jgi.p|Nanoce1779_2|595819, mRNA_7159 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595819
Unique NamemRNA_7159
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1512
Alignment locationscaffold_16:421420..422931 -

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Properties
Property NameValue
TranscriptId595905
TrackFilteredModels2
ProteinId595819
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:421420..422931 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595819gene_7159Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595819mRNA_7159-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7159CDS_7159Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7159 ID=mRNA_7159|Name=jgi.p|Nanoce1779_2|595819|organism=Nannochloropsis oceanica|type=mRNA|length=1512bp
GATGAGGGTGGAGGGCGTGGGGGAGGAAGGACGGGCAGTGCTCGTGGGGG
GGCTCGAGGTGTGGCTTCGATGGCAGTTGCATGTCTTTGGCCAAGCGGCG
TTGGCAGCGGCGGAAGCCACAGGGGTACCTCTTCTGTTACCCAAGGCCAT
GCTGTCGTCGCTGGCGTGGGTCGAGGAGACCTTGCTCCCGACTGCGTTGC
AGATGGACTCGCCCTCCCTCCCTTTTTCGTCCTCGTCTGACTTCGAGCAG
GTAGGGCCGCTTTCCCCTCCTGTCAGGCGCCCACGCACCACCACCACCAT
CACCACCACAAGCAGCAGCAGCAACCGCAACGAGCAGGAGAAGGAGGCAA
AGACGACGTTTGCACTGGAGCTCTTCGCGGCCAGCATGATGGTGGTGAGT
GATTGGATCGTTGTGCTACCTGATGCAGCTGTCGAGGTGACGAAAAAGGC
TCAGCTCTGGTCAACCCATTTCTTCCTGCCGGGCCTGGCCGAGGAAAGGG
GTGATAACGAGGGTGAAGACGAGGCCAAGAACCGCCGATGTGCGACCTTG
ACCCTCCTTCCTCAGCTTTGTCGTCTTGCGTACCAACTCGGGTTGCAAGA
GACGCGGCAGCAGCAGCAGGGATCGCAGCAGCAGCAGGAGGAAGAAGGGA
GGATTGCGCTTCCTCCCTCTTTGGTGGAAGTGCTTGTGAGAGCGGTTGAT
TTTAAGGGGGAGGAAATGCCTTGGCATCGTTATCAGGACACGCATGTTGA
TTCCTACCGGTGTCTAGCGGGGCTGTTGGGACTGTACGGACGAGTGAGAA
GCACGAGGCCGGCGTTGACGTCGTTGGTGAATCGACTGACGAGTTTGTGT
GTCCAGGAATTGGAGGAGGGCAGGAAGGAGGAGGGGGAGCCATCGGCAAG
GGCCCGGGCGTTGTGTGCGGTGCTGGTGCGAGCGACGCCTGCTCTGACCG
TCGCCGTCAGCCAGACCTTGGCTGATCTGAAGGCAACGGTGGGAGAGGTA
GCAACCGCCGCCGCTGCTTCCTCTGTAGAGGAGGGGATGGTAAATGACGT
GGACACGACGAAGGAGGAGGTACAGGTGACGTTGCGGGCGCGGTTGTTGT
CTGTGTTGTTTGAATCGGCGGCGGAGAAGGCAAGGAAGACGCTATTGCCC
AAGGTGGTTCGGTCGCTGGATGCAACGTTGGAGGGAGCGAAAGAGGCAGC
GCCGGCTTCGGAGGGAGTGGTGCAGATTGCAAACACAATTGAAGCTTTGG
GGGAGAATTTGCAGCGGTTGGCTGTGGAGAGTAGTTAGGATAGAGATGGG
AAGAAGGAGGGAGAGACGGGCTTACTCAAAAAAATAAAGTATCACTAATG
TTACTGGTGGATTGCGCACGAGAAGGTAAAAAGAGCATAAGGACAAAGGA
CTGAATGTATATGGCACAGGGTGACATATACTTGCGGCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCCCTCTCTCTC
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protein sequence of jgi.p|Nanoce1779_2|595819

>mRNA_7159-protein ID=mRNA_7159-protein|Name=jgi.p|Nanoce1779_2|595819|organism=Nannochloropsis oceanica|type=polypeptide|length=427bp
MRVEGVGEEGRAVLVGGLEVWLRWQLHVFGQAALAAAEATGVPLLLPKAM
LSSLAWVEETLLPTALQMDSPSLPFSSSSDFEQVGPLSPPVRRPRTTTTI
TTTSSSSNRNEQEKEAKTTFALELFAASMMVVSDWIVVLPDAAVEVTKKA
QLWSTHFFLPGLAEERGDNEGEDEAKNRRCATLTLLPQLCRLAYQLGLQE
TRQQQQGSQQQQEEEGRIALPPSLVEVLVRAVDFKGEEMPWHRYQDTHVD
SYRCLAGLLGLYGRVRSTRPALTSLVNRLTSLCVQELEEGRKEEGEPSAR
ARALCAVLVRATPALTVAVSQTLADLKATVGEVATAAAASSVEEGMVNDV
DTTKEEVQVTLRARLLSVLFESAAEKARKTLLPKVVRSLDATLEGAKEAA
PASEGVVQIANTIEALGENLQRLAVES
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mRNA from alignment at scaffold_16:421420..422931-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7159 ID=mRNA_7159|Name=jgi.p|Nanoce1779_2|595819|organism=Nannochloropsis oceanica|type=mRNA|length=1512bp|location=Sequence derived from alignment at scaffold_16:421420..422931- (Nannochloropsis oceanica)
GATGAGGGTGGAGGGCGTGGGGGAGGAAGGACGGGCAGTGCTCGTGGGGG
GGCTCGAGGTGTGGCTTCGATGGCAGTTGCATGTCTTTGGCCAAGCGGCG
TTGGCAGCGGCGGAAGCCACAGGGGTACCTCTTCTGTTACCCAAGGCCAT
GCTGTCGTCGCTGGCGTGGGTCGAGGAGACCTTGCTCCCGACTGCGTTGC
AGATGGACTCGCCCTCCCTCCCTTTTTCGTCCTCGTCTGACTTCGAGCAG
GTAGGGCCGCTTTCCCCTCCTGTCAGGCGCCCACGCACCACCACCACCAT
CACCACCACAAGCAGCAGCAGCAACCGCAACGAGCAGGAGAAGGAGGCAA
AGACGACGTTTGCACTGGAGCTCTTCGCGGCCAGCATGATGGTGGTGAGT
GATTGGATCGTTGTGCTACCTGATGCAGCTGTCGAGGTGACGAAAAAGGC
TCAGCTCTGGTCAACCCATTTCTTCCTGCCGGGCCTGGCCGAGGAAAGGG
GTGATAACGAGGGTGAAGACGAGGCCAAGAACCGCCGATGTGCGACCTTG
ACCCTCCTTCCTCAGCTTTGTCGTCTTGCGTACCAACTCGGGTTGCAAGA
GACGCGGCAGCAGCAGCAGGGATCGCAGCAGCAGCAGGAGGAAGAAGGGA
GGATTGCGCTTCCTCCCTCTTTGGTGGAAGTGCTTGTGAGAGCGGTTGAT
TTTAAGGGGGAGGAAATGCCTTGGCATCGTTATCAGGACACGCATGTTGA
TTCCTACCGGTGTCTAGCGGGGCTGTTGGGACTGTACGGACGAGTGAGAA
GCACGAGGCCGGCGTTGACGTCGTTGGTGAATCGACTGACGAGTTTGTGT
GTCCAGGAATTGGAGGAGGGCAGGAAGGAGGAGGGGGAGCCATCGGCAAG
GGCCCGGGCGTTGTGTGCGGTGCTGGTGCGAGCGACGCCTGCTCTGACCG
TCGCCGTCAGCCAGACCTTGGCTGATCTGAAGGCAACGGTGGGAGAGGTA
GCAACCGCCGCCGCTGCTTCCTCTGTAGAGGAGGGGATGGTAAATGACGT
GGACACGACGAAGGAGGAGGTACAGGTGACGTTGCGGGCGCGGTTGTTGT
CTGTGTTGTTTGAATCGGCGGCGGAGAAGGCAAGGAAGACGCTATTGCCC
AAGGTGGTTCGGTCGCTGGATGCAACGTTGGAGGGAGCGAAAGAGGCAGC
GCCGGCTTCGGAGGGAGTGGTGCAGATTGCAAACACAATTGAAGCTTTGG
GGGAGAATTTGCAGCGGTTGGCTGTGGAGAGTAGTTAGGATAGAGATGGG
AAGAAGGAGGGAGAGACGGGCTTACTCAAAAAAATAAAGTATCACTAATG
TTACTGGTGGATTGCGCACGAGAAGGTAAAAAGAGCATAAGGACAAAGGA
CTGAATGTATATGGCACAGGGTGACATATACTTGCGGCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCCCTCTCTCTC
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Coding sequence (CDS) from alignment at scaffold_16:421420..422931-

>mRNA_7159 ID=mRNA_7159|Name=jgi.p|Nanoce1779_2|595819|organism=Nannochloropsis oceanica|type=CDS|length=1283bp|location=Sequence derived from alignment at scaffold_16:421420..422931- (Nannochloropsis oceanica)
ATGAGGGTGGAGGGCGTGGGGGAGGAAGGACGGGCAGTGCTCGTGGGGGG
GCTCGAGGTGTGGCTTCGATGGCAGTTGCATGTCTTTGGCCAAGCGGCGT
TGGCAGCGGCGGAAGCCACAGGGGTACCTCTTCTGTTACCCAAGGCCATG
CTGTCGTCGCTGGCGTGGGTCGAGGAGACCTTGCTCCCGACTGCGTTGCA
GATGGACTCGCCCTCCCTCCCTTTTTCGTCCTCGTCTGACTTCGAGCAGG
TAGGGCCGCTTTCCCCTCCTGTCAGGCGCCCACGCACCACCACCACCATC
ACCACCACAAGCAGCAGCAGCAACCGCAACGAGCAGGAGAAGGAGGCAAA
GACGACGTTTGCACTGGAGCTCTTCGCGGCCAGCATGATGGTGGTGAGTG
ATTGGATCGTTGTGCTACCTGATGCAGCTGTCGAGGTGACGAAAAAGGCT
CAGCTCTGGTCAACCCATTTCTTCCTGCCGGGCCTGGCCGAGGAAAGGGG
TGATAACGAGGGTGAAGACGAGGCCAAGAACCGCCGATGTGCGACCTTGA
CCCTCCTTCCTCAGCTTTGTCGTCTTGCGTACCAACTCGGGTTGCAAGAG
ACGCGGCAGCAGCAGCAGGGATCGCAGCAGCAGCAGGAGGAAGAAGGGAG
GATTGCGCTTCCTCCCTCTTTGGTGGAAGTGCTTGTGAGAGCGGTTGATT
TTAAGGGGGAGGAAATGCCTTGGCATCGTTATCAGGACACGCATGTTGAT
TCCTACCGGTGTCTAGCGGGGCTGTTGGGACTGTACGGACGAGTGAGAAG
CACGAGGCCGGCGTTGACGTCGTTGGTGAATCGACTGACGAGTTTGTGTG
TCCAGGAATTGGAGGAGGGCAGGAAGGAGGAGGGGGAGCCATCGGCAAGG
GCCCGGGCGTTGTGTGCGGTGCTGGTGCGAGCGACGCCTGCTCTGACCGT
CGCCGTCAGCCAGACCTTGGCTGATCTGAAGGCAACGGTGGGAGAGGTAG
CAACCGCCGCCGCTGCTTCCTCTGTAGAGGAGGGGATGGTAAATGACGTG
GACACGACGAAGGAGGAGGTACAGGTGACGTTGCGGGCGCGGTTGTTGTC
TGTGTTGTTTGAATCGGCGGCGGAGAAGGCAAGGAAGACGCTATTGCCCA
AGGTGGTTCGGTCGCTGGATGCAACGTTGGAGGGAGCGAAAGAGGCAGCG
CCGGCTTCGGAGGGAGTGGTGCAGATTGCAAACACAATTGAAGCTTTGGG
GGAGAATTTGCAGCGGTTGGCTGTGGAGAGTAG
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Synonyms
Publications