jgi.p|Nanoce1779_2|594008, mRNA_6169 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594008
Unique NamemRNA_6169
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1012
Alignment locationscaffold_14:687608..688619 +

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Properties
Property NameValue
TranscriptId594094
TrackFilteredModels2
ProteinId594008
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:687608..688619 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594008gene_6169Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594008mRNA_6169-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6169CDS_6169Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6169 ID=mRNA_6169|Name=jgi.p|Nanoce1779_2|594008|organism=Nannochloropsis oceanica|type=mRNA|length=1012bp
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGAAGAGAGCACGCCTTCTCCGTGTCCTTACCTTTCCTCCTTCT
CGGCAGTGCCGCCTTTCTCCATCCCTCTAAATCCCTAGCTTCTTCCACCA
CCTCCTTCCTTCTCTCCCTCGATGGAAGCGCCCCCTCTCCCTCTCCCTCG
AGCCTCCCCTCCCTTGCACCCATCACTGATAAAGTCTACTTCGACATGGC
CATTGCTGGCCAACCCGCCGGAACATTTACCATGGGGCTGTTTGGTAAGA
ATTCACCGGAAATAGTGGGAATATTCTTGAAGGTTTTAAACGGCGAGGGG
CAGAGTGCTAGTTATGTGTATTCGACTGTCTGGCGGGTGTTAGGTGGGTC
CTGTATTGATATGGGGAGAGTGGTGGGAGGTGGAGGTAAGAAATTGACGA
AGGAGATAAACGAAAGTGGGGTCATGAGAATCAAAACAGGGAATGCGGCA
GATTGGACGAGAAATACAGAGGTGAATGAATTGAGACATGTGGAGCCTTT
TCTGTTGACGATGAAGAGGGGCGGGGGTACGTTTGAATTTAGTGTGACCA
CCCAAGCGAATGCGGAGCTCGATAAGGACCACGTGGTGTTTGGGAGGCTG
CTCATGAAGGAGGGCGGAGAGGAGGAGAGATTCAAAAAGGGGAATGAGGA
GGTGATCAAGAACATCTTGAATGTTAAGGTCAGCAAGGACGACCCGATTG
CTAGCAAGAAGGTGTTTGCGGCGGCGGGGAAGGGCTTTGATCCCCGGGCC
AAGATCATTTATTTGAATAAGCCGTTGCAGAAGATTGTGGTAACGGCCGC
GGGGATGCTTTGAGGCGCCCATGTGTGTTTGACTGTGTGCGTATGTATGA
GTTTCCCTTTTATAGTTGTCTTCCTTCTCATGTGTGTTTGAGTGTGTGTG
TATGTATGAGTTCCCCTTTTATAGTTATCTTTCTTCTCTCCTCTCATGTC
GTGTAATAGGGC
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protein sequence of jgi.p|Nanoce1779_2|594008

>mRNA_6169-protein ID=mRNA_6169-protein|Name=jgi.p|Nanoce1779_2|594008|organism=Nannochloropsis oceanica|type=polypeptide|length=206bp
MAIAGQPAGTFTMGLFGKNSPEIVGIFLKVLNGEGQSASYVYSTVWRVLG
GSCIDMGRVVGGGGKKLTKEINESGVMRIKTGNAADWTRNTEVNELRHVE
PFLLTMKRGGGTFEFSVTTQANAELDKDHVVFGRLLMKEGGEEERFKKGN
EEVIKNILNVKVSKDDPIASKKVFAAAGKGFDPRAKIIYLNKPLQKIVVT
AAGML*
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mRNA from alignment at scaffold_14:687608..688619+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6169 ID=mRNA_6169|Name=jgi.p|Nanoce1779_2|594008|organism=Nannochloropsis oceanica|type=mRNA|length=1012bp|location=Sequence derived from alignment at scaffold_14:687608..688619+ (Nannochloropsis oceanica)
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGAAGAGAGCACGCCTTCTCCGTGTCCTTACCTTTCCTCCTTCT
CGGCAGTGCCGCCTTTCTCCATCCCTCTAAATCCCTAGCTTCTTCCACCA
CCTCCTTCCTTCTCTCCCTCGATGGAAGCGCCCCCTCTCCCTCTCCCTCG
AGCCTCCCCTCCCTTGCACCCATCACTGATAAAGTCTACTTCGACATGGC
CATTGCTGGCCAACCCGCCGGAACATTTACCATGGGGCTGTTTGGTAAGA
ATTCACCGGAAATAGTGGGAATATTCTTGAAGGTTTTAAACGGCGAGGGG
CAGAGTGCTAGTTATGTGTATTCGACTGTCTGGCGGGTGTTAGGTGGGTC
CTGTATTGATATGGGGAGAGTGGTGGGAGGTGGAGGTAAGAAATTGACGA
AGGAGATAAACGAAAGTGGGGTCATGAGAATCAAAACAGGGAATGCGGCA
GATTGGACGAGAAATACAGAGGTGAATGAATTGAGACATGTGGAGCCTTT
TCTGTTGACGATGAAGAGGGGCGGGGGTACGTTTGAATTTAGTGTGACCA
CCCAAGCGAATGCGGAGCTCGATAAGGACCACGTGGTGTTTGGGAGGCTG
CTCATGAAGGAGGGCGGAGAGGAGGAGAGATTCAAAAAGGGGAATGAGGA
GGTGATCAAGAACATCTTGAATGTTAAGGTCAGCAAGGACGACCCGATTG
CTAGCAAGAAGGTGTTTGCGGCGGCGGGGAAGGGCTTTGATCCCCGGGCC
AAGATCATTTATTTGAATAAGCCGTTGCAGAAGATTGTGGTAACGGCCGC
GGGGATGCTTTGAGGCGCCCATGTGTGTTTGACTGTGTGCGTATGTATGA
GTTTCCCTTTTATAGTTGTCTTCCTTCTCATGTGTGTTTGAGTGTGTGTG
TATGTATGAGTTCCCCTTTTATAGTTATCTTTCTTCTCTCCTCTCATGTC
GTGTAATAGGGC
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Coding sequence (CDS) from alignment at scaffold_14:687608..688619+

>mRNA_6169 ID=mRNA_6169|Name=jgi.p|Nanoce1779_2|594008|organism=Nannochloropsis oceanica|type=CDS|length=618bp|location=Sequence derived from alignment at scaffold_14:687608..688619+ (Nannochloropsis oceanica)
ATGGCCATTGCTGGCCAACCCGCCGGAACATTTACCATGGGGCTGTTTGG
TAAGAATTCACCGGAAATAGTGGGAATATTCTTGAAGGTTTTAAACGGCG
AGGGGCAGAGTGCTAGTTATGTGTATTCGACTGTCTGGCGGGTGTTAGGT
GGGTCCTGTATTGATATGGGGAGAGTGGTGGGAGGTGGAGGTAAGAAATT
GACGAAGGAGATAAACGAAAGTGGGGTCATGAGAATCAAAACAGGGAATG
CGGCAGATTGGACGAGAAATACAGAGGTGAATGAATTGAGACATGTGGAG
CCTTTTCTGTTGACGATGAAGAGGGGCGGGGGTACGTTTGAATTTAGTGT
GACCACCCAAGCGAATGCGGAGCTCGATAAGGACCACGTGGTGTTTGGGA
GGCTGCTCATGAAGGAGGGCGGAGAGGAGGAGAGATTCAAAAAGGGGAAT
GAGGAGGTGATCAAGAACATCTTGAATGTTAAGGTCAGCAAGGACGACCC
GATTGCTAGCAAGAAGGTGTTTGCGGCGGCGGGGAAGGGCTTTGATCCCC
GGGCCAAGATCATTTATTTGAATAAGCCGTTGCAGAAGATTGTGGTAACG
GCCGCGGGGATGCTTTGA
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Synonyms
Publications