jgi.p|Nanoce1779_2|595525, mRNA_7076 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595525
Unique NamemRNA_7076
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1518
Alignment locationscaffold_16:233928..235907 -

Link to JBrowse

Properties
Property NameValue
TranscriptId595611
TrackFilteredModels2
ProteinId595525
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:233928..235907 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595525gene_7076Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595525mRNA_7076-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7076CDS_7076Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7076 ID=mRNA_7076|Name=jgi.p|Nanoce1779_2|595525|organism=Nannochloropsis oceanica|type=mRNA|length=1518bp
CAGAAGGTCGAGCAGGAGGAGCAGGAGGCGCTAGAGGTGCAGAAGTAGCA
GGAGAAGGTGCCTTGGTGCTTGATCAAGAGCCATGGCAATGGAGTACTCC
GACGAGCAGCAAATGTTGACCGATCTTCCAAAACCCCGCATCATCCTCAT
GGGGCCCCGTCGCAGCGGTAAGACCAGCATCGAGCGAGTGGTCTTCCAAA
AAATGAGCCCTCACGAGACCCTCTTCTTAGAGAGCACCCACAGCCTAGAC
GTGAAGCTGATAAATAATAATCCTTTCGTCCAGTTTCAGATATGGGACTT
TCCCGGTGATTTCTCTTTTACATCCGCTTCCTCCTCCTCTTCTAACGAGG
AAGGAGAAATGGATGAGGGAGGGGTGGAAGGAAGGGCGGTCGAGGTGTTT
GGGTCGTGTGCTGCGCTTGTCTATGTTTTGGACGCCCAGGACGAGCCGTA
TCAGGAGGCGCTATCGAGGCTGGTGGAGGTAGTGATGAGGGCGCACAGTA
TTAACAGCTCGGTGTGTGTCACGGTGTTTATTCACAAGGTCGACGGGGAC
TTGTTCCTGTCGGATGAGCATAAAATCGACTGTCAACGAGACGTTCAGCA
GCGGATCGCACACGAGTTGGCCGACGCCGGCTTGGAGCAGATAGAGATGT
CCTACTTCTTGACCTCTATATACGACCATTCGATCTTCGAAGCCTTCTCG
AAGGTCGTCCAACGGTTGACCCCGCAACTGCCGGCGTTAGAGAATCTGTT
GAATTATTTGATCAGTGCATGTAAGATGGAGAAGAGTTTTTTGTTCGACG
TCGTGAGCAAGTTGTATGTGGCGACGGATTCGAACCCAGTGGACATGCAG
AGCTATGAGCTGTGCGCGGACATGATCGACGTGGTGTTGGACGTCTCGTG
TATTTATGGGGTAAGCTACGATGCTGAAGGAGGAACAGAGACTTCTCCTT
ATGACTCTGATTCTTCCTCCACTATTCATCTAAGCAACGGCATGGTCCTT
TATTTGAGGGAGGTGGACGAGTAAGTGGGCAGCGAGGGAGGGAGGGTGGG
AGGGAGGAAACTCTTTCTCGAAGACGGACTGGGGCATGCAGGTCCGTGTT
CGCACACGTCTCACCCCACCCCTTGCTTCCACGCAGCAATCTACCTCTTG
TCGATTTCTGCGTGAGAACAAGTTCAAAAAGACAAGAAGGTCTGATCGGT
CTAAGCATCAACTGCCTCAAGACCTCGTGCTCATTCCACACCTCACTCTG
CTCTCCTCCTCCCCCTTTCTCCTTTCCCCTTTTGGTGACGAGTGAACAGC
TATCTCGCTCTTGTCGGTCTCCTGCGCCAAGAGAACTTCCAGAAAAAGGG
TCTTATTGACTTTAACATCGATTGTCTTAAAACCTCTCTGCAAAGGCTCG
TAGTTGTTGATGATGGGAGTATAGGAGGAGCAGGTGGGGGAGGAGAGGGA
GGGAAAGGAGGAAAGGAGGGGGCGTTGACATGCAACAATTCACCGTTTTC
GAATAGTGATGATCGTGG
back to top

protein sequence of jgi.p|Nanoce1779_2|595525

>mRNA_7076-protein ID=mRNA_7076-protein|Name=jgi.p|Nanoce1779_2|595525|organism=Nannochloropsis oceanica|type=polypeptide|length=314bp
MAMEYSDEQQMLTDLPKPRIILMGPRRSGKTSIERVVFQKMSPHETLFLE
STHSLDVKLINNNPFVQFQIWDFPGDFSFTSASSSSSNEEGEMDEGGVEG
RAVEVFGSCAALVYVLDAQDEPYQEALSRLVEVVMRAHSINSSVCVTVFI
HKVDGDLFLSDEHKIDCQRDVQQRIAHELADAGLEQIEMSYFLTSIYDHS
IFEAFSKVVQRLTPQLPALENLLNYLISACKMEKSFLFDVVSKLYVATDS
NPVDMQSYELCADMIDVVLDVSCIYGVSYDAEGGTETSPYDSDSSSTIHL
SNGMVLYLREVDE*
back to top

mRNA from alignment at scaffold_16:233928..235907-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7076 ID=mRNA_7076|Name=jgi.p|Nanoce1779_2|595525|organism=Nannochloropsis oceanica|type=mRNA|length=1980bp|location=Sequence derived from alignment at scaffold_16:233928..235907- (Nannochloropsis oceanica)
CAGAAGGTCGAGCAGGAGGAGCAGGAGGCGCTAGAGGTGCAGAAGTAGCA
GGAGAAGGTGCCTTGGTGCTTGATCAAGAGCCATGGCAATGGAGTACTCC
GACGAGCAGCAAATGGTACGTGCGCCCTCTGTCCCTCCCTCACTTCTACC
CTCCCTCATTTCTTCCTGACAGTCAACATGCCTGCCGTCTCCACTCATTC
ATTCAATAGTGATACGGCTCTTATATGTGTGTGAGTCGGTTGGCGGTGGT
AATAGTGCCTGGGGTGTTAAGGCGGATAGAGTTAGCGCCCTAACCCAGCC
TTCCTTGTCTCCCTCCGTCCCCTCCTCAGTCCCTCCCTCTCATGTCCTAC
CATCTATTGTCTCCATTTTTAACAGTTGACCGATCTTCCAAAACCCCGCA
TCATCCTCATGGGGCCCCGTCGCAGCGGTAAGACCAGCATCGAGCGAGTG
GTCTTCCAAAAAATGAGCCCTCACGAGACCCTCTTCTTAGAGAGCACCCA
CAGCCTAGACGTGAAGCTGATAAATAATAATCCTTTCGTCCAGTTTCAGA
TATGGGACTTTCCCGGTGATTTCTCTTTTACATCCGCTTCCTCCTCCTCT
TCTAACGAGGAAGGAGAAATGGATGAGGGAGGGGTGGAAGGAAGGGCGGT
CGAGGTGTTTGGGTCGTGTGCTGCGCTTGTCTATGTTTTGGACGCCCAGG
ACGAGCCGTATCAGGAGGCGCTATCGAGGCTGGTGGAGGTAGTGATGAGG
GCGCACAGTATTAACAGCTCGGTGTGTGTCACGGTGTTTATTCACAAGGT
CGACGGGGACTTGTTCCTGTCGGATGAGCATAAAATCGACTGTCAACGAG
ACGTTCAGCAGCGGATCGCACACGAGTTGGCCGACGCCGGCTTGGAGCAG
ATAGAGATGTCCTACTTCTTGACCTCTATATACGACCATTCGATCTTCGA
AGCCTTCTCGAAGGTCGTCCAACGGTTGACCCCGCAACTGCCGGCGTTAG
AGAATCTGTTGAATTATTTGATCAGTGCATGTAAGATGGAGAAGAGTTTT
TTGTTCGACGTCGTGAGCAAGTTGTATGTGGCGACGGATTCGAACCCAGT
GGACATGCAGAGCTATGAGCTGTGCGCGGACATGATCGACGTGGTGTTGG
ACGTCTCGTGTATTTATGGGTGAGGAGGGAGGAAGGGAGGGAGGGATAGG
GGGCCCTGTCGTGGTGCCGTGAAAATTGTCTCCGCGGGTTATTTTCTCTC
TTTTGCTTATCCTCTTTGGTTTACTAGATAGGCATACCTTACAGCCTTTT
CGCTTCCGGCTTCCTGTCATATCACTCAGTAACCTCCCTACCCTCCCTCC
TTCTCTCCCTCCCTCCCTTAGGGTAAGCTACGATGCTGAAGGAGGAACAG
AGACTTCTCCTTATGACTCTGATTCTTCCTCCACTATTCATCTAAGCAAC
GGCATGGTCCTTTATTTGAGGGAGGTGGACGAGTAAGTGGGCAGCGAGGG
AGGGAGGGTGGGAGGGAGGAAACTCTTTCTCGAAGACGGACTGGGGCATG
CAGGTCCGTGTTCGCACACGTCTCACCCCACCCCTTGCTTCCACGCAGCA
ATCTACCTCTTGTCGATTTCTGCGTGAGAACAAGTTCAAAAAGACAAGAA
GGTCTGATCGGTCTAAGCATCAACTGCCTCAAGACCTCGTGCTCATTCCA
CACCTCACTCTGCTCTCCTCCTCCCCCTTTCTCCTTTCCCCTTTTGGTGA
CGAGTGAACAGCTATCTCGCTCTTGTCGGTCTCCTGCGCCAAGAGAACTT
CCAGAAAAAGGGTCTTATTGACTTTAACATCGATTGTCTTAAAACCTCTC
TGCAAAGGCTCGTAGTTGTTGATGATGGGAGTATAGGAGGAGCAGGTGGG
GGAGGAGAGGGAGGGAAAGGAGGAAAGGAGGGGGCGTTGACATGCAACAA
TTCACCGTTTTCGAATAGTGATGATCGTGG
back to top

Coding sequence (CDS) from alignment at scaffold_16:233928..235907-

>mRNA_7076 ID=mRNA_7076|Name=jgi.p|Nanoce1779_2|595525|organism=Nannochloropsis oceanica|type=CDS|length=2826bp|location=Sequence derived from alignment at scaffold_16:233928..235907- (Nannochloropsis oceanica)
GGTAAGCTACGATGCTGAAGGAGGAACAGAGACTTCTCCTTATGACTCTG
ATTCTTCCTCCACTATTCATCTAAGCAACGGCATGGTCCTTTATTTGAGG
GAGGTGGACGAGTAATTGACCGATCTTCCAAAACCCCGCATCATCCTCAT
GGGGCCCCGTCGCAGCGGTAAGACCAGCATCGAGCGAGTGGTCTTCCAAA
AAATGAGCCCTCACGAGACCCTCTTCTTAGAGAGCACCCACAGCCTAGAC
GTGAAGCTGATAAATAATAATCCTTTCGTCCAGTTTCAGATATGGGACTT
TCCCGGTGATTTCTCTTTTACATCCGCTTCCTCCTCCTCTTCTAACGAGG
AAGGAGAAATGGATGAGGGAGGGGTGGAAGGAAGGGCGGTCGAGGTGTTT
GGGTCGTGTGCTGCGCTTGTCTATGTTTTGGACGCCCAGGACGAGCCGTA
TCAGGAGGCGCTATCGAGGCTGGTGGAGGTAGTGATGAGGGCGCACAGTA
TTAACAGCTCGGTGTGTGTCACGGTGTTTATTCACAAGGTCGACGGGGAC
TTGTTCCTGTCGGATGAGCATAAAATCGACTGTCAACGAGACGTTCAGCA
GCGGATCGCACACGAGTTGGCCGACGCCGGCTTGGAGCAGATAGAGATGT
CCTACTTCTTGACCTCTATATACGACCATTCGATCTTCGAAGCCTTCTCG
AAGGTCGTCCAACGGTTGACCCCGCAACTGCCGGCGTTAGAGAATCTGTT
GAATTATTTGATCAGTGCATGTAAGATGGAGAAGAGTTTTTTGTTCGACG
TCGTGAGCAAGTTGTATGTGGCGACGGATTCGAACCCAGTGGACATGCAG
AGCTATGAGCTGTGCGCGGACATGATCGACGTGGTGTTGGACGTCTCGTG
TATTTATGGATGGCAATGGAGTACTCCGACGAGCAGCAAATGGGTAAGCT
ACGATGCTGAAGGAGGAACAGAGACTTCTCCTTATGACTCTGATTCTTCC
TCCACTATTCATCTAAGCAACGGCATGGTCCTTTATTTGAGGGAGGTGGA
CGAGTAATTGACCGATCTTCCAAAACCCCGCATCATCCTCATGGGGCCCC
GTCGCAGCGGTAAGACCAGCATCGAGCGAGTGGTCTTCCAAAAAATGAGC
CCTCACGAGACCCTCTTCTTAGAGAGCACCCACAGCCTAGACGTGAAGCT
GATAAATAATAATCCTTTCGTCCAGTTTCAGATATGGGACTTTCCCGGTG
ATTTCTCTTTTACATCCGCTTCCTCCTCCTCTTCTAACGAGGAAGGAGAA
ATGGATGAGGGAGGGGTGGAAGGAAGGGCGGTCGAGGTGTTTGGGTCGTG
TGCTGCGCTTGTCTATGTTTTGGACGCCCAGGACGAGCCGTATCAGGAGG
CGCTATCGAGGCTGGTGGAGGTAGTGATGAGGGCGCACAGTATTAACAGC
TCGGTGTGTGTCACGGTGTTTATTCACAAGGTCGACGGGGACTTGTTCCT
GTCGGATGAGCATAAAATCGACTGTCAACGAGACGTTCAGCAGCGGATCG
CACACGAGTTGGCCGACGCCGGCTTGGAGCAGATAGAGATGTCCTACTTC
TTGACCTCTATATACGACCATTCGATCTTCGAAGCCTTCTCGAAGGTCGT
CCAACGGTTGACCCCGCAACTGCCGGCGTTAGAGAATCTGTTGAATTATT
TGATCAGTGCATGTAAGATGGAGAAGAGTTTTTTGTTCGACGTCGTGAGC
AAGTTGTATGTGGCGACGGATTCGAACCCAGTGGACATGCAGAGCTATGA
GCTGTGCGCGGACATGATCGACGTGGTGTTGGACGTCTCGTGTATTTATG
GATGGCAATGGAGTACTCCGACGAGCAGCAAATGGGTAAGCTACGATGCT
GAAGGAGGAACAGAGACTTCTCCTTATGACTCTGATTCTTCCTCCACTAT
TCATCTAAGCAACGGCATGGTCCTTTATTTGAGGGAGGTGGACGAGTAAT
TGACCGATCTTCCAAAACCCCGCATCATCCTCATGGGGCCCCGTCGCAGC
GGTAAGACCAGCATCGAGCGAGTGGTCTTCCAAAAAATGAGCCCTCACGA
GACCCTCTTCTTAGAGAGCACCCACAGCCTAGACGTGAAGCTGATAAATA
ATAATCCTTTCGTCCAGTTTCAGATATGGGACTTTCCCGGTGATTTCTCT
TTTACATCCGCTTCCTCCTCCTCTTCTAACGAGGAAGGAGAAATGGATGA
GGGAGGGGTGGAAGGAAGGGCGGTCGAGGTGTTTGGGTCGTGTGCTGCGC
TTGTCTATGTTTTGGACGCCCAGGACGAGCCGTATCAGGAGGCGCTATCG
AGGCTGGTGGAGGTAGTGATGAGGGCGCACAGTATTAACAGCTCGGTGTG
TGTCACGGTGTTTATTCACAAGGTCGACGGGGACTTGTTCCTGTCGGATG
AGCATAAAATCGACTGTCAACGAGACGTTCAGCAGCGGATCGCACACGAG
TTGGCCGACGCCGGCTTGGAGCAGATAGAGATGTCCTACTTCTTGACCTC
TATATACGACCATTCGATCTTCGAAGCCTTCTCGAAGGTCGTCCAACGGT
TGACCCCGCAACTGCCGGCGTTAGAGAATCTGTTGAATTATTTGATCAGT
GCATGTAAGATGGAGAAGAGTTTTTTGTTCGACGTCGTGAGCAAGTTGTA
TGTGGCGACGGATTCGAACCCAGTGGACATGCAGAGCTATGAGCTGTGCG
CGGACATGATCGACGTGGTGTTGGACGTCTCGTGTATTTATGGATGGCAA
TGGAGTACTCCGACGAGCAGCAAATG
back to top
Synonyms
Publications