jgi.p|Nanoce1779_2|568828, mRNA_8821 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|568828
Unique NamemRNA_8821
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length618
Alignment locationscaffold_28:252077..252694 -

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Properties
Property NameValue
TranscriptId568914
TrackFilteredModels2
ProteinId568828
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_28supercontigscaffold_28:252077..252694 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|568828gene_8821Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8821CDS_8821Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|568828mRNA_8821-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8821 ID=mRNA_8821|Name=jgi.p|Nanoce1779_2|568828|organism=Nannochloropsis oceanica|type=mRNA|length=618bp
ATGTCAACAGTGAAGGGACGCGTGCTGCGGGAGGCATTCTTCTCGACAGC
CCACACGGGGACTGGCACAGGCAGTGAAGGGGGCTCGGATGAAACATTTG
AAATGGTTAAAGTATCGGTAGCTGTCTTCGGCTCGATGGTCGCAGTTTCT
GGCTCTATCGCGTACGGCGTCCATCATTTCGACCGGAACATGGCAGCGAC
GGAGATCAAGTATATCGAGGATAAGGCGGCGACGGAGATGATGCGCATCG
AGGACATGGCGGCGACGGAGATGGTACGTCTCCAGAACAAGGCGGCGACG
GACATCGCGCGCATCGAGGGCGAGCGAAGGTTGTCGGAAGAGCGTTTGAG
GGCGGAGGTGGAGTTGTACAAATATGATCTAGGACCGCGCATATCATATC
TGTACAGCTCCACCTCCGCCCTCAAACGCTCTTCCGACAACCTTCGCTCG
CCCTCGATGCGCGCGATGTCCGTCGCCGCCTTGTTCTGGAGACGTACCAT
CTCCGTCGCCGCCATGTCCTCGATGCGCACCATCTCCGTCGCTGCCAGCT
TGATCTCCGTCGCCACCTTATCCTCGATATACTTGATCTCCGTCGCTGCC
ATGTTCCGGTCGAAATGA
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protein sequence of jgi.p|Nanoce1779_2|568828

>mRNA_8821-protein ID=mRNA_8821-protein|Name=jgi.p|Nanoce1779_2|568828|organism=Nannochloropsis oceanica|type=polypeptide|length=206bp
MSTVKGRVLREAFFSTAHTGTGTGSEGGSDETFEMVKVSVAVFGSMVAVS
GSIAYGVHHFDRNMAATEIKYIEDKAATEMMRIEDMAATEMVRLQNKAAT
DIARIEGERRLSEERLRAEVELYKYDLGPRISYLYSSTSALKRSSDNLRS
PSMRAMSVAALFWRRTISVAAMSSMRTISVAASLISVATLSSIYLISVAA
MFRSK*
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mRNA from alignment at scaffold_28:252077..252694-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8821 ID=mRNA_8821|Name=jgi.p|Nanoce1779_2|568828|organism=Nannochloropsis oceanica|type=mRNA|length=618bp|location=Sequence derived from alignment at scaffold_28:252077..252694- (Nannochloropsis oceanica)
ATGTCAACAGTGAAGGGACGCGTGCTGCGGGAGGCATTCTTCTCGACAGC
CCACACGGGGACTGGCACAGGCAGTGAAGGGGGCTCGGATGAAACATTTG
AAATGGTTAAAGTATCGGTAGCTGTCTTCGGCTCGATGGTCGCAGTTTCT
GGCTCTATCGCGTACGGCGTCCATCATTTCGACCGGAACATGGCAGCGAC
GGAGATCAAGTATATCGAGGATAAGGCGGCGACGGAGATGATGCGCATCG
AGGACATGGCGGCGACGGAGATGGTACGTCTCCAGAACAAGGCGGCGACG
GACATCGCGCGCATCGAGGGCGAGCGAAGGTTGTCGGAAGAGCGTTTGAG
GGCGGAGGTGGAGTTGTACAAATATGATCTAGGACCGCGCATATCATATC
TGTACAGCTCCACCTCCGCCCTCAAACGCTCTTCCGACAACCTTCGCTCG
CCCTCGATGCGCGCGATGTCCGTCGCCGCCTTGTTCTGGAGACGTACCAT
CTCCGTCGCCGCCATGTCCTCGATGCGCACCATCTCCGTCGCTGCCAGCT
TGATCTCCGTCGCCACCTTATCCTCGATATACTTGATCTCCGTCGCTGCC
ATGTTCCGGTCGAAATGA
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Coding sequence (CDS) from alignment at scaffold_28:252077..252694-

>mRNA_8821 ID=mRNA_8821|Name=jgi.p|Nanoce1779_2|568828|organism=Nannochloropsis oceanica|type=CDS|length=618bp|location=Sequence derived from alignment at scaffold_28:252077..252694- (Nannochloropsis oceanica)
ATGTCAACAGTGAAGGGACGCGTGCTGCGGGAGGCATTCTTCTCGACAGC
CCACACGGGGACTGGCACAGGCAGTGAAGGGGGCTCGGATGAAACATTTG
AAATGGTTAAAGTATCGGTAGCTGTCTTCGGCTCGATGGTCGCAGTTTCT
GGCTCTATCGCGTACGGCGTCCATCATTTCGACCGGAACATGGCAGCGAC
GGAGATCAAGTATATCGAGGATAAGGCGGCGACGGAGATGATGCGCATCG
AGGACATGGCGGCGACGGAGATGGTACGTCTCCAGAACAAGGCGGCGACG
GACATCGCGCGCATCGAGGGCGAGCGAAGGTTGTCGGAAGAGCGTTTGAG
GGCGGAGGTGGAGTTGTACAAATATGATCTAGGACCGCGCATATCATATC
TGTACAGCTCCACCTCCGCCCTCAAACGCTCTTCCGACAACCTTCGCTCG
CCCTCGATGCGCGCGATGTCCGTCGCCGCCTTGTTCTGGAGACGTACCAT
CTCCGTCGCCGCCATGTCCTCGATGCGCACCATCTCCGTCGCTGCCAGCT
TGATCTCCGTCGCCACCTTATCCTCGATATACTTGATCTCCGTCGCTGCC
ATGTTCCGGTCGAAATGA
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Synonyms
Publications