jgi.p|Nanoce1779_2|593747, mRNA_6100 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|593747
Unique Name	mRNA_6100
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1229
Alignment location	scaffold_14:514072..516309 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	593833
Track	FilteredModels2
ProteinId	593747

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:514072..516309 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593747	gene_6100	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593747	mRNA_6100-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6100	CDS_6100	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:514072..516309+
coding sequence from alignment at scaffold_14:514072..516309+

mRNA sequence

>mRNA_6100 ID=mRNA_6100|Name=jgi.p|Nanoce1779_2|593747|organism=Nannochloropsis oceanica|type=mRNA|length=1229bp
ACAGGCTTTTGTCGGCCCACCTCCTCCTCTCATCTTCATAGAATTACTTG
CCGCTAGGAGAGCAGGCCACCCAAGGAAGCCACCACTACCTACCAAATCA
AAATGAGCGTCAGCAGTCCCGAAGCCGTTCTGGGATTGGACTTGAGCCAG
GAGGGGGAAGGCACTGAGACTGGGAGTGTGACCAGGCGTCCTAGCCTCAT
GAGTCGTCTGTCAAGTGCTGTGGGAACAGAGGGAGAGCCAGGGACCCCGG
GGGCGTTGCTACGGAGGCTTTCTACTTCCCTTCAATTCAAACGCAAAGGC
TCTAGCACTCCCTTACCGAATGTAGACGAGATTCCGGCGACATTTCTTGC
GTCGTGCAAGGGCAACGTGGAGAAGGCGGGCAAGAAGTGGCAAGCGTCCA
AGCAGTGGCGCGAAGAGAATGATATTGATCACATTCTCGAACGACCGCAC
CCCAACTTTGACACATTGAAGCGTGTCTATCCCGCTTATTTGCATGGGAG
GGACTTGCAGGGTAACTGCATTTCAGTAGAGATACCAGGTCTGATGGACG
TGAAGCTCATGAAATCCGCGAACTTGACGCCGAAGGACATGGTCATGCAG
ATGGCTCTAACTCAAGAGTATATCTGGGAGGAGCTCACGCCGGGGGATGA
CAAAACGATCGTCACGTTGATGGACGCCAAGGGACTGTCCTTGCTGCGCC
TAGGCTCCCCGGATTGTATGTCACTCATTCGGGCGGCTTCTGAGACGCTC
AACAGCCACTACCCCGAACGAGTCCTCCGAATCCTCGTCATTAACGCTCC
TCGTTTCTTCGGGCCCATCTTCAAGCTTCTCTCCACCGTCATGCCGGCCT
CCCTTCGAGATCAATTCCAAATCTGTTCCTCCGTCGACCAGTTAGAGAAA
TTTATCTCGCTTGATGTCCTTCCATCTGAATATGGGGGGAAATGCCCGTT
TAAATTGGGGGAGGCTGAGGAGGAGGTGGGGTTGCGAACCCTTGTGATGA
AAAACAATGCGGCGGCTGACGTCGCCCGGGCTGTTAGCACATGAGGGAAG
GAGTGAAAAGGAAAAGGAGGGAGGGTACAGAGGGGGGCGATGTTTTCGGT
TTTAGTTGAAGAGAACGAAGGCAGCATTTCATCGACACTGACAGAGACAG
GATAGTACAGTTGGTATGCTTTTGCATGGTGCGAGGGAAAGTAAAATCAC
AGCACGAAAATTAATTGTTGAAAGATGAC

protein sequence of jgi.p|Nanoce1779_2|593747

>mRNA_6100-protein ID=mRNA_6100-protein|Name=jgi.p|Nanoce1779_2|593747|organism=Nannochloropsis oceanica|type=polypeptide|length=314bp
MSVSSPEAVLGLDLSQEGEGTETGSVTRRPSLMSRLSSAVGTEGEPGTPG
ALLRRLSTSLQFKRKGSSTPLPNVDEIPATFLASCKGNVEKAGKKWQASK
QWREENDIDHILERPHPNFDTLKRVYPAYLHGRDLQGNCISVEIPGLMDV
KLMKSANLTPKDMVMQMALTQEYIWEELTPGDDKTIVTLMDAKGLSLLRL
GSPDCMSLIRAASETLNSHYPERVLRILVINAPRFFGPIFKLLSTVMPAS
LRDQFQICSSVDQLEKFISLDVLPSEYGGKCPFKLGEAEEEVGLRTLVMK
NNAAADVARAVST*

mRNA from alignment at scaffold_14:514072..516309+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6100 ID=mRNA_6100|Name=jgi.p|Nanoce1779_2|593747|organism=Nannochloropsis oceanica|type=mRNA|length=2238bp|location=Sequence derived from alignment at scaffold_14:514072..516309+ (Nannochloropsis oceanica)
ACAGGCTTTTGTCGGCCCACCTCCTCCTCTCATCTTCATAGAATTACTTG
CCGCTAGGAGAGCAGGCCACCCAAGGAAGCCACCACTACCTACCAAATCA
AAATGAGCGTCAGCAGTCCCGAAGCCGTTCTGGGATTGGACTTGAGCCAG
GAGGGGGAAGGCACTGAGACTGGGAGTGTGACCAGGCGTCCTAGCCTCAT
GAGTCGTCTGTCAAGTGCTGTGGGAACAGAGGGAGAGCCAGGGACCCCGG
GGGCGTTGCTACGGAGGCTTTCTACTTCCCTTCAATTCAAACGCAAAGGC
TCTAGCACTCCCTTACCGAATGTAGACGAGATTCCGGCGACATTTCTTGC
GTCGTGCAAGGGCAACGTGGAGAAGGCGGGCAAGAAGTGGCAAGCGTCCA
AGCAGTGGCGCGAAGAGAATGATATTGGTGAGTGCGTAAATGTTGAATTT
TTGGATCCATTGGAAGGCAGGTCTTTTCAGAAGTTTCTCGATATGCTTGG
GTAGGACGGAGACTTGGAGGAGGAAAGAGATTGCTGGCTCCTCTTTTAAG
GGGAAACGATTGGTCAAGCGTGGTGGTTTTTGGTCATTCCCGGGACAAGC
GTCAGTACCATTGCCAAGAAAAGCCGTGCAGCCTATTGCCCAGAATCTTG
TAGGGCGTGACGTGTATTCTCTTCTTCCCTCCTCTCTCTATCTATCCATC
CATCCATCCATCCATCCATCCATCCCCTTTTGGAGCTCTCACACGGTATG
TCCTCCTTTCTTCTTCTTCTTCCCCTTCAGATCACATTCTCGAACGACCG
CACCCCAACTTTGACACATTGAAGCGTGTCTATCCCGCTTATTTGCATGG
GAGGGACTTGCAGGGTAACTGCATTTCAGTAGAGATACCAGGTTTGAACG
AGGGATGGAAGGAGAGAGGGAGGGAGAAAGGAAAAGCCGGAAGCGTTGGG
TGGGCCTCCCTTCACAAATTGGTGAGATTGATGGGCGTGAAGCTCATGAA
TATCTCCATGAATGCTCAAGGACATGGTTATGTCCATGACGTATGCACAA
GCTCGTATCCCCTCGTCCCTCCCTTCCTCCCTCCTTCCCTCGCTTCTCCC
CTAGGTCTGATGGACGTGAAGCTCATGAAATCCGCGAACTTGACGCCGAA
GGACATGGTCATGCAGATGGCTCTAACTCAAGAGTATATCTGGGAGGAGC
TCACGCCGGGGGATGACAAAACGGTTCGTACGGAGGGAAGGCCCTGTGCT
GTGTTTTCACTCGCTTTCGCGGTTTCGCGCTTACCCCGCTTCGGGGGCAT
AAGTGTATCACAATCTGCACACGCTCGTCTCGGCACTTACCCAATACCTT
CCTCAGACACCTTCGTTTGATGCACTGGCCCGCCCTCTCACGCACAGATC
GTCACGTTGATGGACGCCAAGGGACTGTCCTTGCTGCGCCTAGGCTCCCC
GGATTGTATGTCACTCATTCGGGCGGCTTCTGAGGTCCGTATCGCGCAGG
GCAGAGGGGGAAAAGAGAGCGCAGGGTGTGGGAAGACACGACGGTGGGGA
ATAGAGTAGATACATCCAATCTTTCAGATACACCGCATAACCTACACACA
GACGCTCAACAGCCACTACCCCGAACGAGTCCTCCGAATCCTCGTCATTA
ACGCTCCTCGGTATGCGATATTTCTCGTCCACTAATCTTCCGTCTTCCTT
TATGTCCTGCCCAATGTCTTTCTTTGTCTGTGCTTCACACTCGTATTCGC
TGCTTCTCGTGGAGGTGAGCCCGTACTCACCTTTCCTCCCTCCCTTCCTC
CTTCTTTTTCAGTTTCTTCGGGCCCATCTTCAAGCTTCTCTCCACCGTCA
TGCCGGCCTCCCTTCGAGATCAATTCCAAATCTGTTCCTCCGTCGACCAG
TTAGAGAAATTTATCTCGCTTGATGTCCTTCCATCTGAATATGGGGGGAA
ATGCCCGTTTAAATTGGGGGAGGCTGAGGAGGAGGTGGGGTTGCGAACCC
TTGTGATGAAAAACAATGCGGCGGCTGACGTCGCCCGGGCTGTTAGCACA
TGAGGGAAGGAGTGAAAAGGAAAAGGAGGGAGGGTACAGAGGGGGGCGAT
GTTTTCGGTTTTAGTTGAAGAGAACGAAGGCAGCATTTCATCGACACTGA
CAGAGACAGGATAGTACAGTTGGTATGCTTTTGCATGGTGCGAGGGAAAG
TAAAATCACAGCACGAAAATTAATTGTTGAAAGATGAC

Coding sequence (CDS) from alignment at scaffold_14:514072..516309+

>mRNA_6100 ID=mRNA_6100|Name=jgi.p|Nanoce1779_2|593747|organism=Nannochloropsis oceanica|type=CDS|length=5652bp|location=Sequence derived from alignment at scaffold_14:514072..516309+ (Nannochloropsis oceanica)
ATGAGCGTCAGCAGTCCCGAAGCCGTTCTGGGATTGGACTTGAGCCAGGA
GGGGGAAGGCACTGAGACTGGGAGTGTGACCAGGCGTCCTAGCCTCATGA
GTCGTCTGTCAAGTGCTGTGGGAACAGAGGGAGAGCCAGGGACCCCGGGG
GCGTTGCTACGGAGGCTTTCTACTTCCCTTCAATTCAAACGCAAAGGCTC
TAGCACTCCCTTACCGAATGTAGACGAGATTCCGGCGACATTTCTTGCGT
CGTGCAAGGGCAACGTGGAGAAGGCGGGCAAGAAGTGGCAAGCGTCCAAG
CAGTGGCGCGAAGAGAATGATATTGATCACATTCTCGAACGACCGCACCC
CAACTTTGACACATTGAAGCGTGTCTATCCCGCTTATTTGCATGGGAGGG
ACTTGCAGGGTAACTGCATTTCAGTAGAGATACCAGGTCTGATGGACGTG
AAGCTCATGAAATCCGCGAACTTGACGCCGAAGGACATGGTCATGCAGAT
GGCTCTAACTCAAGAGTATATCTGGGAGGAGCTCACGCCGGGGGATGACA
AAACGATCGTCACGTTGATGGACGCCAAGGGACTGTCCTTGCTGCGCCTA
GGCTCCCCGGATTGTATGTCACTCATTCGGGCGGCTTCTGAGACGCTCAA
CAGCCACTACCCCGAACGAGTCCTCCGAATCCTCGTCATTAACGCTCCTC
GTTTCTTCGGGCCCATCTTCAAGCTTCTCTCCACCGTCATGCCGGCCTCC
CTTCGAGATCAATTCCAAATCTGTTCCTCCGTCGACCAGTTAGAGAAATT
TATCTCGCTTGATGTCCTTCCATCTGAATATGGGGGGAAATGCCCGTTTA
AATTGGGGGAGGCTGAGGAGGAGGTGGGGTTGCGAACCCTTGTGATGAAA
AACAATGCGGCGGCTGACGTCGCCCGGGCTGTTAGCACATGAATGAGCGT
CAGCAGTCCCGAAGCCGTTCTGGGATTGGACTTGAGCCAGGAGGGGGAAG
GCACTGAGACTGGGAGTGTGACCAGGCGTCCTAGCCTCATGAGTCGTCTG
TCAAGTGCTGTGGGAACAGAGGGAGAGCCAGGGACCCCGGGGGCGTTGCT
ACGGAGGCTTTCTACTTCCCTTCAATTCAAACGCAAAGGCTCTAGCACTC
CCTTACCGAATGTAGACGAGATTCCGGCGACATTTCTTGCGTCGTGCAAG
GGCAACGTGGAGAAGGCGGGCAAGAAGTGGCAAGCGTCCAAGCAGTGGCG
CGAAGAGAATGATATTGATCACATTCTCGAACGACCGCACCCCAACTTTG
ACACATTGAAGCGTGTCTATCCCGCTTATTTGCATGGGAGGGACTTGCAG
GGTAACTGCATTTCAGTAGAGATACCAGGTCTGATGGACGTGAAGCTCAT
GAAATCCGCGAACTTGACGCCGAAGGACATGGTCATGCAGATGGCTCTAA
CTCAAGAGTATATCTGGGAGGAGCTCACGCCGGGGGATGACAAAACGATC
GTCACGTTGATGGACGCCAAGGGACTGTCCTTGCTGCGCCTAGGCTCCCC
GGATTGTATGTCACTCATTCGGGCGGCTTCTGAGACGCTCAACAGCCACT
ACCCCGAACGAGTCCTCCGAATCCTCGTCATTAACGCTCCTCGTTTCTTC
GGGCCCATCTTCAAGCTTCTCTCCACCGTCATGCCGGCCTCCCTTCGAGA
TCAATTCCAAATCTGTTCCTCCGTCGACCAGTTAGAGAAATTTATCTCGC
TTGATGTCCTTCCATCTGAATATGGGGGGAAATGCCCGTTTAAATTGGGG
GAGGCTGAGGAGGAGGTGGGGTTGCGAACCCTTGTGATGAAAAACAATGC
GGCGGCTGACGTCGCCCGGGCTGTTAGCACATGAATGAGCGTCAGCAGTC
CCGAAGCCGTTCTGGGATTGGACTTGAGCCAGGAGGGGGAAGGCACTGAG
ACTGGGAGTGTGACCAGGCGTCCTAGCCTCATGAGTCGTCTGTCAAGTGC
TGTGGGAACAGAGGGAGAGCCAGGGACCCCGGGGGCGTTGCTACGGAGGC
TTTCTACTTCCCTTCAATTCAAACGCAAAGGCTCTAGCACTCCCTTACCG
AATGTAGACGAGATTCCGGCGACATTTCTTGCGTCGTGCAAGGGCAACGT
GGAGAAGGCGGGCAAGAAGTGGCAAGCGTCCAAGCAGTGGCGCGAAGAGA
ATGATATTGATCACATTCTCGAACGACCGCACCCCAACTTTGACACATTG
AAGCGTGTCTATCCCGCTTATTTGCATGGGAGGGACTTGCAGGGTAACTG
CATTTCAGTAGAGATACCAGGTCTGATGGACGTGAAGCTCATGAAATCCG
CGAACTTGACGCCGAAGGACATGGTCATGCAGATGGCTCTAACTCAAGAG
TATATCTGGGAGGAGCTCACGCCGGGGGATGACAAAACGATCGTCACGTT
GATGGACGCCAAGGGACTGTCCTTGCTGCGCCTAGGCTCCCCGGATTGTA
TGTCACTCATTCGGGCGGCTTCTGAGACGCTCAACAGCCACTACCCCGAA
CGAGTCCTCCGAATCCTCGTCATTAACGCTCCTCGTTTCTTCGGGCCCAT
CTTCAAGCTTCTCTCCACCGTCATGCCGGCCTCCCTTCGAGATCAATTCC
AAATCTGTTCCTCCGTCGACCAGTTAGAGAAATTTATCTCGCTTGATGTC
CTTCCATCTGAATATGGGGGGAAATGCCCGTTTAAATTGGGGGAGGCTGA
GGAGGAGGTGGGGTTGCGAACCCTTGTGATGAAAAACAATGCGGCGGCTG
ACGTCGCCCGGGCTGTTAGCACATGAATGAGCGTCAGCAGTCCCGAAGCC
GTTCTGGGATTGGACTTGAGCCAGGAGGGGGAAGGCACTGAGACTGGGAG
TGTGACCAGGCGTCCTAGCCTCATGAGTCGTCTGTCAAGTGCTGTGGGAA
CAGAGGGAGAGCCAGGGACCCCGGGGGCGTTGCTACGGAGGCTTTCTACT
TCCCTTCAATTCAAACGCAAAGGCTCTAGCACTCCCTTACCGAATGTAGA
CGAGATTCCGGCGACATTTCTTGCGTCGTGCAAGGGCAACGTGGAGAAGG
CGGGCAAGAAGTGGCAAGCGTCCAAGCAGTGGCGCGAAGAGAATGATATT
GATCACATTCTCGAACGACCGCACCCCAACTTTGACACATTGAAGCGTGT
CTATCCCGCTTATTTGCATGGGAGGGACTTGCAGGGTAACTGCATTTCAG
TAGAGATACCAGGTCTGATGGACGTGAAGCTCATGAAATCCGCGAACTTG
ACGCCGAAGGACATGGTCATGCAGATGGCTCTAACTCAAGAGTATATCTG
GGAGGAGCTCACGCCGGGGGATGACAAAACGATCGTCACGTTGATGGACG
CCAAGGGACTGTCCTTGCTGCGCCTAGGCTCCCCGGATTGTATGTCACTC
ATTCGGGCGGCTTCTGAGACGCTCAACAGCCACTACCCCGAACGAGTCCT
CCGAATCCTCGTCATTAACGCTCCTCGTTTCTTCGGGCCCATCTTCAAGC
TTCTCTCCACCGTCATGCCGGCCTCCCTTCGAGATCAATTCCAAATCTGT
TCCTCCGTCGACCAGTTAGAGAAATTTATCTCGCTTGATGTCCTTCCATC
TGAATATGGGGGGAAATGCCCGTTTAAATTGGGGGAGGCTGAGGAGGAGG
TGGGGTTGCGAACCCTTGTGATGAAAAACAATGCGGCGGCTGACGTCGCC
CGGGCTGTTAGCACATGAATGAGCGTCAGCAGTCCCGAAGCCGTTCTGGG
ATTGGACTTGAGCCAGGAGGGGGAAGGCACTGAGACTGGGAGTGTGACCA
GGCGTCCTAGCCTCATGAGTCGTCTGTCAAGTGCTGTGGGAACAGAGGGA
GAGCCAGGGACCCCGGGGGCGTTGCTACGGAGGCTTTCTACTTCCCTTCA
ATTCAAACGCAAAGGCTCTAGCACTCCCTTACCGAATGTAGACGAGATTC
CGGCGACATTTCTTGCGTCGTGCAAGGGCAACGTGGAGAAGGCGGGCAAG
AAGTGGCAAGCGTCCAAGCAGTGGCGCGAAGAGAATGATATTGATCACAT
TCTCGAACGACCGCACCCCAACTTTGACACATTGAAGCGTGTCTATCCCG
CTTATTTGCATGGGAGGGACTTGCAGGGTAACTGCATTTCAGTAGAGATA
CCAGGTCTGATGGACGTGAAGCTCATGAAATCCGCGAACTTGACGCCGAA
GGACATGGTCATGCAGATGGCTCTAACTCAAGAGTATATCTGGGAGGAGC
TCACGCCGGGGGATGACAAAACGATCGTCACGTTGATGGACGCCAAGGGA
CTGTCCTTGCTGCGCCTAGGCTCCCCGGATTGTATGTCACTCATTCGGGC
GGCTTCTGAGACGCTCAACAGCCACTACCCCGAACGAGTCCTCCGAATCC
TCGTCATTAACGCTCCTCGTTTCTTCGGGCCCATCTTCAAGCTTCTCTCC
ACCGTCATGCCGGCCTCCCTTCGAGATCAATTCCAAATCTGTTCCTCCGT
CGACCAGTTAGAGAAATTTATCTCGCTTGATGTCCTTCCATCTGAATATG
GGGGGAAATGCCCGTTTAAATTGGGGGAGGCTGAGGAGGAGGTGGGGTTG
CGAACCCTTGTGATGAAAAACAATGCGGCGGCTGACGTCGCCCGGGCTGT
TAGCACATGAATGAGCGTCAGCAGTCCCGAAGCCGTTCTGGGATTGGACT
TGAGCCAGGAGGGGGAAGGCACTGAGACTGGGAGTGTGACCAGGCGTCCT
AGCCTCATGAGTCGTCTGTCAAGTGCTGTGGGAACAGAGGGAGAGCCAGG
GACCCCGGGGGCGTTGCTACGGAGGCTTTCTACTTCCCTTCAATTCAAAC
GCAAAGGCTCTAGCACTCCCTTACCGAATGTAGACGAGATTCCGGCGACA
TTTCTTGCGTCGTGCAAGGGCAACGTGGAGAAGGCGGGCAAGAAGTGGCA
AGCGTCCAAGCAGTGGCGCGAAGAGAATGATATTGATCACATTCTCGAAC
GACCGCACCCCAACTTTGACACATTGAAGCGTGTCTATCCCGCTTATTTG
CATGGGAGGGACTTGCAGGGTAACTGCATTTCAGTAGAGATACCAGGTCT
GATGGACGTGAAGCTCATGAAATCCGCGAACTTGACGCCGAAGGACATGG
TCATGCAGATGGCTCTAACTCAAGAGTATATCTGGGAGGAGCTCACGCCG
GGGGATGACAAAACGATCGTCACGTTGATGGACGCCAAGGGACTGTCCTT
GCTGCGCCTAGGCTCCCCGGATTGTATGTCACTCATTCGGGCGGCTTCTG
AGACGCTCAACAGCCACTACCCCGAACGAGTCCTCCGAATCCTCGTCATT
AACGCTCCTCGTTTCTTCGGGCCCATCTTCAAGCTTCTCTCCACCGTCAT
GCCGGCCTCCCTTCGAGATCAATTCCAAATCTGTTCCTCCGTCGACCAGT
TAGAGAAATTTATCTCGCTTGATGTCCTTCCATCTGAATATGGGGGGAAA
TGCCCGTTTAAATTGGGGGAGGCTGAGGAGGAGGTGGGGTTGCGAACCCT
TGTGATGAAAAACAATGCGGCGGCTGACGTCGCCCGGGCTGTTAGCACAT
GA

Synonyms

Publications