|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 641967 |
| Track | FilteredModels2 |
| ProteinId | 641881 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_25 | supercontig | scaffold_25:312516..315805 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_8167 ID=mRNA_8167|Name=jgi.p|Nanoce1779_2|641881|organism=Nannochloropsis oceanica|type=mRNA|length=1905bp
ATGACTGTGGACTTGGGCGCAGGTCTCAACGATGCGGAGTTCCATGCCGC
CAAGATGGAGAGCAATTCACGGCCATCGACGGGTGGAGATAGGAGGATAA
AAAGGAGGTTTCGAGCCACGGCCACCACCACCCCTTCCCCCCCGCCAACC
TCCATCCTCCCTTACCCCAAGCTGGGTGACGTCGTTCTCGTGCCAGGGAA
ATGGGCCGGTGATTTCAGCATAGGTCAAATCCGCTTCCTTCAAAAAACCA
CGAATGGAAAGAAAGGAGAGGAGAAACGAGAGAGTTGGATCGCGGACGTC
GCCCCCTTCAAGGAGATTGGGGAGGACCTGTACCGAGCTGAGAAGGGAGG
GAGGGCAGGGACTTACCCTGTCGGTGATTTGAAACCTCTCTCTTACTTCT
TCATCGGTTCGTCGGACGCGTTCAAAGTGCCGCATAAATTGGTTGCGGTC
GAGGAGGGCGAGGGAGGGAGAGAGGGAGGGGTAGCCCAGGCCAAGAAAAA
AGTGCCTGTTCAGATGGCGCCTGCCTACACGACGGAGGGCTTCTCCATCC
TCCCGCCCAAGCTCGATCAAACAGTCATGGAGGCAAGCAGGGAGAAGTAC
GACGATTTGAAGAAGCGTATTCTGAGCGACACGGCGATCTTCGGCCTTGT
CGCGACTGGGCTGACGGGCGTGAATGCCGGTGTGAAGGACGCGGAGATAT
TTCTGGCTGGGGTGGTGGGGAGTTTGGCTTATCTTGTCTTGTTGACGCAG
AAGGCGGACGATATGGGGAGGGTGGGGGGGAAGGAGGGGGGGAAGGAGGG
GGGATTGATCAAGGGTCAGGGGGGGGGGTTGTTGCGGAGGAGTGTGGGGA
GCACGAGATTTCTGGTGCCGGTGATTCTGATTGCCGGCTTGGCCTACAAA
AACTTGTATGTGGGAGGAGAAGAAGCAGCAGCGGGTGTAGCAGCTTTGGG
GGCTGCAGCTAGTGGTGTCACTGCTGGTGCTGTTGGAGGAGGAGGAGGAG
GAGGGGCAAGACCTCTGTTCAATTACGTGCCACAAGATGAGTTTTGGGCG
GCCACGCTGGGTTTTTTGAGTTATCGGGTGCCGATGCTGGGGAGGGAGAT
AGGCGAGATTGTGACGAGGAGAAGCGAGAAGAGCAAGGAGGAGGCGAAGA
GCGTCGGAGGGTCTGTGAGGATGGGCTTGGCGTTGGTGGACCGGCTGAAG
GGAGGGGAGGAAGGGAGAGATGGGGGTGGGGTGGTGGAGGCGGAGGCGGC
AGGGGGAGCATACAGGAATGAAGTGACTGTTCTGGTGGTGAGTGGGCCGG
AGGGAATGAACAAAAGGGCATTGGCCAAGAAGCTGGTGGAGGAGGACCCG
TTGGAGAGGTACAAAGAGCCCGTGTGGGTGACAACGAGGACGCCGAGGGA
GGGGGAGAGGGATGGGATCGACTACCACTTTGTGGAAGATTTCGCGTTTC
AGGTTATGAGGGAACGGGGAAATTTCTTGGTGGCGTATAAGAAGGAGGGA
GGGAAGGAGGCCGGGGGGGAGGGGGGGTGGTATGGGTTAAGGCCTAGCGA
CCTAGAAGACGTGACAAGGAAGGAGGGGAAGGTGTCAGTGCTTGCCTTAA
ATGCATACATGGCTGATAAATTACTGGCGTTGAATAATGCGCGAATCATC
GCAACGTGGGTGACCTTGAATACAGTCGAACAATTGCGGGAACGGTATAT
GAAGAGAAAGAAGGAGGGCGGGGAGGGAGCGATGGAGGAGGAGGTGGAGG
CAGCGGTATCGAGAGCAACGGCAGCAATAGAGCATGCATTGTTGGGCGAG
GCGGGACGGAGGGGGTTCTATGAACACACGATTTATGATGACAAGGGAGA
GGAGGAGACGTTGAAAAAATTGAGGGACTTTGCAGATTTTGCCTTGAGCT
TGTAG back to topprotein sequence of jgi.p|Nanoce1779_2|641881 >mRNA_8167-protein ID=mRNA_8167-protein|Name=jgi.p|Nanoce1779_2|641881|organism=Nannochloropsis oceanica|type=polypeptide|length=635bp
MTVDLGAGLNDAEFHAAKMESNSRPSTGGDRRIKRRFRATATTTPSPPPT
SILPYPKLGDVVLVPGKWAGDFSIGQIRFLQKTTNGKKGEEKRESWIADV
APFKEIGEDLYRAEKGGRAGTYPVGDLKPLSYFFIGSSDAFKVPHKLVAV
EEGEGGREGGVAQAKKKVPVQMAPAYTTEGFSILPPKLDQTVMEASREKY
DDLKKRILSDTAIFGLVATGLTGVNAGVKDAEIFLAGVVGSLAYLVLLTQ
KADDMGRVGGKEGGKEGGLIKGQGGGLLRRSVGSTRFLVPVILIAGLAYK
NLYVGGEEAAAGVAALGAAASGVTAGAVGGGGGGGARPLFNYVPQDEFWA
ATLGFLSYRVPMLGREIGEIVTRRSEKSKEEAKSVGGSVRMGLALVDRLK
GGEEGRDGGGVVEAEAAGGAYRNEVTVLVVSGPEGMNKRALAKKLVEEDP
LERYKEPVWVTTRTPREGERDGIDYHFVEDFAFQVMRERGNFLVAYKKEG
GKEAGGEGGWYGLRPSDLEDVTRKEGKVSVLALNAYMADKLLALNNARII
ATWVTLNTVEQLRERYMKRKKEGGEGAMEEEVEAAVSRATAAIEHALLGE
AGRRGFYEHTIYDDKGEEETLKKLRDFADFALSL* back to topmRNA from alignment at scaffold_25:312516..315805- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_8167 ID=mRNA_8167|Name=jgi.p|Nanoce1779_2|641881|organism=Nannochloropsis oceanica|type=mRNA|length=3290bp|location=Sequence derived from alignment at scaffold_25:312516..315805- (Nannochloropsis oceanica)
ATGACTGTGGACTTGGGCGCAGGTCTCAACGATGCGGAGTTCCATGCCGC
CAAGATGGAGAGCAATTCACGGCCATCGACGGGTGGAGATAGGAGGATAA
AAAGGAGGTTTCGAGCGTACAAAATGCGAGCCTCAGTATTGCTTAGATGA
GCAATGATACCACGATTCGATATATCCACATGCAGATGACCGGTGTCTCG
CCTATCATGGTAAGGCATTCTATATTTTCTAGAGTGGTGGTGCGGATGGG
GGGTTAAACAGAACGGCTAGCAAATTTTCGATATTTACTTCGATGGTACA
GGTTCTTCTTTTTGCTGGGGAGGAGCGGGAAGGAAAATGCGTGGACCTCA
TGCTTTCACAGTAGGAGGGGGGCTTACTTGGTTTGGTTTTGGCTGTCGAG
GCTAGCCGCCCACATGCTGACTCGATGCCAGATTTTTGCCTATGGCTTGA
TGAAAAACGTAGCTATTCTTAATCGCGACCAGAAAATGGTTGGAAACATC
CGCTATCACTGGATTGACCCTCGCAAAACGATCTCCGCACTGTGGCGGCA
TTGCGTCCTGTAGCGGCAGTCGCCCATTTGAAGGCGCTCACAACAAACAC
CATCTCACTCATTTTTTTTATTTTCCTCGCCTCGTCCCTCATTTGCTTCC
TTGCTTATGCAATTTTGGAGAGATAGACACTTCCAATTAGCCAGATGTAC
AGACAGACTGCTCTTATATCTCACTGCACACAACCTACATGCCATAGGTG
AAGCGGAGCGCAGGATTGGAGCAGGACGTAGCTGTCTTCTTCCTGCGTGC
CAGCATCAACATCATCGCTAGCCGCCTCAACAACACACGGGACCCCTCCA
CACGTACATACCACACAATGCGGTGCTCTCTCCTTTCCTCGGCCTGGGCC
GCGCTGTTCTATACGTCTTCGACTTCTGCCGTGGCTGGATTCGTGTGTGT
CCTTCCCCAAGGTAGCATCACGTCCCTACGGAGAAGCGCTGCTCCGGCCG
CCACTGCTGCACCTGTCACTGCTAGCATCGCGCCAGGTCCAGCCTTCCCT
CATAGCGCGCGGTTGGCACGAAGGAGATTAGCGGCAACAACGAGGCTTTT
TATGTCTACCTCCCCATCGACGGATAGGTATATGCTTATTTGGCTTACTG
GGAGGTCGAGACTTTCCGCTCTCTCCTTCGCTTCCTCCTTCCTTCCCCTC
CTGCTCACCATACCCACTGGCTCATACATTCCAGAGAGCAAAGATGAAAA
ATCCTTCATCAGGCTTGAATTTCAGAGCATCCCTCCGTCCCTAGATATCC
CCTCGTCTTCTACCCTTCCTCCCTCCTCCTTGTCCACTCACACAGCACCA
CACCATCGCGAGCACTTGTACTCCTTCGTTCCCCCCCTTCCCTCCCTCCT
CTCCTAACCCAGAAAGTTTGCAATCCCTTTCATGCAATCATAAAGACAAG
CTAGCACACCCTCCCTACCTTCCTCCCTCCCTCCCTCCCACTCTTCCACA
GCACGGCCACCACCACCCCTTCCCCCCCGCCAACCTCCATCCTCCCTTAC
CCCAAGCTGGGTGACGTCGTTCTCGTGCCAGGGAAATGGGCCGGTGATTT
CAGCATAGGTCAAATCCGCTTCCTTCAAAAAACCACGAATGGAAAGAAAG
GAGAGGAGAAACGAGAGAGTTGGATCGCGGACGTCGCCCCCTTCAAGGAG
ATTGGGGAGGACCTGTACCGAGCTGAGAAGGGAGGGAGGGCAGGGACTTA
CCCTGTCGGTGATTTGAAACCTCTCTCTTACTTCTTCATCGGTTCGTCGG
ACGCGTTCAAAGTGCCGCATAAATTGGTTGCGGTCGAGGAGGGCGAGGGA
GGGAGAGAGGGAGGGGTAGCCCAGGCCAAGAAAAAAGTGCCTGTTCAGAT
GGCGCCTGCCTACACGACGGAGGGCTTCTCCATCCTCCCGCCCAAGCTCG
ATCAAACAGTCATGGAGGCAAGCAGGGAGAAGTACGACGATTTGAAGAAG
CGTATTCTGAGCGACACGGCGATCTTCGGCCTTGTCGCGACTGGGCTGAC
GGGCGTGAATGCCGGTGTGAAGGACGCGGAGATATTTCTGGCTGGGGTGG
TGGGGAGTTTGGCTTATCTTGTCTTGTTGACGCAGAAGGCGGACGATATG
GGGAGGGTGGGGGGGAAGGAGGGGGGGAAGGAGGGGGGATTGATCAAGGG
TCAGGGGGGGGGGTTGTTGCGGAGGAGTGTGGGGAGCACGAGATTTCTGG
TGCCGGTGATTCTGATTGCCGGCTTGGCCTACAAAAACTTGTATGTGGGA
GGAGAAGAAGCAGCAGCGGGTGTAGCAGCTTTGGGGGCTGCAGCTAGTGG
TGTCACTGCTGGTGCTGTTGGAGGAGGAGGAGGAGGAGGGGCAAGACCTC
TGTTCAATTACGTGCCACAAGATGAGTTTTGGGCGGCCACGCTGGGTTTT
TTGAGTTATCGGGTGCCGATGCTGGGGAGGGAGATAGGCGAGATTGTGAC
GAGGAGAAGCGAGAAGAGCAAGGAGGAGGCGAAGAGCGTCGGAGGGTCTG
TGAGGATGGGCTTGGCGTTGGTGGACCGGCTGAAGGGAGGGGAGGAAGGG
AGAGATGGGGGTGGGGTGGTGGAGGCGGAGGCGGCAGGGGGAGCATACAG
GAATGAAGTGACTGTTCTGGTGGTGAGTGGGCCGGAGGGAATGAACAAAA
GGGCATTGGCCAAGAAGCTGGTGGAGGAGGACCCGTTGGAGAGGTACAAA
GAGCCCGTGTGGGTGACAACGAGGACGCCGAGGGAGGGGGAGAGGGATGG
GATCGACTACCACTTTGTGGAAGATTTCGCGTTTCAGGTTATGAGGGAAC
GGGGAAATTTCTTGGTGGCGTATAAGAAGGAGGGAGGGAAGGAGGCCGGG
GGGGAGGGGGGGTGGTATGGGTTAAGGCCTAGCGACCTAGAAGACGTGAC
AAGGAAGGAGGGGAAGGTGTCAGTGCTTGCCTTAAATGCATACATGGCTG
ATAAATTACTGGCGTTGAATAATGCGCGAATCATCGCAACGTGGGTGACC
TTGAATACAGTCGAACAATTGCGGGAACGGTATATGAAGAGAAAGAAGGA
GGGCGGGGAGGGAGCGATGGAGGAGGAGGTGGAGGCAGCGGTATCGAGAG
CAACGGCAGCAATAGAGCATGCATTGTTGGGCGAGGCGGGACGGAGGGGG
TTCTATGAACACACGATTTATGATGACAAGGGAGAGGAGGAGACGTTGAA
AAAATTGAGGGACTTTGCAGATTTTGCCTTGAGCTTGTAG back to topCoding sequence (CDS) from alignment at scaffold_25:312516..315805- >mRNA_8167 ID=mRNA_8167|Name=jgi.p|Nanoce1779_2|641881|organism=Nannochloropsis oceanica|type=CDS|length=3810bp|location=Sequence derived from alignment at scaffold_25:312516..315805- (Nannochloropsis oceanica)
CACGGCCACCACCACCCCTTCCCCCCCGCCAACCTCCATCCTCCCTTACC
CCAAGCTGGGTGACGTCGTTCTCGTGCCAGGGAAATGGGCCGGTGATTTC
AGCATAGGTCAAATCCGCTTCCTTCAAAAAACCACGAATGGAAAGAAAGG
AGAGGAGAAACGAGAGAGTTGGATCGCGGACGTCGCCCCCTTCAAGGAGA
TTGGGGAGGACCTGTACCGAGCTGAGAAGGGAGGGAGGGCAGGGACTTAC
CCTGTCGGTGATTTGAAACCTCTCTCTTACTTCTTCATCGGTTCGTCGGA
CGCGTTCAAAGTGCCGCATAAATTGGTTGCGGTCGAGGAGGGCGAGGGAG
GGAGAGAGGGAGGGGTAGCCCAGGCCAAGAAAAAAGTGCCTGTTCAGATG
GCGCCTGCCTACACGACGGAGGGCTTCTCCATCCTCCCGCCCAAGCTCGA
TCAAACAGTCATGGAGGCAAGCAGGGAGAAGTACGACGATTTGAAGAAGC
GTATTCTGAGCGACACGGCGATCTTCGGCCTTGTCGCGACTGGGCTGACG
GGCGTGAATGCCGGTGTGAAGGACGCGGAGATATTTCTGGCTGGGGTGGT
GGGGAGTTTGGCTTATCTTGTCTTGTTGACGCAGAAGGCGGACGATATGG
GGAGGGTGGGGGGGAAGGAGGGGGGGAAGGAGGGGGGATTGATCAAGGGT
CAGGGGGGGGGGTTGTTGCGGAGGAGTGTGGGGAGCACGAGATTTCTGGT
GCCGGTGATTCTGATTGCCGGCTTGGCCTACAAAAACTTGTATGTGGGAG
GAGAAGAAGCAGCAGCGGGTGTAGCAGCTTTGGGGGCTGCAGCTAGTGGT
GTCACTGCTGGTGCTGTTGGAGGAGGAGGAGGAGGAGGGGCAAGACCTCT
GTTCAATTACGTGCCACAAGATGAGTTTTGGGCGGCCACGCTGGGTTTTT
TGAGTTATCGGGTGCCGATGCTGGGGAGGGAGATAGGCGAGATTGTGACG
AGGAGAAGCGAGAAGAGCAAGGAGGAGGCGAAGAGCGTCGGAGGGTCTGT
GAGGATGGGCTTGGCGTTGGTGGACCGGCTGAAGGGAGGGGAGGAAGGGA
GAGATGGGGGTGGGGTGGTGGAGGCGGAGGCGGCAGGGGGAGCATACAGG
AATGAAGTGACTGTTCTGGTGGTGAGTGGGCCGGAGGGAATGAACAAAAG
GGCATTGGCCAAGAAGCTGGTGGAGGAGGACCCGTTGGAGAGGTACAAAG
AGCCCGTGTGGGTGACAACGAGGACGCCGAGGGAGGGGGAGAGGGATGGG
ATCGACTACCACTTTGTGGAAGATTTCGCGTTTCAGGTTATGAGGGAACG
GGGAAATTTCTTGGTGGCGTATAAGAAGGAGGGAGGGAAGGAGGCCGGGG
GGGAGGGGGGGTGGTATGGGTTAAGGCCTAGCGACCTAGAAGACGTGACA
AGGAAGGAGGGGAAGGTGTCAGTGCTTGCCTTAAATGCATACATGGCTGA
TAAATTACTGGCGTTGAATAATGCGCGAATCATCGCAACGTGGGTGACCT
TGAATACAGTCGAACAATTGCGGGAACGGTATATGAAGAGAAAGAAGGAG
GGCGGGGAGGGAGCGATGGAGGAGGAGGTGGAGGCAGCGGTATCGAGAGC
AACGGCAGCAATAGAGCATGCATTGTTGGGCGAGGCGGGACGGAGGGGGT
TCTATGAACACACGATTTATGATGACAAGGGAGAGGAGGAGACGTTGAAA
AAATTGAGGGACTTTGCAGATTTTGCCTTGAGCTTGTAGATGACTGTGGA
CTTGGGCGCAGGTCTCAACGATGCGGAGTTCCATGCCGCCAAGATGGAGA
GCAATTCACGGCCATCGACGGGTGGAGATAGGAGGATAAAAAGGAGGTTT
CGAGCCACGGCCACCACCACCCCTTCCCCCCCGCCAACCTCCATCCTCCC
TTACCCCAAGCTGGGTGACGTCGTTCTCGTGCCAGGGAAATGGGCCGGTG
ATTTCAGCATAGGTCAAATCCGCTTCCTTCAAAAAACCACGAATGGAAAG
AAAGGAGAGGAGAAACGAGAGAGTTGGATCGCGGACGTCGCCCCCTTCAA
GGAGATTGGGGAGGACCTGTACCGAGCTGAGAAGGGAGGGAGGGCAGGGA
CTTACCCTGTCGGTGATTTGAAACCTCTCTCTTACTTCTTCATCGGTTCG
TCGGACGCGTTCAAAGTGCCGCATAAATTGGTTGCGGTCGAGGAGGGCGA
GGGAGGGAGAGAGGGAGGGGTAGCCCAGGCCAAGAAAAAAGTGCCTGTTC
AGATGGCGCCTGCCTACACGACGGAGGGCTTCTCCATCCTCCCGCCCAAG
CTCGATCAAACAGTCATGGAGGCAAGCAGGGAGAAGTACGACGATTTGAA
GAAGCGTATTCTGAGCGACACGGCGATCTTCGGCCTTGTCGCGACTGGGC
TGACGGGCGTGAATGCCGGTGTGAAGGACGCGGAGATATTTCTGGCTGGG
GTGGTGGGGAGTTTGGCTTATCTTGTCTTGTTGACGCAGAAGGCGGACGA
TATGGGGAGGGTGGGGGGGAAGGAGGGGGGGAAGGAGGGGGGATTGATCA
AGGGTCAGGGGGGGGGGTTGTTGCGGAGGAGTGTGGGGAGCACGAGATTT
CTGGTGCCGGTGATTCTGATTGCCGGCTTGGCCTACAAAAACTTGTATGT
GGGAGGAGAAGAAGCAGCAGCGGGTGTAGCAGCTTTGGGGGCTGCAGCTA
GTGGTGTCACTGCTGGTGCTGTTGGAGGAGGAGGAGGAGGAGGGGCAAGA
CCTCTGTTCAATTACGTGCCACAAGATGAGTTTTGGGCGGCCACGCTGGG
TTTTTTGAGTTATCGGGTGCCGATGCTGGGGAGGGAGATAGGCGAGATTG
TGACGAGGAGAAGCGAGAAGAGCAAGGAGGAGGCGAAGAGCGTCGGAGGG
TCTGTGAGGATGGGCTTGGCGTTGGTGGACCGGCTGAAGGGAGGGGAGGA
AGGGAGAGATGGGGGTGGGGTGGTGGAGGCGGAGGCGGCAGGGGGAGCAT
ACAGGAATGAAGTGACTGTTCTGGTGGTGAGTGGGCCGGAGGGAATGAAC
AAAAGGGCATTGGCCAAGAAGCTGGTGGAGGAGGACCCGTTGGAGAGGTA
CAAAGAGCCCGTGTGGGTGACAACGAGGACGCCGAGGGAGGGGGAGAGGG
ATGGGATCGACTACCACTTTGTGGAAGATTTCGCGTTTCAGGTTATGAGG
GAACGGGGAAATTTCTTGGTGGCGTATAAGAAGGAGGGAGGGAAGGAGGC
CGGGGGGGAGGGGGGGTGGTATGGGTTAAGGCCTAGCGACCTAGAAGACG
TGACAAGGAAGGAGGGGAAGGTGTCAGTGCTTGCCTTAAATGCATACATG
GCTGATAAATTACTGGCGTTGAATAATGCGCGAATCATCGCAACGTGGGT
GACCTTGAATACAGTCGAACAATTGCGGGAACGGTATATGAAGAGAAAGA
AGGAGGGCGGGGAGGGAGCGATGGAGGAGGAGGTGGAGGCAGCGGTATCG
AGAGCAACGGCAGCAATAGAGCATGCATTGTTGGGCGAGGCGGGACGGAG
GGGGTTCTATGAACACACGATTTATGATGACAAGGGAGAGGAGGAGACGT
TGAAAAAATTGAGGGACTTTGCAGATTTTGCCTTGAGCTTGTAGATGACT
GTGGACTTGGGCGCAGGTCTCAACGATGCGGAGTTCCATGCCGCCAAGAT
GGAGAGCAATTCACGGCCATCGACGGGTGGAGATAGGAGGATAAAAAGGA
GGTTTCGAGC back to top
|