jgi.p|Nanoce1779_2|673391, mRNA_8075 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|673391
Unique Name	mRNA_8075
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1609
Alignment location	scaffold_25:92587..94195 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	673477
Track	FilteredModels2
ProteinId	673391

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_25	supercontig	scaffold_25:92587..94195 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|673391	gene_8075	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|673391	mRNA_8075-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8075	CDS_8075	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_25:92587..94195+
coding sequence from alignment at scaffold_25:92587..94195+

mRNA sequence

>mRNA_8075 ID=mRNA_8075|Name=jgi.p|Nanoce1779_2|673391|organism=Nannochloropsis oceanica|type=mRNA|length=1609bp
CGTCGTCCTCCTGTAGCCTGCTCATATAAAAGTTAAGGAGGGAAGAGGAT
AAGCAAGGGCCAGGGCAGGGAGATTGGGATTACAAGTTTATACTCTGGTG
GTCTCATCGCGATGGCCCCAGCCGGACAAGGTCACTCACAGGCAAATGGG
ATAGCAGGATGATGATTTAAATTGCCCGGCTTTGACGAATAATGCTCGAC
TCCAGGCAATTGACGCCAGGGCAACCTCCCCACCATACCCACACACACCC
CAACCCACAACTCACACAACCCCACGGCCCACCCTACACAATGCCACCAG
GATCAGTAGTAAACGACTGGGGAAATACTTTGGTCTCTACGGAGACTGCG
GACTTGAAAATGCCATTTCGTCACGCCCTTTTTGTGCGGGGTGGCGCGTC
TCCTTCTCCCCAGCAAACCTCATCATCCCCTTCATCTGAGACACAACAAG
CCTTGCCGTCACAACCCTCACCGATACGGCCGGTCAAAACTGCCAAGCCT
ATCACTCAAGGACATTCCTCTATACTCATGACCGAGAAGACCACCTGCAG
CGTGCGCTCTCTCCGCTCCCAGCCCCTCTCCCTCCAAGCAGCGGCAGCAG
AGACTCCCTTGACAATAGCATTACCAGGAGGTGCCCAAGGCTTTCGCGCC
GCCCTTCTTGCCCGCAATTGGGTGGTCAAATCATCGGGAAAAGCTAGGAT
GGAAGAAGGGTTGTTTATTGCTTTATTGCTCGACCACAAACGCATCCCTT
TTACCATTGTGCAATCCATGCAGAAGAGATCGGGTTTTGACCCGAACTTG
CACGACTCCGTCTTGTTCTTCCACCGTCGAGGGAAGAAACTGGCGGGCAG
CTTCGGGGCTGTGATGAAGGAGAGCTGGTCTGTTTGGAATCGAGCGGCGT
ATGATTGCTACGCGGAGAAGGATCGAGGTGCCGCAGAGGCTTTCCAGCAT
TTCCTGGAGGACGAGGTGTTCGAGTGGTTGGAGTGTGAGGTCTGTAAGAG
GTGGAGGATGTATCCCGTGGATGACGTGGTGCTACCGAGTGAACACTCGT
TTTTTGTGTGTGACTTGGCGGGGAGTTGGAATCCGGCCATCAAGGGTTGT
GAGACTGAGCAGGAATACTCAACCGACAGTGTGAGTACTACCGCGAATAG
CATTGTTAGCCCCATTTCGGCTACTCCTGCTGCTGATAATGATGAAGAGT
CAGATAAGCGGACTGTTGCACGTGCTGTTACAGGTGTTGCTGATGCTGCA
CCCGCTGCACCCAAGGAAAAGGGTATGGAGGGGGAGGGGGAGGGAGGGGG
GGAGCTGCGTGGTGGTGATGCAGCATTGGTAGTGGCTGCGGTAACGAGGG
CGTTGGAGTTTACGCGTGGAGTGGAGAAAGATAAATACAACGAGGAAGGT
AGGGAGGGTTGCGGGGATGGGGGGAAAGAGAAAGCTGTATCGAGTATCGA
CGTGGATGAGCAGGTAGAGGAAGAAGGGAGGGGAGAGGAGGAGAAGGGGG
AGAGGGAGGGGTGAGAAGGAGGCAGTGAGATGGAAGAGCGCGCGAGGTGA
AGGATATGTACATTTGTAAATCTTCAAAGACAAAGTAAAACACGTGTACA
ACACAGAAG

protein sequence of jgi.p|Nanoce1779_2|673391

>mRNA_8075-protein ID=mRNA_8075-protein|Name=jgi.p|Nanoce1779_2|673391|organism=Nannochloropsis oceanica|type=polypeptide|length=441bp
MLDSRQLTPGQPPHHTHTHPNPQLTQPHGPPYTMPPGSVVNDWGNTLVST
ETADLKMPFRHALFVRGGASPSPQQTSSSPSSETQQALPSQPSPIRPVKT
AKPITQGHSSILMTEKTTCSVRSLRSQPLSLQAAAAETPLTIALPGGAQG
FRAALLARNWVVKSSGKARMEEGLFIALLLDHKRIPFTIVQSMQKRSGFD
PNLHDSVLFFHRRGKKLAGSFGAVMKESWSVWNRAAYDCYAEKDRGAAEA
FQHFLEDEVFEWLECEVCKRWRMYPVDDVVLPSEHSFFVCDLAGSWNPAI
KGCETEQEYSTDSVSTTANSIVSPISATPAADNDEESDKRTVARAVTGVA
DAAPAAPKEKGMEGEGEGGGELRGGDAALVVAAVTRALEFTRGVEKDKYN
EEGREGCGDGGKEKAVSSIDVDEQVEEEGRGEEEKGEREG*

mRNA from alignment at scaffold_25:92587..94195+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8075 ID=mRNA_8075|Name=jgi.p|Nanoce1779_2|673391|organism=Nannochloropsis oceanica|type=mRNA|length=1609bp|location=Sequence derived from alignment at scaffold_25:92587..94195+ (Nannochloropsis oceanica)
CGTCGTCCTCCTGTAGCCTGCTCATATAAAAGTTAAGGAGGGAAGAGGAT
AAGCAAGGGCCAGGGCAGGGAGATTGGGATTACAAGTTTATACTCTGGTG
GTCTCATCGCGATGGCCCCAGCCGGACAAGGTCACTCACAGGCAAATGGG
ATAGCAGGATGATGATTTAAATTGCCCGGCTTTGACGAATAATGCTCGAC
TCCAGGCAATTGACGCCAGGGCAACCTCCCCACCATACCCACACACACCC
CAACCCACAACTCACACAACCCCACGGCCCACCCTACACAATGCCACCAG
GATCAGTAGTAAACGACTGGGGAAATACTTTGGTCTCTACGGAGACTGCG
GACTTGAAAATGCCATTTCGTCACGCCCTTTTTGTGCGGGGTGGCGCGTC
TCCTTCTCCCCAGCAAACCTCATCATCCCCTTCATCTGAGACACAACAAG
CCTTGCCGTCACAACCCTCACCGATACGGCCGGTCAAAACTGCCAAGCCT
ATCACTCAAGGACATTCCTCTATACTCATGACCGAGAAGACCACCTGCAG
CGTGCGCTCTCTCCGCTCCCAGCCCCTCTCCCTCCAAGCAGCGGCAGCAG
AGACTCCCTTGACAATAGCATTACCAGGAGGTGCCCAAGGCTTTCGCGCC
GCCCTTCTTGCCCGCAATTGGGTGGTCAAATCATCGGGAAAAGCTAGGAT
GGAAGAAGGGTTGTTTATTGCTTTATTGCTCGACCACAAACGCATCCCTT
TTACCATTGTGCAATCCATGCAGAAGAGATCGGGTTTTGACCCGAACTTG
CACGACTCCGTCTTGTTCTTCCACCGTCGAGGGAAGAAACTGGCGGGCAG
CTTCGGGGCTGTGATGAAGGAGAGCTGGTCTGTTTGGAATCGAGCGGCGT
ATGATTGCTACGCGGAGAAGGATCGAGGTGCCGCAGAGGCTTTCCAGCAT
TTCCTGGAGGACGAGGTGTTCGAGTGGTTGGAGTGTGAGGTCTGTAAGAG
GTGGAGGATGTATCCCGTGGATGACGTGGTGCTACCGAGTGAACACTCGT
TTTTTGTGTGTGACTTGGCGGGGAGTTGGAATCCGGCCATCAAGGGTTGT
GAGACTGAGCAGGAATACTCAACCGACAGTGTGAGTACTACCGCGAATAG
CATTGTTAGCCCCATTTCGGCTACTCCTGCTGCTGATAATGATGAAGAGT
CAGATAAGCGGACTGTTGCACGTGCTGTTACAGGTGTTGCTGATGCTGCA
CCCGCTGCACCCAAGGAAAAGGGTATGGAGGGGGAGGGGGAGGGAGGGGG
GGAGCTGCGTGGTGGTGATGCAGCATTGGTAGTGGCTGCGGTAACGAGGG
CGTTGGAGTTTACGCGTGGAGTGGAGAAAGATAAATACAACGAGGAAGGT
AGGGAGGGTTGCGGGGATGGGGGGAAAGAGAAAGCTGTATCGAGTATCGA
CGTGGATGAGCAGGTAGAGGAAGAAGGGAGGGGAGAGGAGGAGAAGGGGG
AGAGGGAGGGGTGAGAAGGAGGCAGTGAGATGGAAGAGCGCGCGAGGTGA
AGGATATGTACATTTGTAAATCTTCAAAGACAAAGTAAAACACGTGTACA
ACACAGAAG

Coding sequence (CDS) from alignment at scaffold_25:92587..94195+

>mRNA_8075 ID=mRNA_8075|Name=jgi.p|Nanoce1779_2|673391|organism=Nannochloropsis oceanica|type=CDS|length=1323bp|location=Sequence derived from alignment at scaffold_25:92587..94195+ (Nannochloropsis oceanica)
ATGCTCGACTCCAGGCAATTGACGCCAGGGCAACCTCCCCACCATACCCA
CACACACCCCAACCCACAACTCACACAACCCCACGGCCCACCCTACACAA
TGCCACCAGGATCAGTAGTAAACGACTGGGGAAATACTTTGGTCTCTACG
GAGACTGCGGACTTGAAAATGCCATTTCGTCACGCCCTTTTTGTGCGGGG
TGGCGCGTCTCCTTCTCCCCAGCAAACCTCATCATCCCCTTCATCTGAGA
CACAACAAGCCTTGCCGTCACAACCCTCACCGATACGGCCGGTCAAAACT
GCCAAGCCTATCACTCAAGGACATTCCTCTATACTCATGACCGAGAAGAC
CACCTGCAGCGTGCGCTCTCTCCGCTCCCAGCCCCTCTCCCTCCAAGCAG
CGGCAGCAGAGACTCCCTTGACAATAGCATTACCAGGAGGTGCCCAAGGC
TTTCGCGCCGCCCTTCTTGCCCGCAATTGGGTGGTCAAATCATCGGGAAA
AGCTAGGATGGAAGAAGGGTTGTTTATTGCTTTATTGCTCGACCACAAAC
GCATCCCTTTTACCATTGTGCAATCCATGCAGAAGAGATCGGGTTTTGAC
CCGAACTTGCACGACTCCGTCTTGTTCTTCCACCGTCGAGGGAAGAAACT
GGCGGGCAGCTTCGGGGCTGTGATGAAGGAGAGCTGGTCTGTTTGGAATC
GAGCGGCGTATGATTGCTACGCGGAGAAGGATCGAGGTGCCGCAGAGGCT
TTCCAGCATTTCCTGGAGGACGAGGTGTTCGAGTGGTTGGAGTGTGAGGT
CTGTAAGAGGTGGAGGATGTATCCCGTGGATGACGTGGTGCTACCGAGTG
AACACTCGTTTTTTGTGTGTGACTTGGCGGGGAGTTGGAATCCGGCCATC
AAGGGTTGTGAGACTGAGCAGGAATACTCAACCGACAGTGTGAGTACTAC
CGCGAATAGCATTGTTAGCCCCATTTCGGCTACTCCTGCTGCTGATAATG
ATGAAGAGTCAGATAAGCGGACTGTTGCACGTGCTGTTACAGGTGTTGCT
GATGCTGCACCCGCTGCACCCAAGGAAAAGGGTATGGAGGGGGAGGGGGA
GGGAGGGGGGGAGCTGCGTGGTGGTGATGCAGCATTGGTAGTGGCTGCGG
TAACGAGGGCGTTGGAGTTTACGCGTGGAGTGGAGAAAGATAAATACAAC
GAGGAAGGTAGGGAGGGTTGCGGGGATGGGGGGAAAGAGAAAGCTGTATC
GAGTATCGACGTGGATGAGCAGGTAGAGGAAGAAGGGAGGGGAGAGGAGG
AGAAGGGGGAGAGGGAGGGGTGA

Synonyms

Publications