jgi.p|Nanoce1779_2|531819, mRNA_7698 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|531819
Unique NamemRNA_7698
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length402
Alignment locationscaffold_21:112351..112752 +

Link to JBrowse

Properties
Property NameValue
TranscriptId531905
TrackFilteredModels2
ProteinId531819
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:112351..112752 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|531819gene_7698Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|531819mRNA_7698-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7698CDS_7698Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7698 ID=mRNA_7698|Name=jgi.p|Nanoce1779_2|531819|organism=Nannochloropsis oceanica|type=mRNA|length=402bp
ATGCGTGTCGTTTTACAACGCGCCGAGGAGCTGCAGCCGGGGGAAGCCCC
GTGGGTGCCACAGTGGGATACCTTCTCAACGCTGATGAGTGCGTGTCGGA
GGAGGAGAGAACTGGATTTACTAATGCGAGTCTTTAAGGCCTCGTTGCCC
TACCAAGGGTTCAGTAAGGTGGTCTTGTTGAACATTCTATTGGCGGGTCT
GTGTGACCATAATAAGCATATGGATGTGGCGGCGTATTATTTAGAGACAG
CGGAAGTTAAGTGGGGGGTGAGGCCTAATGAGGTGAGCTGGAACACACTC
TTGGGTGCCGCGGCACGAGGGGGGCAGCACCGCTTGTTTGAGGAGATGGA
ACGACAGATGAAGAAGCAGGGTGTGGAGGGGGACGTAACGACGCGGAACA
TC
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protein sequence of jgi.p|Nanoce1779_2|531819

>mRNA_7698-protein ID=mRNA_7698-protein|Name=jgi.p|Nanoce1779_2|531819|organism=Nannochloropsis oceanica|type=polypeptide|length=134bp
MRVVLQRAEELQPGEAPWVPQWDTFSTLMSACRRRRELDLLMRVFKASLP
YQGFSKVVLLNILLAGLCDHNKHMDVAAYYLETAEVKWGVRPNEVSWNTL
LGAAARGGQHRLFEEMERQMKKQGVEGDVTTRNI
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mRNA from alignment at scaffold_21:112351..112752+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7698 ID=mRNA_7698|Name=jgi.p|Nanoce1779_2|531819|organism=Nannochloropsis oceanica|type=mRNA|length=402bp|location=Sequence derived from alignment at scaffold_21:112351..112752+ (Nannochloropsis oceanica)
ATGCGTGTCGTTTTACAACGCGCCGAGGAGCTGCAGCCGGGGGAAGCCCC
GTGGGTGCCACAGTGGGATACCTTCTCAACGCTGATGAGTGCGTGTCGGA
GGAGGAGAGAACTGGATTTACTAATGCGAGTCTTTAAGGCCTCGTTGCCC
TACCAAGGGTTCAGTAAGGTGGTCTTGTTGAACATTCTATTGGCGGGTCT
GTGTGACCATAATAAGCATATGGATGTGGCGGCGTATTATTTAGAGACAG
CGGAAGTTAAGTGGGGGGTGAGGCCTAATGAGGTGAGCTGGAACACACTC
TTGGGTGCCGCGGCACGAGGGGGGCAGCACCGCTTGTTTGAGGAGATGGA
ACGACAGATGAAGAAGCAGGGTGTGGAGGGGGACGTAACGACGCGGAACA
TC
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Coding sequence (CDS) from alignment at scaffold_21:112351..112752+

>mRNA_7698 ID=mRNA_7698|Name=jgi.p|Nanoce1779_2|531819|organism=Nannochloropsis oceanica|type=CDS|length=402bp|location=Sequence derived from alignment at scaffold_21:112351..112752+ (Nannochloropsis oceanica)
ATGCGTGTCGTTTTACAACGCGCCGAGGAGCTGCAGCCGGGGGAAGCCCC
GTGGGTGCCACAGTGGGATACCTTCTCAACGCTGATGAGTGCGTGTCGGA
GGAGGAGAGAACTGGATTTACTAATGCGAGTCTTTAAGGCCTCGTTGCCC
TACCAAGGGTTCAGTAAGGTGGTCTTGTTGAACATTCTATTGGCGGGTCT
GTGTGACCATAATAAGCATATGGATGTGGCGGCGTATTATTTAGAGACAG
CGGAAGTTAAGTGGGGGGTGAGGCCTAATGAGGTGAGCTGGAACACACTC
TTGGGTGCCGCGGCACGAGGGGGGCAGCACCGCTTGTTTGAGGAGATGGA
ACGACAGATGAAGAAGCAGGGTGTGGAGGGGGACGTAACGACGCGGAACA
TC
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Synonyms
Publications