mRNA_5559|Name=jgi.p|Nanoce1779_2|592960|organism=Nannochloropsis oceanica|type=CDS|length=273bp|location=Sequence derived from alignment at scaffold_13:745098..746453- (Nannochloropsis oceanica)
ATGCATCATCATCCCCGGACGTGCATCGCCGACCTCGTCGCCGCACGCGT
CCGCAGCGCGCAGCAACTACTTTCTCTAACGCTTATATTGGCCGCCTCAG
CGACTTGCTTGGATTTCTTGTATGTGCTGACGGATAAGGTAGGCGTGGTC
GCATGGTTGGCGTCTTTCAGGCATGCGCTACGCGGAGCCGCACGTCCAAA
CCCAAGCAAGCTGCAACAACCCGGTGCCGTTTTCCCAAACGTTTTCTCGC
CGCGACACTTCCACATTCCTTGA
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Synonyms
Publications