jgi.p|Nanoce1779_2|89627, mRNA_6301 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|89627
Unique NamemRNA_6301
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length782
Alignment locationscaffold_15:287164..287945 +

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Properties
Property NameValue
TranscriptId89713
TrackFilteredModels2
ProteinId89627
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:287164..287945 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|89627gene_6301Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|89627mRNA_6301-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6301CDS_6301Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6301 ID=mRNA_6301|Name=jgi.p|Nanoce1779_2|89627|organism=Nannochloropsis oceanica|type=mRNA|length=782bp
TCTGCCTGCTGGAAGCATCCTGCTAATGCCTCGAAGCAGCAACACACACC
AACGGCCATACTCCCCCTACTTACACGGCTCTACATTCCCTCTATGTGCA
TTTACATAGGTCACGCGTCATCGCGTCGTCGTCCTCCCACCTTCCAGCGG
CTGGCCTCTTTTCCTCTCCTCTTCTATCTGCTCCATTACTACCCCCCTCC
CATCCGTCCACGACACAAGAAAGAACCACTCGTAGCAAGGCCTCGCCTTC
TCACCACATCACTACTATGTCGATGAACATTTTCCGCTTGGCGGGAGATA
TGTCGCACGTATTCTCCATCATCATCCTTTTGCTTCGGTTGCAAGTTGCA
AAGAACGCCAATGGCGTCTCTCTCAAGACGCAAGAATTGTTCTTGATCGT
ATTTTGTACTCGGTACCTAGACCTGTTTATACGCTACATTTCTCTCTATA
ACTCCGTGATGAAGATTTTGTACATCGGCTCCACGGCGGGTAAGTCGTTG
AGGGGGGTGGGAGGAAGCGAGGGAGAGAGAGGAAAGGGGAGGGAGGGAGA
ATGGACAGGAGGAAACATGTGAAGCATGTACACAGAGCGTTTCCCACCTG
CTCGTCCGCTTCTTGTAATACACGAAACTCAAGATTGAGATGCATGCATG
ACAGCCGAAGGAAAAGGAAGAGACGCTAATTTCTTCTCAGTGCGTTTATG
CTCTTCTCAACTCCCTCCACCCGTCCCTCTGTTTTTCTCTGTCCCCCTCC
CTCCATTTCTCTCTCCCCCCCTCCCTCCTTTC
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protein sequence of jgi.p|Nanoce1779_2|89627

>mRNA_6301-protein ID=mRNA_6301-protein|Name=jgi.p|Nanoce1779_2|89627|organism=Nannochloropsis oceanica|type=polypeptide|length=102bp
MSMNIFRLAGDMSHVFSIIILLLRLQVAKNANGVSLKTQELFLIVFCTRY
LDLFIRYISLYNSVMKILYIGSTAGKSLRGVGGSEGERGKGREGEWTGGN
M*
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mRNA from alignment at scaffold_15:287164..287945+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6301 ID=mRNA_6301|Name=jgi.p|Nanoce1779_2|89627|organism=Nannochloropsis oceanica|type=mRNA|length=782bp|location=Sequence derived from alignment at scaffold_15:287164..287945+ (Nannochloropsis oceanica)
TCTGCCTGCTGGAAGCATCCTGCTAATGCCTCGAAGCAGCAACACACACC
AACGGCCATACTCCCCCTACTTACACGGCTCTACATTCCCTCTATGTGCA
TTTACATAGGTCACGCGTCATCGCGTCGTCGTCCTCCCACCTTCCAGCGG
CTGGCCTCTTTTCCTCTCCTCTTCTATCTGCTCCATTACTACCCCCCTCC
CATCCGTCCACGACACAAGAAAGAACCACTCGTAGCAAGGCCTCGCCTTC
TCACCACATCACTACTATGTCGATGAACATTTTCCGCTTGGCGGGAGATA
TGTCGCACGTATTCTCCATCATCATCCTTTTGCTTCGGTTGCAAGTTGCA
AAGAACGCCAATGGCGTCTCTCTCAAGACGCAAGAATTGTTCTTGATCGT
ATTTTGTACTCGGTACCTAGACCTGTTTATACGCTACATTTCTCTCTATA
ACTCCGTGATGAAGATTTTGTACATCGGCTCCACGGCGGGTAAGTCGTTG
AGGGGGGTGGGAGGAAGCGAGGGAGAGAGAGGAAAGGGGAGGGAGGGAGA
ATGGACAGGAGGAAACATGTGAAGCATGTACACAGAGCGTTTCCCACCTG
CTCGTCCGCTTCTTGTAATACACGAAACTCAAGATTGAGATGCATGCATG
ACAGCCGAAGGAAAAGGAAGAGACGCTAATTTCTTCTCAGTGCGTTTATG
CTCTTCTCAACTCCCTCCACCCGTCCCTCTGTTTTTCTCTGTCCCCCTCC
CTCCATTTCTCTCTCCCCCCCTCCCTCCTTTC
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Coding sequence (CDS) from alignment at scaffold_15:287164..287945+

>mRNA_6301 ID=mRNA_6301|Name=jgi.p|Nanoce1779_2|89627|organism=Nannochloropsis oceanica|type=CDS|length=306bp|location=Sequence derived from alignment at scaffold_15:287164..287945+ (Nannochloropsis oceanica)
ATGTCGATGAACATTTTCCGCTTGGCGGGAGATATGTCGCACGTATTCTC
CATCATCATCCTTTTGCTTCGGTTGCAAGTTGCAAAGAACGCCAATGGCG
TCTCTCTCAAGACGCAAGAATTGTTCTTGATCGTATTTTGTACTCGGTAC
CTAGACCTGTTTATACGCTACATTTCTCTCTATAACTCCGTGATGAAGAT
TTTGTACATCGGCTCCACGGCGGGTAAGTCGTTGAGGGGGGTGGGAGGAA
GCGAGGGAGAGAGAGGAAAGGGGAGGGAGGGAGAATGGACAGGAGGAAAC
ATGTGA
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Synonyms
Publications