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Properties
| Property Name | Value |
|---|
| TranscriptId | 208547 |
| Track | FilteredModels2 |
| ProteinId | 208461 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_26 | supercontig | scaffold_26:195933..197573 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_8557 ID=mRNA_8557|Name=jgi.p|Nanoce1779_2|208461|organism=Nannochloropsis oceanica|type=mRNA|length=1502bp
AATGATGATCACCAAATAAATTATACCCGGTGCCAAGCCCTGCGATTCTG
GAATAGATACTTCACCTAAAGGAGTGCCTTTCTTGCAAAGATCCATGCCG
GTTTGCTGCTTCCGTCGGCAGTAATCCCCCATCACATTCACCATGTGCAC
CACCCCAAAGAATCCCGCGGCCGCAATGCCCAATTGCTCCAAGATATATT
TGCGAGCATTGGCTGGTTCTCGTCCAAATGCATCTGCGGGTAGATCAAGC
AAGAGCTTGAGGGGCAGAACCAAGAGCAAGAGCACGTAGAAAGCGTCCCA
CAGCTGGTAGGATGATGCTGCAGAGGGGAGGATGAATGGGGTGGTGGAGG
CCGAAGGGCTAGAAGAGGAAGGCATGTTGTTCCCATTCTTCGCTTTGCTA
CTGCGTAAGGCAGGCGCCATCCTGTCTTTGCTCGCGCATGGGATGGAGCG
TTGTTGGTGAGGCATTTGAATGAAGAAGGCATGCGATCAGCCTCTTCTTC
ATTCTCCTCAACCCCCAAAAGGCACCTGCCACCGTCCATGTTCCTATCCA
TGCATAAAACCACATCGGGTTTGGGTGGTACCATGACTCGAAAAAGAAGC
TCGTGGTTTGGGCGTACCAACACCTCTGCCTCGAGCCTCGTAGAGGAAAA
TGGATCAGGATGCGGAAAAAGAGTTCCCGAAAAGGAAGAAGTTTTGGGCC
TGGACATGACCCTGGGCACCATGGGGAAGACACGGATGGTCTTTACCGAC
GGCGGCTGGCAAGTCGACGACGCTCTTGTGCGAGAGTACGAGGAGAAACT
GCAGCAACTGACAGAGCAGCTTAGTGAAGTGCGGTGGGAGCAACAAGTAG
CTCGAGCATCCGAGACCGAGGCAGAGCAACGTCACCGGGCCGCGCAAGAA
ATTGCGGCTGCCTCTGCAGCGACTGTCGAGGAGGTGGCCACACTCAAATT
CAAGAACCAGCTCCTGATCGAGATGCTGGCGATTGCGCAGCTGGATGAGT
CGCATACATTGCAGAGCTATGATCAAGAGAGAATTAAGGCAGAGGAGTAC
CATCGGGAATTGGAGAGGTGTTATGCGCGGATGCTTAATCATGGCTTGGA
CCCAGGACTGACGACAAGCAGCGGTTGCAGCAGTAAGAAGAAAGGCAAGG
GCGAGGAAAGATACACGATTAGGGGGAAGTAGAAAAAGAAAGTTGTATAT
GACTTGGGCTCTCGTCTTCTTTTTCTACTTGTAATGGTCCATGAATACAG
AGCTCGGATTTGTTTGGCACATATACACATCACCAAGGAGGTGTGATTCT
CCCTCCTCCCTCCTACCCTCCCCTCTCATTCCATTTTCCTCAAGTATTTT
TTTTCTCTTTTCACCATCTTCGAAGAGACAGCACATTTACGTTTCACCCA
TTCTTGTGTGTTGCATGAAAATTCGTTTCAGTGGAAAAATATATGATTTT
CGTGTGAATCGTGTACTCTCAATATAACGCGAGGGCAGGGTCTCTTTTCC
TC back to topprotein sequence of jgi.p|Nanoce1779_2|208461 >mRNA_8557-protein ID=mRNA_8557-protein|Name=jgi.p|Nanoce1779_2|208461|organism=Nannochloropsis oceanica|type=polypeptide|length=234bp
MRSASSSFSSTPKRHLPPSMFLSMHKTTSGLGGTMTRKRSSWFGRTNTSA
SSLVEENGSGCGKRVPEKEEVLGLDMTLGTMGKTRMVFTDGGWQVDDALV
REYEEKLQQLTEQLSEVRWEQQVARASETEAEQRHRAAQEIAAASAATVE
EVATLKFKNQLLIEMLAIAQLDESHTLQSYDQERIKAEEYHRELERCYAR
MLNHGLDPGLTTSSGCSSKKKGKGEERYTIRGK* back to topmRNA from alignment at scaffold_26:195933..197573+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_8557 ID=mRNA_8557|Name=jgi.p|Nanoce1779_2|208461|organism=Nannochloropsis oceanica|type=mRNA|length=1641bp|location=Sequence derived from alignment at scaffold_26:195933..197573+ (Nannochloropsis oceanica)
AATGATGATCACCAAATAAATTATACCCGGTGCCAAGCCCTGCGATTCTG
GAATAGATACTTCACCTAAAGGAGTGCCTTTCTTGCAAAGATCCATGCCG
GTTTGCTGCTTCCGTCGGCAGTAATCCCCCATCACATTCACCATGTGCAC
CACCCCAAAGAATCCCGCGGCCGCAATGCCCAATTGCTCCAAGATATATT
TGCGAGCATTGGCTGGTTCTCGTCCAAATGCATCTGCGGGTAGATCAAGC
AAGAGCTTGAGGGGCAGAACCAAGAGCAAGAGCACGTAGAAAGCGTCCCA
CAGCTGGTAGGATGATGCTGCAGAGGGGAGGATGAATGGGGTGGTGGAGG
CCGAAGGGCTAGAAGAGGAAGGCATGTTGTTCCCATTCTTCGCTTTGCTA
CTGCGTAAGGCAGGCGCCATCCTGTCTTTGCTCGCGCATGGGATGGAGCG
TTGTTGGTGAGGCATTTGAATGAAGAAGGTGGGTGTGGCCGTTGCTTTTT
TTGTGCTTTTCCGTTGTTACGAGAGTGTTGTTCTTTGGCCCACATTTTCA
TTTGGTCCCTGGTTTTTGGCTACTTTCCTCCGTATCGAAGCTCAGACACA
TTTCACCTTACACACAGGCATGCGATCAGCCTCTTCTTCATTCTCCTCAA
CCCCCAAAAGGCACCTGCCACCGTCCATGTTCCTATCCATGCATAAAACC
ACATCGGGTTTGGGTGGTACCATGACTCGAAAAAGAAGCTCGTGGTTTGG
GCGTACCAACACCTCTGCCTCGAGCCTCGTAGAGGAAAATGGATCAGGAT
GCGGAAAAAGAGTTCCCGAAAAGGAAGAAGTTTTGGGCCTGGACATGACC
CTGGGCACCATGGGGAAGACACGGATGGTCTTTACCGACGGCGGCTGGCA
AGTCGACGACGCTCTTGTGCGAGAGTACGAGGAGAAACTGCAGCAACTGA
CAGAGCAGCTTAGTGAAGTGCGGTGGGAGCAACAAGTAGCTCGAGCATCC
GAGACCGAGGCAGAGCAACGTCACCGGGCCGCGCAAGAAATTGCGGCTGC
CTCTGCAGCGACTGTCGAGGAGGTGGCCACACTCAAATTCAAGAACCAGC
TCCTGATCGAGATGCTGGCGATTGCGCAGCTGGATGAGTCGCATACATTG
CAGAGCTATGATCAAGAGAGAATTAAGGCAGAGGAGTACCATCGGGAATT
GGAGAGGTGTTATGCGCGGATGCTTAATCATGGCTTGGACCCAGGACTGA
CGACAAGCAGCGGTTGCAGCAGTAAGAAGAAAGGCAAGGGCGAGGAAAGA
TACACGATTAGGGGGAAGTAGAAAAAGAAAGTTGTATATGACTTGGGCTC
TCGTCTTCTTTTTCTACTTGTAATGGTCCATGAATACAGAGCTCGGATTT
GTTTGGCACATATACACATCACCAAGGAGGTGTGATTCTCCCTCCTCCCT
CCTACCCTCCCCTCTCATTCCATTTTCCTCAAGTATTTTTTTTCTCTTTT
CACCATCTTCGAAGAGACAGCACATTTACGTTTCACCCATTCTTGTGTGT
TGCATGAAAATTCGTTTCAGTGGAAAAATATATGATTTTCGTGTGAATCG
TGTACTCTCAATATAACGCGAGGGCAGGGTCTCTTTTCCTC back to topCoding sequence (CDS) from alignment at scaffold_26:195933..197573+ >mRNA_8557 ID=mRNA_8557|Name=jgi.p|Nanoce1779_2|208461|organism=Nannochloropsis oceanica|type=CDS|length=702bp|location=Sequence derived from alignment at scaffold_26:195933..197573+ (Nannochloropsis oceanica)
ATGCGATCAGCCTCTTCTTCATTCTCCTCAACCCCCAAAAGGCACCTGCC
ACCGTCCATGTTCCTATCCATGCATAAAACCACATCGGGTTTGGGTGGTA
CCATGACTCGAAAAAGAAGCTCGTGGTTTGGGCGTACCAACACCTCTGCC
TCGAGCCTCGTAGAGGAAAATGGATCAGGATGCGGAAAAAGAGTTCCCGA
AAAGGAAGAAGTTTTGGGCCTGGACATGACCCTGGGCACCATGGGGAAGA
CACGGATGGTCTTTACCGACGGCGGCTGGCAAGTCGACGACGCTCTTGTG
CGAGAGTACGAGGAGAAACTGCAGCAACTGACAGAGCAGCTTAGTGAAGT
GCGGTGGGAGCAACAAGTAGCTCGAGCATCCGAGACCGAGGCAGAGCAAC
GTCACCGGGCCGCGCAAGAAATTGCGGCTGCCTCTGCAGCGACTGTCGAG
GAGGTGGCCACACTCAAATTCAAGAACCAGCTCCTGATCGAGATGCTGGC
GATTGCGCAGCTGGATGAGTCGCATACATTGCAGAGCTATGATCAAGAGA
GAATTAAGGCAGAGGAGTACCATCGGGAATTGGAGAGGTGTTATGCGCGG
ATGCTTAATCATGGCTTGGACCCAGGACTGACGACAAGCAGCGGTTGCAG
CAGTAAGAAGAAAGGCAAGGGCGAGGAAAGATACACGATTAGGGGGAAGT
AG back to top
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