jgi.p|Nanoce1779_2|618427, mRNA_11395 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|618427
Unique NamemRNA_11395
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1674
Alignment locationscaffold_156:15068..16933 -

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Properties
Property NameValue
TranscriptId618513
TrackFilteredModels2
ProteinId618427
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_156supercontigscaffold_156:15068..16933 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|618427gene_11395Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|618427mRNA_11395-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11395CDS_11395Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11395 ID=mRNA_11395|Name=jgi.p|Nanoce1779_2|618427|organism=Nannochloropsis oceanica|type=mRNA|length=1674bp
AACAGGCCTGTGTATCTGCCAGACATTGAACGTTTGACAGCTTGACAAGG
GGATGGTCCATCCTTCCATGCGGCCAGACTCTGCTCGTCGTTCCACAGGC
CAGCGTTCTCGGCCGCCAGCACCACCATCAAGTCCACCCCCAGACTACAT
GGCGACGTCGATCCCGATTCCATTCTATCCGTCATCGCTCCGTCCTCCCG
CCAATCAGCTACGACAAAGCCCTGATCCAGCTCCTATTCCTCCTGCTCCT
ACCCCGGCTCTTTTGTCACCCGTCCCTCCGGTGCGCCCTCGACAAGCGAC
CCGCGCCCATGTTAAGATCCGGCAGCGATTCGCGCTGCCTGCAGAACTCA
AAGCAGTACTACAGGGCATGACTCCTCCCGAAAGACCTCGATTTATTGTC
CCTACCCGTCGAAGCTTCAGTGAAAAAGAGGACAAATGTGGAGATCGGAA
GCGTCGCCGACCTGCTTCCCTGCCAGTTCTCCACCCACCGGTGTCCGTGT
CACAATGCTCAGCAGTACCTCCAGAGATGGGCTACTTGGAAAACGCCATG
GCCCGCCTTTCCTTAGATCTACATGATTTCCAGCAGGAGCTTCGCACTCA
ACATCACTACGCCCCAGCGACGGCACCCTTGAGCTGCTGTATGGCCACAG
CGCCCTCTTACAGAGTCCTTTCCACAGCTGCGGCCTCCTTGCCCATACCC
GAAAGGAAAGGGGTCATGAAGCGCTGTGTCAACGACAACAGTGGTAACAA
TGGCAGCTGCAGCAACAATAGCAACAACAATAGCGATAGCACCCAAAGGA
GCAGAAGAAATGGCGGCCCCAGGTTCACTGTGCGAACTGCAGACGGCACA
GAGGTGGTGCTTGACAATAGGGGCGTGGACAGCCGAATGGTGGAGATTCT
AGTGGGGGATTTAACTGGTGTTTATTGCACAGGTTCGCAAACGTACAATG
TGCCACGATTAAGTACTCCTTCGCCATTGGGGAAGGCAGCGGCTTGCACC
GCTACCACGCAGGATGTTTGTACCTCGCCATCCATGTCTTTATTGCCAAC
TCAAGCCAGCGATGCAACGTCCGAGACTGAGGATGGTAGTGTGGCGTCGG
CTGCGAGCTCTGGTTGGTTCCAGAAGCAAGGGGTTCTACAGCAGCATGCT
CCTCCAATTTTCTCCTCTTCTCCGTCTTTGAAGGTGGAAACGCGCTTTGG
AACAGATGAGGTCGACGATGAGAATCACGACGACAACAACGGAGATGCTT
TTTCCTCCCCAGTAGCAGAGTCAACGAGTCTGTCGCTGGCGTCCTTGCCT
ATTGAATGGCCCGTGCCAGCGCCTTCCCCGCTACCCTCGCAGTCGCCTCA
CTCGCAGTCGCCTCACTGCTTTTCGTCCCCAGAATCGTGCTTCCTCCCCT
TTTGTCCCCGAGGGCCGAAATCTTCCTCTTTCTCCTCTTGCTCGATGTCG
TCCTCTTTTGCCTCCTCCTCCTCTTCCTCTTCTCATTGCTCATCTTCCTC
CTCCACCATTTCCGCTTGCTGTCGCACAGTACTGGGAAGAGATCCTGCTT
TTGGCGCCACTTCAACGTGCCCGATCCGTCTTTTACGTTGGTAATTCGCC
ATGAGGAAGAGAAATCTCGGGAAGACAGGCAAAGAAAATATCGTTGGTGA
TACATCACGAGGGGGAAATGTCAC
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protein sequence of jgi.p|Nanoce1779_2|618427

>mRNA_11395-protein ID=mRNA_11395-protein|Name=jgi.p|Nanoce1779_2|618427|organism=Nannochloropsis oceanica|type=polypeptide|length=514bp
MVHPSMRPDSARRSTGQRSRPPAPPSSPPPDYMATSIPIPFYPSSLRPPA
NQLRQSPDPAPIPPAPTPALLSPVPPVRPRQATRAHVKIRQRFALPAELK
AVLQGMTPPERPRFIVPTRRSFSEKEDKCGDRKRRRPASLPVLHPPVSVS
QCSAVPPEMGYLENAMARLSLDLHDFQQELRTQHHYAPATAPLSCCMATA
PSYRVLSTAAASLPIPERKGVMKRCVNDNSGNNGSCSNNSNNNSDSTQRS
RRNGGPRFTVRTADGTEVVLDNRGVDSRMVEILVGDLTGVYCTGSQTYNV
PRLSTPSPLGKAAACTATTQDVCTSPSMSLLPTQASDATSETEDGSVASA
ASSGWFQKQGVLQQHAPPIFSSSPSLKVETRFGTDEVDDENHDDNNGDAF
SSPVAESTSLSLASLPIEWPVPAPSPLPSQSPHSQSPHCFSSPESCFLPF
CPRGPKSSSFSSCSMSSSFASSSSSSSHCSSSSSTISACCRTVLGRDPAF
GATSTCPIRLLRW*
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mRNA from alignment at scaffold_156:15068..16933-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11395 ID=mRNA_11395|Name=jgi.p|Nanoce1779_2|618427|organism=Nannochloropsis oceanica|type=mRNA|length=1866bp|location=Sequence derived from alignment at scaffold_156:15068..16933- (Nannochloropsis oceanica)
AACAGGCCTGTGTATCTGCCAGACATTGAACGTTTGACAGCTTGACAAGG
GGATGGTCCATCCTTCCATGCGGCCAGACTCTGCTCGTCGTTCCACAGGC
CAGCGTTCTCGGCCGCCAGCACCACCATCAAGTCCACCCCCAGACTACAT
GGCGACGTCGATCCCGATTCCATTCTATCCGTCATCGCTCCGTCCTCCCG
CCAATCAGCTACGACAAAGCCCTGATCCAGCTCCTATTCCTCCTGCTCCT
ACCCCGGCTCTTTTGTCACCCGTCCCTCCGGTGCGCCCTCGACAAGCGAC
CCGCGCCCATGTTAAGATCCGGCAGCGATTCGCGCTGCCTGCAGAACTCA
AAGCAGTACTACAGGGCATGACTCCTCCCGAAAGACCTCGATTTATTGTC
CCTACCCGTCGAAGCTTCAGTGAAAAAGAGGACAAATGTGGAGATCGGAA
GCGTCGCCGACCTGCTTCCCTGCCAGTTCTCCACCCACCGGTGTCCGTGT
CACAATGCTCAGCAGTACCTCCAGAGATGGGCTACTTGGAAAACGCCATG
GCCCGCCTTTCCTTAGATCTACATGATTTCCAGCAGGAGCTTCGCACTCA
ACATCACTACGCCCCAGCGACGGCACCCTTGAGCTGCTGTATGGCCACAG
CGCCCTCTTACAGAGTCCTTTCCACAGCTGCGGCCTCCTTGCCCATACCC
GAAAGGAAAGGGGTCATGAAGCGCTGTGTCAACGACAACAGTGGTAACAA
TGGCAGCTGCAGCAACAATAGCAACAACAATAGCGATAGCACCCAAAGGA
GCAGAAGAAATGGCGGCCCCAGGTTCACTGTGCGAACTGCAGACGGCACA
GAGGTGGTGCTTGACAATAGGGGCGTGGACAGCCGAATGGTGGAGATTCT
AGTGGGGGATTTAACTGGTGTTTATTGCACAGGTTCGCAAACGTACAATG
TGCCACGATTAAGTACTCCTTCGCCATTGGGGAAGGCAGCGGCTTGCACC
GCTACCACGCAGGATGTTTGTACCTCGCCATCCATGTCTTTATTGCCAAC
TCAAGCCAGCGATGCAACGTCCGAGACTGAGGATGGTAGTGTGGCGTCGG
CTGCGAGCTCTGGTTGGTTCCAGAAGCAAGGGGTTCTACAGCAGCATGCT
CCTCCAATTTTCTCCTCTTCTCCGTCTTTGAAGGTGGAAACGCGCTTTGG
AACAGATGAGGTCGACGATGAGAATCACGACGACAACAACGGAGATGCTT
TTTCCTCCCCAGTAGCAGAGTCAACGAGTCTGTCGCTGGCGTCCTTGCCT
ATTGAATGGCCCGTGCCAGCGCCTTCCCCGCTACCCTCGCAGTCGCCTCA
CTCGCAGTCGCCTCACTGCTTTTCGTCCCCAGAATCGTGCTTCCTCCCCT
TTTGTCCCCGAGGGCCGAAGTGTGGAGAATGAGAGGGAGAAAGTGACTGT
TGAGGAGGAGAGCAGAATCAGGACCAAGGGCAGGAAACAAGCATTTCCAA
AAGCAGCCGAAGCACCAGCCGGTGTAGCAGCTATTATTATGATTGCTCCT
TTCCCTCTATGTTAGTGGCGGGTGATGGTGATGAAGATGGGTACAGCACA
GACTCCTCCAGATCTTCCTCTTTCTCCTCTTGCTCGATGTCGTCCTCTTT
TGCCTCCTCCTCCTCTTCCTCTTCTCATTGCTCATCTTCCTCCTCCACCA
TTTCCGCTTGCTGTCGCACAGTACTGGGAAGAGATCCTGCTTTTGGCGCC
ACTTCAACGTGCCCGATCCGTCTTTTACGTTGGTAATTCGCCATGAGGAA
GAGAAATCTCGGGAAGACAGGCAAAGAAAATATCGTTGGTGATACATCAC
GAGGGGGAAATGTCAC
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Coding sequence (CDS) from alignment at scaffold_156:15068..16933-

>mRNA_11395 ID=mRNA_11395|Name=jgi.p|Nanoce1779_2|618427|organism=Nannochloropsis oceanica|type=CDS|length=3084bp|location=Sequence derived from alignment at scaffold_156:15068..16933- (Nannochloropsis oceanica)
ATCTTCCTCTTTCTCCTCTTGCTCGATGTCGTCCTCTTTTGCCTCCTCCT
CCTCTTCCTCTTCTCATTGCTCATCTTCCTCCTCCACCATTTCCGCTTGC
TGTCGCACAGTACTGGGAAGAGATCCTGCTTTTGGCGCCACTTCAACGTG
CCCGATCCGTCTTTTACGTTGGTAAATGGTCCATCCTTCCATGCGGCCAG
ACTCTGCTCGTCGTTCCACAGGCCAGCGTTCTCGGCCGCCAGCACCACCA
TCAAGTCCACCCCCAGACTACATGGCGACGTCGATCCCGATTCCATTCTA
TCCGTCATCGCTCCGTCCTCCCGCCAATCAGCTACGACAAAGCCCTGATC
CAGCTCCTATTCCTCCTGCTCCTACCCCGGCTCTTTTGTCACCCGTCCCT
CCGGTGCGCCCTCGACAAGCGACCCGCGCCCATGTTAAGATCCGGCAGCG
ATTCGCGCTGCCTGCAGAACTCAAAGCAGTACTACAGGGCATGACTCCTC
CCGAAAGACCTCGATTTATTGTCCCTACCCGTCGAAGCTTCAGTGAAAAA
GAGGACAAATGTGGAGATCGGAAGCGTCGCCGACCTGCTTCCCTGCCAGT
TCTCCACCCACCGGTGTCCGTGTCACAATGCTCAGCAGTACCTCCAGAGA
TGGGCTACTTGGAAAACGCCATGGCCCGCCTTTCCTTAGATCTACATGAT
TTCCAGCAGGAGCTTCGCACTCAACATCACTACGCCCCAGCGACGGCACC
CTTGAGCTGCTGTATGGCCACAGCGCCCTCTTACAGAGTCCTTTCCACAG
CTGCGGCCTCCTTGCCCATACCCGAAAGGAAAGGGGTCATGAAGCGCTGT
GTCAACGACAACAGTGGTAACAATGGCAGCTGCAGCAACAATAGCAACAA
CAATAGCGATAGCACCCAAAGGAGCAGAAGAAATGGCGGCCCCAGGTTCA
CTGTGCGAACTGCAGACGGCACAGAGGTGGTGCTTGACAATAGGGGCGTG
GACAGCCGAATGGTGGAGATTCTAGTGGGGGATTTAACTGGTGTTTATTG
CACAGGTTCGCAAACGTACAATGTGCCACGATTAAGTACTCCTTCGCCAT
TGGGGAAGGCAGCGGCTTGCACCGCTACCACGCAGGATGTTTGTACCTCG
CCATCCATGTCTTTATTGCCAACTCAAGCCAGCGATGCAACGTCCGAGAC
TGAGGATGGTAGTGTGGCGTCGGCTGCGAGCTCTGGTTGGTTCCAGAAGC
AAGGGGTTCTACAGCAGCATGCTCCTCCAATTTTCTCCTCTTCTCCGTCT
TTGAAGGTGGAAACGCGCTTTGGAACAGATGAGGTCGACGATGAGAATCA
CGACGACAACAACGGAGATGCTTTTTCCTCCCCAGTAGCAGAGTCAACGA
GTCTGTCGCTGGCGTCCTTGCCTATTGAATGGCCCGTGCCAGCGCCTTCC
CCGCTACCCTCGCAGTCGCCTCACTCGCAGTCGCCTCACTGCTTTTCGTC
CCCAGAATCGTGCTTCCTCCCCTTTTGTCCCCGAGGGCCGAAATCTTCCT
CTTTCTCCTCTTGCTCGATGTCGTCCTCTTTTGCCTCCTCCTCCTCTTCC
TCTTCTCATTGCTCATCTTCCTCCTCCACCATTTCCGCTTGCTGTCGCAC
AGTACTGGGAAGAGATCCTGCTTTTGGCGCCACTTCAACGTGCCCGATCC
GTCTTTTACGTTGGTAAATGGTCCATCCTTCCATGCGGCCAGACTCTGCT
CGTCGTTCCACAGGCCAGCGTTCTCGGCCGCCAGCACCACCATCAAGTCC
ACCCCCAGACTACATGGCGACGTCGATCCCGATTCCATTCTATCCGTCAT
CGCTCCGTCCTCCCGCCAATCAGCTACGACAAAGCCCTGATCCAGCTCCT
ATTCCTCCTGCTCCTACCCCGGCTCTTTTGTCACCCGTCCCTCCGGTGCG
CCCTCGACAAGCGACCCGCGCCCATGTTAAGATCCGGCAGCGATTCGCGC
TGCCTGCAGAACTCAAAGCAGTACTACAGGGCATGACTCCTCCCGAAAGA
CCTCGATTTATTGTCCCTACCCGTCGAAGCTTCAGTGAAAAAGAGGACAA
ATGTGGAGATCGGAAGCGTCGCCGACCTGCTTCCCTGCCAGTTCTCCACC
CACCGGTGTCCGTGTCACAATGCTCAGCAGTACCTCCAGAGATGGGCTAC
TTGGAAAACGCCATGGCCCGCCTTTCCTTAGATCTACATGATTTCCAGCA
GGAGCTTCGCACTCAACATCACTACGCCCCAGCGACGGCACCCTTGAGCT
GCTGTATGGCCACAGCGCCCTCTTACAGAGTCCTTTCCACAGCTGCGGCC
TCCTTGCCCATACCCGAAAGGAAAGGGGTCATGAAGCGCTGTGTCAACGA
CAACAGTGGTAACAATGGCAGCTGCAGCAACAATAGCAACAACAATAGCG
ATAGCACCCAAAGGAGCAGAAGAAATGGCGGCCCCAGGTTCACTGTGCGA
ACTGCAGACGGCACAGAGGTGGTGCTTGACAATAGGGGCGTGGACAGCCG
AATGGTGGAGATTCTAGTGGGGGATTTAACTGGTGTTTATTGCACAGGTT
CGCAAACGTACAATGTGCCACGATTAAGTACTCCTTCGCCATTGGGGAAG
GCAGCGGCTTGCACCGCTACCACGCAGGATGTTTGTACCTCGCCATCCAT
GTCTTTATTGCCAACTCAAGCCAGCGATGCAACGTCCGAGACTGAGGATG
GTAGTGTGGCGTCGGCTGCGAGCTCTGGTTGGTTCCAGAAGCAAGGGGTT
CTACAGCAGCATGCTCCTCCAATTTTCTCCTCTTCTCCGTCTTTGAAGGT
GGAAACGCGCTTTGGAACAGATGAGGTCGACGATGAGAATCACGACGACA
ACAACGGAGATGCTTTTTCCTCCCCAGTAGCAGAGTCAACGAGTCTGTCG
CTGGCGTCCTTGCCTATTGAATGGCCCGTGCCAGCGCCTTCCCCGCTACC
CTCGCAGTCGCCTCACTCGCAGTCGCCTCACTGCTTTTCGTCCCCAGAAT
CGTGCTTCCTCCCCTTTTGTCCCCGAGGGCCGAA
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Synonyms
Publications