jgi.p|Nanoce1779_2|208575, mRNA_8564 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|208575
Unique Name	mRNA_8564
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1655
Alignment location	scaffold_26:212816..214718 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	208661
Track	FilteredModels2
ProteinId	208575

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_26	supercontig	scaffold_26:212816..214718 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|208575	gene_8564	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|208575	mRNA_8564-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8564	CDS_8564	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_26:212816..214718+
coding sequence from alignment at scaffold_26:212816..214718+

mRNA sequence

>mRNA_8564 ID=mRNA_8564|Name=jgi.p|Nanoce1779_2|208575|organism=Nannochloropsis oceanica|type=mRNA|length=1655bp
GGTGGGTGGGGAGGGAGGGGAGGTCGACCAGCAACGGGTGCCCCCTAAAA
ATGCAATTTCACTTGCACGTCAAAGAATATGGATAGCACGATGATCAGTG
TGCTGTGCACTTGTCCTTGGGGTGCGAGGTGCTTGGGAGAAAAACGCGGG
CTCGTAAGATATCAAGGCATGCTTGTCTCTTTGGCCCACGAGGAGTCTCT
TCGCCACGCGTTAAGCGAAGGCAAGGAAAGCTAATCCCATGTCAACGCAC
TCGGCCACGCCCGGCGTTCACGTGCTCACAAAAAAATCCCGAGGCGTTTG
CGGTGCACGCCTCGGCCGCAGCTATAGGGGCGAGAAGCGCGGTGTGGTGC
GTGAATGTCCACTGATTTGAAACATTGGACAGACGGAGGAGCCCGATAAA
TGCATTCTGTGTCTTTTGCCATATCTCCTTACGTATGTGTCATGTGCCAC
GCACGGACTCCTTCCCCCTCCACCTCATTTGGACATAGCTATAGGGAGCA
GCGCCCACTCTTGGCGCAGCTGCACGTGGCGCGGAGCAAGCGCAATACAA
GTAGCCAATATCCTGTCATCTCGTTCTGCACCAGCCTCGTCGTCACTGCA
ACGATGGAGGAGCAACAAATCCCCCAACCCGCTCCACCAGCGGCAGCAGG
CGGTGCGGATGCGGCAGCACACACCCCTCCTAATCGGGTCAAGACCGGGG
GGACTGGTGGAGGAGGCGAGGAGGAGGGCACAGAGGCCATGATGGTCGTG
GATGGAGAGGAGATGGACCCCCCCTCCGCCGATTTCCAAGCGGAAGTCGC
CGCATTTCTGGCAGACCCCGCCACAGCGTCGAAGCCTGACCCGCCTGATC
TCGCTGCCTTTATGGCGAACCCTTTCGCATTCAACCCGAAAGCGAAGATT
TTGAACCCGGAGGAGAGCCTGGGCAAGGTGGACGCAGACGGGAACACAGC
GCTTATTCATGCCATTAAAACTGGGTCCGAAAAAGCCTTCTTCACCCTCC
TCCACGACAAAGATCTTTCCTACATCAACCGTCAAAACACTAAGGGTGCC
ACGGCACTCAACGTTGCTTCTCACCGAGGTCAAATCGAGCAAGTTCGTGC
CCTCCTTACCCTTGCCGGTGCCGACGTGAACATCCCCAACAGCAGCGGTA
GCACCTCCCTCATCCAAGCCTCCCATTTCGGTCACACCGTCGTCGTCCGC
CTCCTCCTTACCCATGGCGCCCACGTGGATCTTCCTAACCATAAAGGGAC
CACCGCCCTGATGCGGGCGGCCCAGGAGGGACATTTACAAGTCGTCGCAG
CGTTGCTCAACACAGGGGGGGACGTGAACAAGCGCAACCACGAGCGGATG
AATGCGCTGATGCTCGCATCCCAACGAGGGCACGATGGGATTGTGTCCCT
CTTGATCAAGCAAGGGGCTGATATCGACTGCCAGACCGTCCAGGGGTCCA
CGGCATTGATGCTTGCGTGCAAGCGGCAGCATGAGGCGGTAGTACGCGTG
TTATTGACGGCTGGGGCCGAAATGTTCGTCAAGGACTCGAGAGGGAGGAC
AGCGAGGGATACTGCGCTCAAGAGAAATCACAAACCGATCATTGCGATGC
TGCAGGCAAGTCGCGTGCTTTCCCTGTGCCAGATCTTGTGAGCAGTCTGG
CACTG

protein sequence of jgi.p|Nanoce1779_2|208575

>mRNA_8564-protein ID=mRNA_8564-protein|Name=jgi.p|Nanoce1779_2|208575|organism=Nannochloropsis oceanica|type=polypeptide|length=414bp
MHSVSFAISPYVCVMCHARTPSPSTSFGHSYREQRPLLAQLHVARSKRNT
SSQYPVISFCTSLVVTATMEEQQIPQPAPPAAAGGADAAAHTPPNRVKTG
GTGGGGEEEGTEAMMVVDGEEMDPPSADFQAEVAAFLADPATASKPDPPD
LAAFMANPFAFNPKAKILNPEESLGKVDADGNTALIHAIKTGSEKAFFTL
LHDKDLSYINRQNTKGATALNVASHRGQIEQVRALLTLAGADVNIPNSSG
STSLIQASHFGHTVVVRLLLTHGAHVDLPNHKGTTALMRAAQEGHLQVVA
ALLNTGGDVNKRNHERMNALMLASQRGHDGIVSLLIKQGADIDCQTVQGS
TALMLACKRQHEAVVRVLLTAGAEMFVKDSRGRTARDTALKRNHKPIIAM
LQASRVLSLCQIL*

mRNA from alignment at scaffold_26:212816..214718+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8564 ID=mRNA_8564|Name=jgi.p|Nanoce1779_2|208575|organism=Nannochloropsis oceanica|type=mRNA|length=1903bp|location=Sequence derived from alignment at scaffold_26:212816..214718+ (Nannochloropsis oceanica)
GGTGGGTGGGGAGGGAGGGGAGGTCGACCAGCAACGGGTGCCCCCTAAAA
ATGCAATTTCACTTGCACGTCAAAGAATATGGATAGCACGATGATCAGTG
TGCTGTGCACTTGTCCTTGGGGTGCGAGGTGCTTGGGAGAAAAACGCGGG
CTCGTAAGATATCAAGGCATGCTTGTCTCTTTGGCCCACGAGGAGTCTCT
TCGCCACGCGTTAAGCGAAGGCAAGGAAAGCTAATCCCATGTCAACGCAC
TCGGCCACGCCCGGCGTTCACGTGCTCACAAAAAAATCCCGAGGCGTTTG
CGGTGCACGCCTCGGCCGCAGCTATAGGGGCGAGAAGCGCGGTGTGGTGC
GTGAATGTCCACTGATTTGAAACATTGGACAGACGGAGGAGCCCGATAAA
TGCATTCTGTGTCTTTTGCCATATCTCCTTACGTATGTGTCATGTGCCAC
GCACGGACTCCTTCCCCCTCCACCTCATTTGGACATAGCTATAGGGAGCA
GCGCCCACTCTTGGCGCAGCTGCACGTGGCGCGGAGCAAGCGCAATACAA
GTAGCCAATATCCTGTCATCTCGTTCTGCACCAGCCTCGTCGTCACTGCA
ACGATGGAGGAGCAACAAATCCCCCAACCCGCTCCACCAGCGGCAGCAGG
CGGTGCGGATGCGGCAGCACACACCCCTCCTAATCGGGTCAAGACCGGGG
GGACTGGTGGAGGAGGCGAGGAGGAGGGCACAGAGGCCATGATGGTCGTG
GATGGAGAGGAGATGGACCCCCCCTCCGCCGATTTCCAAGCGGAAGTCGC
CGCATTTCTGGCAGACCCCGCCACAGCGTCGAAGCCTGACCCGCCTGATC
TCGCTGCCTTTATGGCGAACCCTTTCGCATTCAACCCGAAAGCGAAGATT
TTGAACCCGGAGGAGAGCCTGGGCAAGGTGGACGCAGACGGGAACACAGC
GCTTATTCATGCCATTAAAACTGGGTCCGAAAAGTACGTTGTTGAACAAA
GGGAGGGAGGGAGGGGAAATTGGAAGAGGGAGGAGGGAAAAAGTCTTGGA
TGTTTATCGCTTTGATTTTGCGGCTGATATAGTGTATGTGTGAATATTTC
CTCAACAAAACTCGCCCCTCCCTCCCTCCCTTTCCCACCAACCACACAGA
GCCTTCTTCACCCTCCTCCACGACAAAGATCTTTCCTACATCAACCGTCA
AAACACTAAGGGTGCCACGGCACTCAACGTTGCTTCTCACCGAGGTCAAA
TCGAGCAAGTTCGTGCCCTCCTTACCCTTGCCGGTGCCGACGTGAACATC
CCCAACAGCAGCGGTAGCACCTCCCTCATCCAAGCCTCCCATTTCGGTCA
CACCGTCGTCGTCCGCCTCCTCCTTACCCATGGCGCCCACGTGGATCTTC
CTAACCATAAAGGGACCACCGCCCTGATGCGGGCGGCCCAGGAGGGACAT
TTACAAGTCGTCGCAGCGTTGCTCAACACAGGGGGGGACGTGAACAAGCG
CAACCACGAGCGGATGAATGCGCTGATGCTCGCATCCCAACGAGGGCACG
ATGGGATTGTGTCCCTCTTGATCAAGCAAGGGGCTGATATCGACTGCCAG
ACCGTCCAGGGGTCCACGGCATTGATGCTTGCGTGCAAGCGGCAGCATGA
GGCGGTAGTACGCGTGTTATTGACGGCTGGGGCCGAAATGTTCGTCAAGG
ACTCGAGAGGGAGGACAGCGAGGGATACTGCGCTCAAGAGAAATCACAAA
CCGATCATTGCGATGCTGCAGGCAAGTCGGCAGGTGAGGCTAATGCAGAT
GGAAGCCCGCGTCCACCGCGCTCATTTATTGGTGAAACTCTATGAATTAA
ATGGCGCGAAGCGTGCTTTCCCTGTGCCAGATCTTGTGAGCAGTCTGGCA
CTG

Coding sequence (CDS) from alignment at scaffold_26:212816..214718+

>mRNA_8564 ID=mRNA_8564|Name=jgi.p|Nanoce1779_2|208575|organism=Nannochloropsis oceanica|type=CDS|length=3726bp|location=Sequence derived from alignment at scaffold_26:212816..214718+ (Nannochloropsis oceanica)
ATGCATTCTGTGTCTTTTGCCATATCTCCTTACGTATGTGTCATGTGCCA
CGCACGGACTCCTTCCCCCTCCACCTCATTTGGACATAGCTATAGGGAGC
AGCGCCCACTCTTGGCGCAGCTGCACGTGGCGCGGAGCAAGCGCAATACA
AGTAGCCAATATCCTGTCATCTCGTTCTGCACCAGCCTCGTCGTCACTGC
AACGATGGAGGAGCAACAAATCCCCCAACCCGCTCCACCAGCGGCAGCAG
GCGGTGCGGATGCGGCAGCACACACCCCTCCTAATCGGGTCAAGACCGGG
GGGACTGGTGGAGGAGGCGAGGAGGAGGGCACAGAGGCCATGATGGTCGT
GGATGGAGAGGAGATGGACCCCCCCTCCGCCGATTTCCAAGCGGAAGTCG
CCGCATTTCTGGCAGACCCCGCCACAGCGTCGAAGCCTGACCCGCCTGAT
CTCGCTGCCTTTATGGCGAACCCTTTCGCATTCAACCCGAAAGCGAAGAT
TTTGAACCCGGAGGAGAGCCTGGGCAAGGTGGACGCAGACGGGAACACAG
CGCTTATTCATGCCATTAAAACTGGGTCCGAAAAAGCCTTCTTCACCCTC
CTCCACGACAAAGATCTTTCCTACATCAACCGTCAAAACACTAAGGGTGC
CACGGCACTCAACGTTGCTTCTCACCGAGGTCAAATCGAGCAAGTTCGTG
CCCTCCTTACCCTTGCCGGTGCCGACGTGAACATCCCCAACAGCAGCGGT
AGCACCTCCCTCATCCAAGCCTCCCATTTCGGTCACACCGTCGTCGTCCG
CCTCCTCCTTACCCATGGCGCCCACGTGGATCTTCCTAACCATAAAGGGA
CCACCGCCCTGATGCGGGCGGCCCAGGAGGGACATTTACAAGTCGTCGCA
GCGTTGCTCAACACAGGGGGGGACGTGAACAAGCGCAACCACGAGCGGAT
GAATGCGCTGATGCTCGCATCCCAACGAGGGCACGATGGGATTGTGTCCC
TCTTGATCAAGCAAGGGGCTGATATCGACTGCCAGACCGTCCAGGGGTCC
ACGGCATTGATGCTTGCGTGCAAGCGGCAGCATGAGGCGGTAGTACGCGT
GTTATTGACGGCTGGGGCCGAAATGTTCGTCAAGGACTCGAGAGGGAGGA
CAGCGAGGGATACTGCGCTCAAGAGAAATCACAAACCGATCATTGCGATG
CTGCAGGCAAGTCGCGTGCTTTCCCTGTGCCAGATCTTGTGAATGCATTC
TGTGTCTTTTGCCATATCTCCTTACGTATGTGTCATGTGCCACGCACGGA
CTCCTTCCCCCTCCACCTCATTTGGACATAGCTATAGGGAGCAGCGCCCA
CTCTTGGCGCAGCTGCACGTGGCGCGGAGCAAGCGCAATACAAGTAGCCA
ATATCCTGTCATCTCGTTCTGCACCAGCCTCGTCGTCACTGCAACGATGG
AGGAGCAACAAATCCCCCAACCCGCTCCACCAGCGGCAGCAGGCGGTGCG
GATGCGGCAGCACACACCCCTCCTAATCGGGTCAAGACCGGGGGGACTGG
TGGAGGAGGCGAGGAGGAGGGCACAGAGGCCATGATGGTCGTGGATGGAG
AGGAGATGGACCCCCCCTCCGCCGATTTCCAAGCGGAAGTCGCCGCATTT
CTGGCAGACCCCGCCACAGCGTCGAAGCCTGACCCGCCTGATCTCGCTGC
CTTTATGGCGAACCCTTTCGCATTCAACCCGAAAGCGAAGATTTTGAACC
CGGAGGAGAGCCTGGGCAAGGTGGACGCAGACGGGAACACAGCGCTTATT
CATGCCATTAAAACTGGGTCCGAAAAAGCCTTCTTCACCCTCCTCCACGA
CAAAGATCTTTCCTACATCAACCGTCAAAACACTAAGGGTGCCACGGCAC
TCAACGTTGCTTCTCACCGAGGTCAAATCGAGCAAGTTCGTGCCCTCCTT
ACCCTTGCCGGTGCCGACGTGAACATCCCCAACAGCAGCGGTAGCACCTC
CCTCATCCAAGCCTCCCATTTCGGTCACACCGTCGTCGTCCGCCTCCTCC
TTACCCATGGCGCCCACGTGGATCTTCCTAACCATAAAGGGACCACCGCC
CTGATGCGGGCGGCCCAGGAGGGACATTTACAAGTCGTCGCAGCGTTGCT
CAACACAGGGGGGGACGTGAACAAGCGCAACCACGAGCGGATGAATGCGC
TGATGCTCGCATCCCAACGAGGGCACGATGGGATTGTGTCCCTCTTGATC
AAGCAAGGGGCTGATATCGACTGCCAGACCGTCCAGGGGTCCACGGCATT
GATGCTTGCGTGCAAGCGGCAGCATGAGGCGGTAGTACGCGTGTTATTGA
CGGCTGGGGCCGAAATGTTCGTCAAGGACTCGAGAGGGAGGACAGCGAGG
GATACTGCGCTCAAGAGAAATCACAAACCGATCATTGCGATGCTGCAGGC
AAGTCGCGTGCTTTCCCTGTGCCAGATCTTGTGAATGCATTCTGTGTCTT
TTGCCATATCTCCTTACGTATGTGTCATGTGCCACGCACGGACTCCTTCC
CCCTCCACCTCATTTGGACATAGCTATAGGGAGCAGCGCCCACTCTTGGC
GCAGCTGCACGTGGCGCGGAGCAAGCGCAATACAAGTAGCCAATATCCTG
TCATCTCGTTCTGCACCAGCCTCGTCGTCACTGCAACGATGGAGGAGCAA
CAAATCCCCCAACCCGCTCCACCAGCGGCAGCAGGCGGTGCGGATGCGGC
AGCACACACCCCTCCTAATCGGGTCAAGACCGGGGGGACTGGTGGAGGAG
GCGAGGAGGAGGGCACAGAGGCCATGATGGTCGTGGATGGAGAGGAGATG
GACCCCCCCTCCGCCGATTTCCAAGCGGAAGTCGCCGCATTTCTGGCAGA
CCCCGCCACAGCGTCGAAGCCTGACCCGCCTGATCTCGCTGCCTTTATGG
CGAACCCTTTCGCATTCAACCCGAAAGCGAAGATTTTGAACCCGGAGGAG
AGCCTGGGCAAGGTGGACGCAGACGGGAACACAGCGCTTATTCATGCCAT
TAAAACTGGGTCCGAAAAAGCCTTCTTCACCCTCCTCCACGACAAAGATC
TTTCCTACATCAACCGTCAAAACACTAAGGGTGCCACGGCACTCAACGTT
GCTTCTCACCGAGGTCAAATCGAGCAAGTTCGTGCCCTCCTTACCCTTGC
CGGTGCCGACGTGAACATCCCCAACAGCAGCGGTAGCACCTCCCTCATCC
AAGCCTCCCATTTCGGTCACACCGTCGTCGTCCGCCTCCTCCTTACCCAT
GGCGCCCACGTGGATCTTCCTAACCATAAAGGGACCACCGCCCTGATGCG
GGCGGCCCAGGAGGGACATTTACAAGTCGTCGCAGCGTTGCTCAACACAG
GGGGGGACGTGAACAAGCGCAACCACGAGCGGATGAATGCGCTGATGCTC
GCATCCCAACGAGGGCACGATGGGATTGTGTCCCTCTTGATCAAGCAAGG
GGCTGATATCGACTGCCAGACCGTCCAGGGGTCCACGGCATTGATGCTTG
CGTGCAAGCGGCAGCATGAGGCGGTAGTACGCGTGTTATTGACGGCTGGG
GCCGAAATGTTCGTCAAGGACTCGAGAGGGAGGACAGCGAGGGATACTGC
GCTCAAGAGAAATCACAAACCGATCATTGCGATGCTGCAGGCAAGTCGCG
TGCTTTCCCTGTGCCAGATCTTGTGA

Synonyms

Publications