jgi.p|Nanoce1779_2|655295, mRNA_8247 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|655295
Unique Name	mRNA_8247
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1388
Alignment location	scaffold_23:177963..179350 +

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Properties


Property Name	Value
TranscriptId	655381
Track	FilteredModels2
ProteinId	655295

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_23	supercontig	scaffold_23:177963..179350 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|655295	gene_8247	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|655295	mRNA_8247-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8247	CDS_8247	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_23:177963..179350+
coding sequence from alignment at scaffold_23:177963..179350+

mRNA sequence

>mRNA_8247 ID=mRNA_8247|Name=jgi.p|Nanoce1779_2|655295|organism=Nannochloropsis oceanica|type=mRNA|length=1388bp
GGGGAGTTAAGGGGGGAGGGAGGGCGGGGGAGGTAAATACGCGGTTAACC
ATGAGTCAAGAACCGGAGTCGCAGGGATTGTTTTCGTAGATTGGGGAGGT
AGAGGGGGAGGGTGGGAGGCAAGAGGGGAGAAAAAGCGAGAGAGGAGGGG
TTTCTCATACTTTATCTCTTACTGAAGACGAGAGGTGTGTTTATTTGCTT
GGCTTAATAGCTTGCAATCAACAGCCGAAGCATGAGTAGCAGCAGCAGTA
CCACCACTACCATCAGCAGCAGCAGGACTAGCAGCAGCAGCATCAGCAAT
AAGTCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAATAGATCTAGC
AGCTGTAGCAGCTACAACGAGGACGGCATCCGTGGCAGCAATAGCAGCGA
ATGCAGCAAACACACCAGAACGAGACGGCCAAAACAGCAGCACCAGCGGC
AGCAGCAGCTGCAGCTGCAGCAGTACCAGCAGTACCAGCAGTAGTAGCAG
CTGCAGCAGAAGCCGTAGCAGTATCAGTAGCCGCAGCAGTAGCAGCCACC
ATCACTTACCGCACAGCTCCACTTTCCCCTTTTCGCTTTCTCGCTCACAG
AGAAAAGAGAGGGGGTAAGGGGGGGGACGGGAAAGAAGAAAATAAAGAGC
GACAGGGAGAGGGAGAGAGAGATTCGCAACGTAGAAACAAAAGAAAACCT
TCCCCCTTCTCAACCAAGGCAGAGAGACCCGGTGCATTTCGTTTGTCTTC
CTGCCCCATAAAATTTTCCTTATCCGTGCCAGCTTCCTCGTGTTGCGTCC
ACGTCCTCCCTGCTCAACTCACTCTCTCTTTCTCACACACACACGCACAC
ACACACACAAGCACACTCCCTCTTCCTCCCAATCCTTTACTGCTGTTGGC
ATTCCCTCTTCCACCTGTTATCAAAATGAATGCTTCCCAACGACCACAAC
ATCGACAACTCCCAACCCCCCCTCGAGCATATCCCACATTTCTTCTTCCC
CTCTTTTACCTCCACTCCGCATTTGCCCGCGGGAAACTGCCCGTCTTTAC
CGTCCTCCTCCCTCGAGGGCCCCCTACTCGTCTGACCAAAACATTCACCA
TCCACCCTCTCTATGTATAACCCCCCCCCCACCCCCCCTTTCCATCTTAC
AATACCATCCTCCCACCCTCCAGATTAAATCTATTTTCCCACATCTTCAT
CTCCTTTTTCTCCTGCCCTCCCTCATTTCCTCCCTCCCCCAGCTCACTTC
TTCTCCTCCCTCCACAGGCTCTTGAAGCTCTCCGTCAAACCCGGCCCTTC
CAAATTCATCTTCGTCAGGCCTAAAATCGTAACGCCCGTCACAGCCATCA
AGGCATAACGTGCCGCTGCCCTGGAAGCCTTGGGCACA

protein sequence of jgi.p|Nanoce1779_2|655295

>mRNA_8247-protein ID=mRNA_8247-protein|Name=jgi.p|Nanoce1779_2|655295|organism=Nannochloropsis oceanica|type=polypeptide|length=240bp
MQQTHQNETAKTAAPAAAAAAAAAVPAVPAVVAAAAEAVAVSVAAAVAAT
ITYRTAPLSPFRFLAHREKRGGKGGDGKEENKERQGEGERDSQRRNKRKP
SPFSTKAERPGAFRLSSCPIKFSLSVPASSCCVHVLPAQLTLSFSHTHAH
THTSTLPLPPNPLLLLAFPLPPVIKMNASQRPQHRQLPTPPRAYPTFLLP
LFYLHSAFARGKLPVFTVLLPRGPPTRLTKTFTIHPLYV*

mRNA from alignment at scaffold_23:177963..179350+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8247 ID=mRNA_8247|Name=jgi.p|Nanoce1779_2|655295|organism=Nannochloropsis oceanica|type=mRNA|length=1388bp|location=Sequence derived from alignment at scaffold_23:177963..179350+ (Nannochloropsis oceanica)
GGGGAGTTAAGGGGGGAGGGAGGGCGGGGGAGGTAAATACGCGGTTAACC
ATGAGTCAAGAACCGGAGTCGCAGGGATTGTTTTCGTAGATTGGGGAGGT
AGAGGGGGAGGGTGGGAGGCAAGAGGGGAGAAAAAGCGAGAGAGGAGGGG
TTTCTCATACTTTATCTCTTACTGAAGACGAGAGGTGTGTTTATTTGCTT
GGCTTAATAGCTTGCAATCAACAGCCGAAGCATGAGTAGCAGCAGCAGTA
CCACCACTACCATCAGCAGCAGCAGGACTAGCAGCAGCAGCATCAGCAAT
AAGTCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAATAGATCTAGC
AGCTGTAGCAGCTACAACGAGGACGGCATCCGTGGCAGCAATAGCAGCGA
ATGCAGCAAACACACCAGAACGAGACGGCCAAAACAGCAGCACCAGCGGC
AGCAGCAGCTGCAGCTGCAGCAGTACCAGCAGTACCAGCAGTAGTAGCAG
CTGCAGCAGAAGCCGTAGCAGTATCAGTAGCCGCAGCAGTAGCAGCCACC
ATCACTTACCGCACAGCTCCACTTTCCCCTTTTCGCTTTCTCGCTCACAG
AGAAAAGAGAGGGGGTAAGGGGGGGGACGGGAAAGAAGAAAATAAAGAGC
GACAGGGAGAGGGAGAGAGAGATTCGCAACGTAGAAACAAAAGAAAACCT
TCCCCCTTCTCAACCAAGGCAGAGAGACCCGGTGCATTTCGTTTGTCTTC
CTGCCCCATAAAATTTTCCTTATCCGTGCCAGCTTCCTCGTGTTGCGTCC
ACGTCCTCCCTGCTCAACTCACTCTCTCTTTCTCACACACACACGCACAC
ACACACACAAGCACACTCCCTCTTCCTCCCAATCCTTTACTGCTGTTGGC
ATTCCCTCTTCCACCTGTTATCAAAATGAATGCTTCCCAACGACCACAAC
ATCGACAACTCCCAACCCCCCCTCGAGCATATCCCACATTTCTTCTTCCC
CTCTTTTACCTCCACTCCGCATTTGCCCGCGGGAAACTGCCCGTCTTTAC
CGTCCTCCTCCCTCGAGGGCCCCCTACTCGTCTGACCAAAACATTCACCA
TCCACCCTCTCTATGTATAACCCCCCCCCCACCCCCCCTTTCCATCTTAC
AATACCATCCTCCCACCCTCCAGATTAAATCTATTTTCCCACATCTTCAT
CTCCTTTTTCTCCTGCCCTCCCTCATTTCCTCCCTCCCCCAGCTCACTTC
TTCTCCTCCCTCCACAGGCTCTTGAAGCTCTCCGTCAAACCCGGCCCTTC
CAAATTCATCTTCGTCAGGCCTAAAATCGTAACGCCCGTCACAGCCATCA
AGGCATAACGTGCCGCTGCCCTGGAAGCCTTGGGCACA

Coding sequence (CDS) from alignment at scaffold_23:177963..179350+

>mRNA_8247 ID=mRNA_8247|Name=jgi.p|Nanoce1779_2|655295|organism=Nannochloropsis oceanica|type=CDS|length=720bp|location=Sequence derived from alignment at scaffold_23:177963..179350+ (Nannochloropsis oceanica)
ATGCAGCAAACACACCAGAACGAGACGGCCAAAACAGCAGCACCAGCGGC
AGCAGCAGCTGCAGCTGCAGCAGTACCAGCAGTACCAGCAGTAGTAGCAG
CTGCAGCAGAAGCCGTAGCAGTATCAGTAGCCGCAGCAGTAGCAGCCACC
ATCACTTACCGCACAGCTCCACTTTCCCCTTTTCGCTTTCTCGCTCACAG
AGAAAAGAGAGGGGGTAAGGGGGGGGACGGGAAAGAAGAAAATAAAGAGC
GACAGGGAGAGGGAGAGAGAGATTCGCAACGTAGAAACAAAAGAAAACCT
TCCCCCTTCTCAACCAAGGCAGAGAGACCCGGTGCATTTCGTTTGTCTTC
CTGCCCCATAAAATTTTCCTTATCCGTGCCAGCTTCCTCGTGTTGCGTCC
ACGTCCTCCCTGCTCAACTCACTCTCTCTTTCTCACACACACACGCACAC
ACACACACAAGCACACTCCCTCTTCCTCCCAATCCTTTACTGCTGTTGGC
ATTCCCTCTTCCACCTGTTATCAAAATGAATGCTTCCCAACGACCACAAC
ATCGACAACTCCCAACCCCCCCTCGAGCATATCCCACATTTCTTCTTCCC
CTCTTTTACCTCCACTCCGCATTTGCCCGCGGGAAACTGCCCGTCTTTAC
CGTCCTCCTCCCTCGAGGGCCCCCTACTCGTCTGACCAAAACATTCACCA
TCCACCCTCTCTATGTATAA

Synonyms

Publications