jgi.p|Nanoce1779_2|594495, mRNA_6295 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594495
Unique NamemRNA_6295
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1038
Alignment locationscaffold_15:275330..276581 -

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Properties
Property NameValue
TranscriptId594581
TrackFilteredModels2
ProteinId594495
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:275330..276581 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594495gene_6295Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594495mRNA_6295-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6295CDS_6295Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6295 ID=mRNA_6295|Name=jgi.p|Nanoce1779_2|594495|organism=Nannochloropsis oceanica|type=mRNA|length=1038bp
ACAGAGCAAATGACGGTCCGCTACATGCGAATACATGCCCGAGGCCTTCA
CCCAGGGGCATTGCTGCTTATCCTCCTCTTCCTGGGTGGCCGGGCAGCTT
TCGCTTCATCATCCCCGCTCAGCAACAACAGAATCCCGCCTCATGCCTCC
TTCTTCGCCGCATTTACCTGTACGGCATCTTCCTTTCTCCCTATCTGCCG
ATATAACCCAAGACATAAGCAAGGACGGCAAGTCCACCGTCGTCGTTCGT
CGTCGTCTCTTCAGATGCGGGACGCTAGCATGACCCGGGATTTTTCCGTC
GGGGACAAAGTGCGCGTCGAGCCAGGGGTAGAACTAGACGGCATGGACTG
GGGGGGGTTGGAGGGAACCGTGACGACGACTTGGGTCAAATGTGAAGTGG
ACCCTCACTGCTGCTGTGCCGAGCTTGGGACCGAAGGCCCTATCCGAGTA
GACTTTGTCGCCAGCAATGGGAAGAACGCTGGAAGACTGGGGCCAGGTAA
AGACAAGAACTACAATTTTTTCAATGAGGAAGAACTGGTCAAGCTGATAA
GCGCGGATGTTGAGATTAATGGATGAAGTGGAGATTTAGAGGGGTTACTG
TGTGTAGAAGAGTGTGTGTTAAAATTTGCGCGTGTGGTGATTGTAGATGA
CATCAAGTTTTAAAAGAAAAAAGGTGAATTCGAATTTCTGATCCGTTTAA
ATGTGAAGCCTTTCCCGTATCTCGTTTTGAGATGACTAGGAGCTAGATTA
GCGCAAGAAAGCGAGAGGGAAAGACGGAGCTATGAACCACTCCTCATGGT
TTGCAGTGAGAAGCGTGTCTGATGACGGGGGGAAGGGAAAGAGAGACTGC
AGCTTACGCAAGTGACAGGCTTTCCAAAACTGTATCTGCGACAACACGAA
ATCGAAATACTCACTTTGCTTGGAACGGATTATATCATGACTCTCTGTCC
ATTGCCACGAAACATGAGGCGAACGAGCGGTAAATTTAGAAGGGGGCAAG
GTAGGAGGAGGTGATGTTGAGGCACCGCCGCAACGGTC
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protein sequence of jgi.p|Nanoce1779_2|594495

>mRNA_6295-protein ID=mRNA_6295-protein|Name=jgi.p|Nanoce1779_2|594495|organism=Nannochloropsis oceanica|type=polypeptide|length=189bp
MTVRYMRIHARGLHPGALLLILLFLGGRAAFASSSPLSNNRIPPHASFFA
AFTCTASSFLPICRYNPRHKQGRQVHRRRSSSSLQMRDASMTRDFSVGDK
VRVEPGVELDGMDWGGLEGTVTTTWVKCEVDPHCCCAELGTEGPIRVDFV
ASNGKNAGRLGPGKDKNYNFFNEEELVKLISADVEING*
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mRNA from alignment at scaffold_15:275330..276581-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6295 ID=mRNA_6295|Name=jgi.p|Nanoce1779_2|594495|organism=Nannochloropsis oceanica|type=mRNA|length=1252bp|location=Sequence derived from alignment at scaffold_15:275330..276581- (Nannochloropsis oceanica)
ACAGAGCAAATGACGGTCCGCTACATGCGAATACATGCCCGAGGCCTTCA
CCCAGGGGCATTGCTGCTTATCCTCCTCTTCCTGGGTGGCCGGGCAGCTT
TCGCTTCATCATCCCCGCTCAGCAACAACAGAATCCCGCCTCATGCCTCC
TTCTTCGCCGCATTTACCTGTACGGCATCTTCCTTTCTCCCTATCTGCCG
ATATAACCCAAGACATAAGCAAGGACGGCAAGTCCACCGTCGTCGTTCGT
CGTCGTCTCTTCAGATGCGGGACGCTAGCATGACCCGGGATTTTTCCGTC
GGGGACAAAGTGCGCGTCGAGCCAGGGGTAGAACTAGACGGCATGGACTG
GGGGGGGTTGGAGGGAACCGTGACGACGACTTGGGTCAAGTAAGTCTTGT
TGTGGTTGTACTGTGTCATACTCGCCATCTCCTGTCCGTCAGGGACCGAC
AATTACTTGCCCCTCAGCTCCCTATAACATTCTCTTCACCTCAGTACATT
TACGTCGCACCTTTCACATTCACAACCCCCTCTCCTCCCCACTGCCGTTG
CACCTCACACGAATCATTATCCCTTCTCTTCATCAATCTTTAATCTTTCC
TAGATGTGAAGTGGACCCTCACTGCTGCTGTGCCGAGCTTGGGACCGAAG
GCCCTATCCGAGTAGACTTTGTCGCCAGCAATGGGAAGAACGCTGGAAGA
CTGGGGCCAGGTAAAGACAAGAACTACAATTTTTTCAATGAGGAAGAACT
GGTCAAGCTGATAAGCGCGGATGTTGAGATTAATGGATGAAGTGGAGATT
TAGAGGGGTTACTGTGTGTAGAAGAGTGTGTGTTAAAATTTGCGCGTGTG
GTGATTGTAGATGACATCAAGTTTTAAAAGAAAAAAGGTGAATTCGAATT
TCTGATCCGTTTAAATGTGAAGCCTTTCCCGTATCTCGTTTTGAGATGAC
TAGGAGCTAGATTAGCGCAAGAAAGCGAGAGGGAAAGACGGAGCTATGAA
CCACTCCTCATGGTTTGCAGTGAGAAGCGTGTCTGATGACGGGGGGAAGG
GAAAGAGAGACTGCAGCTTACGCAAGTGACAGGCTTTCCAAAACTGTATC
TGCGACAACACGAAATCGAAATACTCACTTTGCTTGGAACGGATTATATC
ATGACTCTCTGTCCATTGCCACGAAACATGAGGCGAACGAGCGGTAAATT
TAGAAGGGGGCAAGGTAGGAGGAGGTGATGTTGAGGCACCGCCGCAACGG
TC
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Coding sequence (CDS) from alignment at scaffold_15:275330..276581-

>mRNA_6295 ID=mRNA_6295|Name=jgi.p|Nanoce1779_2|594495|organism=Nannochloropsis oceanica|type=CDS|length=1134bp|location=Sequence derived from alignment at scaffold_15:275330..276581- (Nannochloropsis oceanica)
ATGTGAAGTGGACCCTCACTGCTGCTGTGCCGAGCTTGGGACCGAAGGCC
CTATCCGAGTAGACTTTGTCGCCAGCAATGGGAAGAACGCTGGAAGACTG
GGGCCAGGTAAAGACAAGAACTACAATTTTTTCAATGAGGAAGAACTGGT
CAAGCTGATAAGCGCGGATGTTGAGATTAATGGATGAATGACGGTCCGCT
ACATGCGAATACATGCCCGAGGCCTTCACCCAGGGGCATTGCTGCTTATC
CTCCTCTTCCTGGGTGGCCGGGCAGCTTTCGCTTCATCATCCCCGCTCAG
CAACAACAGAATCCCGCCTCATGCCTCCTTCTTCGCCGCATTTACCTGTA
CGGCATCTTCCTTTCTCCCTATCTGCCGATATAACCCAAGACATAAGCAA
GGACGGCAAGTCCACCGTCGTCGTTCGTCGTCGTCTCTTCAGATGCGGGA
CGCTAGCATGACCCGGGATTTTTCCGTCGGGGACAAAGTGCGCGTCGAGC
CAGGGGTAGAACTAGACGGCATGGACTGGGGGGGGTTGGAGGGAACCGTG
ACGACGACTTGGGTCAAATGTGAAGTGGACCCTCACTGCTGCTGTGCCGA
GCTTGGGACCGAAGGCCCTATCCGAGTAGACTTTGTCGCCAGCAATGGGA
AGAACGCTGGAAGACTGGGGCCAGGTAAAGACAAGAACTACAATTTTTTC
AATGAGGAAGAACTGGTCAAGCTGATAAGCGCGGATGTTGAGATTAATGG
ATGAATGACGGTCCGCTACATGCGAATACATGCCCGAGGCCTTCACCCAG
GGGCATTGCTGCTTATCCTCCTCTTCCTGGGTGGCCGGGCAGCTTTCGCT
TCATCATCCCCGCTCAGCAACAACAGAATCCCGCCTCATGCCTCCTTCTT
CGCCGCATTTACCTGTACGGCATCTTCCTTTCTCCCTATCTGCCGATATA
ACCCAAGACATAAGCAAGGACGGCAAGTCCACCGTCGTCGTTCGTCGTCG
TCTCTTCAGATGCGGGACGCTAGCATGACCCGGGATTTTTCCGTCGGGGA
CAAAGTGCGCGTCGAGCCAGGGGTAGAACTAGACGGCATGGACTGGGGGG
GGTTGGAGGGAACCGTGACGACGACTTGGGTCAA
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Synonyms
Publications