jgi.p|Nanoce1779_2|593632, mRNA_6062 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|593632
Unique NamemRNA_6062
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length837
Alignment locationscaffold_14:437053..437965 -

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Properties
Property NameValue
TranscriptId593718
TrackFilteredModels2
ProteinId593632
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:437053..437965 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593632gene_6062Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593632mRNA_6062-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6062CDS_6062Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6062 ID=mRNA_6062|Name=jgi.p|Nanoce1779_2|593632|organism=Nannochloropsis oceanica|type=mRNA|length=837bp
AGGATGAGAAGCACAATCAAAAAGCCCCCTCATGTCTCCTCACAGCTTTC
ACCCTCTGTTTTACGCAACCCTCAGCCACAGACATGGCCGTCACGCTACA
CACAAGTCTCGGCAACATTAAGCTAGAGCTCTACTGCGACTTGGTGCCCC
GAGCATGCGAGAACTTCTTGGCGCTGGCCGCGTCGGGCACCTACGAGAAT
ACTCTTTTCCACCGCAATATTCGTGAATTCATGGTGCAGGGGGGGGACCC
CACGGGCACGGGCAAGGGCGGCGAAAGTATTTGGGGCGGCTACTTGGCAG
ACGAATTCCACCCGTCTCTCAGGCACGACCGGCGCGGCATTGTGTCCATG
GCCAACCGCGGCCCTGGCACGAATGGCTGCCAGTTTTTTATAACGTACGG
CGAGCATAAGCATCTGAACAACCAGTACACCATCTTTGCGCGGGTCATCG
ATGGGATGGACGTGCTAGACGCTATGGAGAAGGTGCCGGTGGGTAAGAAG
AATCGGCCTGTCAACGACATCACTATTAAGACGGTCGAGATCCACGCCAA
CCCATTTGCTGATTCTAGTTCTTAGTGCTTGTGTTGTCTTATGCGGCAAT
GGATGGTGTAGGGCTGAAAGCAAGGGCGTATCGCCATCGTGCCGCACCCG
AAAACGGCAGTCGGTCAAGAGTAAGACTCAGGATGTGAAATAGGGCGATA
TTTAAAATGAGCGGAAATTACAAATACAGCGAGTTTGAGCCTAGGATATC
AACGGGGCTTACCAAAAATCTCGAAGTGTATATAGCGAGACGACAGTGCA
CCAGCAGCTAAATTAAACAAAAATCTAATGCCGCTTT
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protein sequence of jgi.p|Nanoce1779_2|593632

>mRNA_6062-protein ID=mRNA_6062-protein|Name=jgi.p|Nanoce1779_2|593632|organism=Nannochloropsis oceanica|type=polypeptide|length=164bp
MAVTLHTSLGNIKLELYCDLVPRACENFLALAASGTYENTLFHRNIREFM
VQGGDPTGTGKGGESIWGGYLADEFHPSLRHDRRGIVSMANRGPGTNGCQ
FFITYGEHKHLNNQYTIFARVIDGMDVLDAMEKVPVGKKNRPVNDITIKT
VEIHANPFADSSS*
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mRNA from alignment at scaffold_14:437053..437965-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6062 ID=mRNA_6062|Name=jgi.p|Nanoce1779_2|593632|organism=Nannochloropsis oceanica|type=mRNA|length=913bp|location=Sequence derived from alignment at scaffold_14:437053..437965- (Nannochloropsis oceanica)
AGGATGAGAAGCACAATCAAAAAGCCCCCTCATGTCTCCTCACAGCTTTC
ACCCTCTGTTTTACGCAACCCTCAGCCACAGACATGGCCGTCACGCTACA
CACAAGTCTCGGCAACATTAAGCTAGAGCTCTACTGCGACTTGGTGCCCC
GAGCATGCGAGGTAAGCCTTTGCTAAGTGTCTCATGCCAAATAAACGGAG
CCCACAGTGTTCACCCTCCCTTCCTCATCCCCACTAGAACTTCTTGGCGC
TGGCCGCGTCGGGCACCTACGAGAATACTCTTTTCCACCGCAATATTCGT
GAATTCATGGTGCAGGGGGGGGACCCCACGGGCACGGGCAAGGGCGGCGA
AAGTATTTGGGGCGGCTACTTGGCAGACGAATTCCACCCGTCTCTCAGGC
ACGACCGGCGCGGCATTGTGTCCATGGCCAACCGCGGCCCTGGCACGAAT
GGCTGCCAGTTTTTTATAACGTACGGCGAGCATAAGCATCTGAACAACCA
GTACACCATCTTTGCGCGGGTCATCGATGGGATGGACGTGCTAGACGCTA
TGGAGAAGGTGCCGGTGGGTAAGAAGAATCGGCCTGTCAACGACATCACT
ATTAAGACGGTCGAGATCCACGCCAACCCATTTGCTGATTCTAGTTCTTA
GTGCTTGTGTTGTCTTATGCGGCAATGGATGGTGTAGGGCTGAAAGCAAG
GGCGTATCGCCATCGTGCCGCACCCGAAAACGGCAGTCGGTCAAGAGTAA
GACTCAGGATGTGAAATAGGGCGATATTTAAAATGAGCGGAAATTACAAA
TACAGCGAGTTTGAGCCTAGGATATCAACGGGGCTTACCAAAAATCTCGA
AGTGTATATAGCGAGACGACAGTGCACCAGCAGCTAAATTAAACAAAAAT
CTAATGCCGCTTT
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Coding sequence (CDS) from alignment at scaffold_14:437053..437965-

>mRNA_6062 ID=mRNA_6062|Name=jgi.p|Nanoce1779_2|593632|organism=Nannochloropsis oceanica|type=CDS|length=984bp|location=Sequence derived from alignment at scaffold_14:437053..437965- (Nannochloropsis oceanica)
AGAACTTCTTGGCGCTGGCCGCGTCGGGCACCTACGAGAATACTCTTTTC
CACCGCAATATTCGTGAATTCATGGTGCAGGGGGGGGACCCCACGGGCAC
GGGCAAGGGCGGCGAAAGTATTTGGGGCGGCTACTTGGCAGACGAATTCC
ACCCGTCTCTCAGGCACGACCGGCGCGGCATTGTGTCCATGGCCAACCGC
GGCCCTGGCACGAATGGCTGCCAGTTTTTTATAACGTACGGCGAGCATAA
GCATCTGAACAACCAGTACACCATCTTTGCGCGGGTCATCGATGGGATGG
ACGTGCTAGACGCTATGGAGAAGGTGCCGGTGGGTAAGAAGAATCGGCCT
GTCAACGACATCACTATTAAGACGGTCGAGATCCACGCCAACCCATTTGC
TGATTCTAGTTCTTAGATGGCCGTCACGCTACACACAAGTCTCGGCAACA
TTAAGCTAGAGCTCTACTGCGACTTGGTGCCCCGAGCATGCGAGAACTTC
TTGGCGCTGGCCGCGTCGGGCACCTACGAGAATACTCTTTTCCACCGCAA
TATTCGTGAATTCATGGTGCAGGGGGGGGACCCCACGGGCACGGGCAAGG
GCGGCGAAAGTATTTGGGGCGGCTACTTGGCAGACGAATTCCACCCGTCT
CTCAGGCACGACCGGCGCGGCATTGTGTCCATGGCCAACCGCGGCCCTGG
CACGAATGGCTGCCAGTTTTTTATAACGTACGGCGAGCATAAGCATCTGA
ACAACCAGTACACCATCTTTGCGCGGGTCATCGATGGGATGGACGTGCTA
GACGCTATGGAGAAGGTGCCGGTGGGTAAGAAGAATCGGCCTGTCAACGA
CATCACTATTAAGACGGTCGAGATCCACGCCAACCCATTTGCTGATTCTA
GTTCTTAGATGGCCGTCACGCTACACACAAGTCTCGGCAACATTAAGCTA
GAGCTCTACTGCGACTTGGTGCCCCGAGCATGCG
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Synonyms
Publications