jgi.p|Nanoce1779_2|604428, mRNA_8901 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|604428
Unique NamemRNA_8901
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1342
Alignment locationscaffold_29:131778..133700 -

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Properties
Property NameValue
TranscriptId604514
TrackFilteredModels2
ProteinId604428
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_29supercontigscaffold_29:131778..133700 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604428gene_8901Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604428mRNA_8901-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8901CDS_8901Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8901 ID=mRNA_8901|Name=jgi.p|Nanoce1779_2|604428|organism=Nannochloropsis oceanica|type=mRNA|length=1342bp
ACAGCTGCACGATTTGGTTAAGCAAGAGCAGCAGCAGCCGGTGTTGAGCT
TGTACTGCATCCGCCACAAAGAGACGAGATAGATCGAGGAAGGAGGGCTT
ACTCCATTAGCAGCTAGCATTCAATACTAGGCATAATGAGCGGCAGCATG
AAGCCCTACAAATGGTTCCCTGGCACGTCAGGTTGGGTACACGAGGTCCT
GAACAAGCTCCCGGTGAACATGCGAACCAAGCTTCGTTCCTTGGCCCTGT
TCCGTCCCGACGACATCAACGATCTTTATCCCTTCCCTCGCAACCGTATC
TCCTACCCGGGCGTGGAGAGGATAAAGGGTTTCCGTTATCCGGCCCCCGG
GTCGAGGGGCAAGGTGAATGTGCCCCAGAGCGAGAGTGATGATAGGCTGT
ATGATATCAAGTACTTTGACCATGATACGCGCCGCCGGCCCCAAGAGATT
TACTCCTGGACACCCGATTTCAAGCGAGTGGCGCAGGCTGAGTCCCCGGA
GCCTGCCAAGCTGATGGGCAGTCCCGGGAATAAGAACCCTGCCGTCCTTG
CCTACGATCCTACAGGGCTGCGCAGCGCCATGAGCGCCACTAACCAAGAA
CTTCAGAAGGCCCTCGATAAAGCCATGCCCGATCACCAAGTACAGTATGC
ATGGCAAGGAGATGAGGAGGCGATCATTAAGAAGTGTGAGGTAAATGGCT
TGCCTGTCCCACCGGGGAAGCGGGCAAAGTTTAACATCCCAGTCATGTCG
TTGCAGAAGCGGTGGTAGAGGAAGGAAAGAAGGAAAGAATGGAGGAGGGA
GGCAAGGGAGGGGGGAAAGGGAGGAGGGGAAAAGAGGAATGAGAAGCTTG
TGTTGACATTGGCGGTGCCGTCTATGTTGAGGCAAGGCTTATAAAGGAAA
TGGATGGATGAATGGTGGGAAGGAGAAGGGGAGATTTTAGTGTGTGTTCA
GGTTTGGTTGGATTTAGATTTAAACGAGGAAATGAAATACTAGTACAGAA
GGTGGAAAGGAAGAAGAGGGGGAAGAAGGGAGGGGGACATAAGGAGAGTG
AGAGAAAATCAGTTTGAGGGAAAAGAAAGAGAGAACTGACTATATATGGG
AACAGGATAAAAGAAGGAAGAAAAAAAGGAAGATGAGGGTGAAGAAGGTG
AAGATGAAGGTGAAGATGGACAAATTCTTAGGAATTTCCCTGCGGCGCTT
CTTCCGTATCATTTTCTTGCGCATAAGACTCATTTTTGATAAATTGGGTG
ACAACGCAAAAAAAAAAAGCCTAAAAATAATCAAAAGCAGCAGCAACAGC
AACAAAACAGCGTCCCTTTCTGTGAAAAATATTGTGGTTGAA
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protein sequence of jgi.p|Nanoce1779_2|604428

>mRNA_8901-protein ID=mRNA_8901-protein|Name=jgi.p|Nanoce1779_2|604428|organism=Nannochloropsis oceanica|type=polypeptide|length=211bp
MSGSMKPYKWFPGTSGWVHEVLNKLPVNMRTKLRSLALFRPDDINDLYPF
PRNRISYPGVERIKGFRYPAPGSRGKVNVPQSESDDRLYDIKYFDHDTRR
RPQEIYSWTPDFKRVAQAESPEPAKLMGSPGNKNPAVLAYDPTGLRSAMS
ATNQELQKALDKAMPDHQVQYAWQGDEEAIIKKCEVNGLPVPPGKRAKFN
IPVMSLQKRW*
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mRNA from alignment at scaffold_29:131778..133700-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8901 ID=mRNA_8901|Name=jgi.p|Nanoce1779_2|604428|organism=Nannochloropsis oceanica|type=mRNA|length=1923bp|location=Sequence derived from alignment at scaffold_29:131778..133700- (Nannochloropsis oceanica)
ACAGCTGCACGATTTGGTTAAGCAAGAGCAGCAGCAGCCGGTGTTGAGCT
TGTACTGCATCCGCCACAAAGAGACGAGATAGATCGAGGAAGGAGGGCTT
ACTCCATTAGCAGCTAGCATTCAATACTAGGCATAATGAGCGGCAGCATG
AAGCCCTACAAATGGTTCCCTGGCACGTCAGGTTGGGTACACGAGGTCCT
GAACAAGCTCCCGGTGAACATGCGAACCAAGGTAGGGAGTACAGGGAGTG
AGGGAGAGAGAAGTAGGGGAATTGATGATGACGCCAGTGGTGCTTGGCGG
CATGACGGCATTTATCAGCATTCACTTGCTATGCGCACCTTCTTCAAGGC
TCGCTACTCTTCGGGATTGTTCAGCTGTTTTATCCGGATATTTTCCCTCA
TTTCGTCGAAACTCCCACTCTCTCCCCTCCCTCCCTCGCAACCACAACAG
CTTCGTTCCTTGGCCCTGTTCCGTCCCGACGACATCAACGATCTTTATCC
CTTCCCTCGCAACCGTATCTCCTACCCGGGCGTGGAGAGGATAAAGGGTT
TCCGTTATCCGGCCCCCGGGTCGAGGGGCAAGGTGAATGTGCCCCAGAGC
GAGAGTGATGATAGGTACGGAAGAGGGATGGAGAGAAAGAGGGAGGAGGA
GGAAGAGACAGGCGGGAGGGCCGGGTGAGATGTCGTCTCTTGTTCGGCAA
GCTGTCTCTGATTGCATGCAAGAATTTAAAACCTCTCTTACTCACGCGTG
TCGCGTTTGCATTCTTCTGCGTCCTTTTCGCTGATCGATTTCTCCCTCTC
CCTTTCTCTCCCTCTGCTCCCCCCCCCCCTTTCCTCTTTTCCCTCCTCTT
TCCCCTCAAGGCTGTATGATATCAAGTACTTTGACCATGATACGCGCCGC
CGGCCCCAAGAGATTTACTCCTGGACACCCGATTTCAAGCGAGTGGCGCA
GGCTGAGTCCCCGGAGCCTGCCAAGCTGATGGGCAGGTAGGTGAAAAGGG
AGGGAGGGAGGGAAGGAGGGAGTGTCAGAATGTACGGCGGGCGAGATGAT
AGACCACTCAACCCTCCCTCCGTTCCTCCCTTCTTCCCACCGCTCCCTCC
AGTCCCGGGAATAAGAACCCTGCCGTCCTTGCCTACGATCCTACAGGGCT
GCGCAGCGCCATGAGCGCCACTAACCAAGAACTTCAGAAGGCCCTCGATA
AAGCCATGCCCGATCACCAAGTACAGTATGCATGGCAAGGAGATGAGGAG
GCGATCATTAAGAAGTGTGAGGTAAATGGCTTGCCTGTCCCACCGGGGAA
GCGGGCAAAGTTTAACATCCCAGTCATGTCGTTGCAGAAGCGGTGGTAGA
GGAAGGAAAGAAGGAAAGAATGGAGGAGGGAGGCAAGGGAGGGGGGAAAG
GGAGGAGGGGAAAAGAGGAATGAGAAGCTTGTGTTGACATTGGCGGTGCC
GTCTATGTTGAGGCAAGGCTTATAAAGGAAATGGATGGATGAATGGTGGG
AAGGAGAAGGGGAGATTTTAGTGTGTGTTCAGGTTTGGTTGGATTTAGAT
TTAAACGAGGAAATGAAATACTAGTACAGAAGGTGGAAAGGAAGAAGAGG
GGGAAGAAGGGAGGGGGACATAAGGAGAGTGAGAGAAAATCAGTTTGAGG
GAAAAGAAAGAGAGAACTGACTATATATGGGAACAGGATAAAAGAAGGAA
GAAAAAAAGGAAGATGAGGGTGAAGAAGGTGAAGATGAAGGTGAAGATGG
ACAAATTCTTAGGAATTTCCCTGCGGCGCTTCTTCCGTATCATTTTCTTG
CGCATAAGACTCATTTTTGATAAATTGGGTGACAACGCAAAAAAAAAAAG
CCTAAAAATAATCAAAAGCAGCAGCAACAGCAACAAAACAGCGTCCCTTT
CTGTGAAAAATATTGTGGTTGAA
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Coding sequence (CDS) from alignment at scaffold_29:131778..133700-

>mRNA_8901 ID=mRNA_8901|Name=jgi.p|Nanoce1779_2|604428|organism=Nannochloropsis oceanica|type=CDS|length=2532bp|location=Sequence derived from alignment at scaffold_29:131778..133700- (Nannochloropsis oceanica)
TCCCGGGAATAAGAACCCTGCCGTCCTTGCCTACGATCCTACAGGGCTGC
GCAGCGCCATGAGCGCCACTAACCAAGAACTTCAGAAGGCCCTCGATAAA
GCCATGCCCGATCACCAAGTACAGTATGCATGGCAAGGAGATGAGGAGGC
GATCATTAAGAAGTGTGAGGTAAATGGCTTGCCTGTCCCACCGGGGAAGC
GGGCAAAGTTTAACATCCCAGTCATGTCGTTGCAGAAGCGGTGGTAGGCT
GTATGATATCAAGTACTTTGACCATGATACGCGCCGCCGGCCCCAAGAGA
TTTACTCCTGGACACCCGATTTCAAGCGAGTGGCGCAGGCTGAGTCCCCG
GAGCCTGCCAAGCTGATGGGCAGCTTCGTTCCTTGGCCCTGTTCCGTCCC
GACGACATCAACGATCTTTATCCCTTCCCTCGCAACCGTATCTCCTACCC
GGGCGTGGAGAGGATAAAGGGTTTCCGTTATCCGGCCCCCGGGTCGAGGG
GCAAGGTGAATGTGCCCCAGAGCGAGAGTGATGATAGATGAGCGGCAGCA
TGAAGCCCTACAAATGGTTCCCTGGCACGTCAGGTTGGGTACACGAGGTC
CTGAACAAGCTCCCGGTGAACATGCGAACCAAGTCCCGGGAATAAGAACC
CTGCCGTCCTTGCCTACGATCCTACAGGGCTGCGCAGCGCCATGAGCGCC
ACTAACCAAGAACTTCAGAAGGCCCTCGATAAAGCCATGCCCGATCACCA
AGTACAGTATGCATGGCAAGGAGATGAGGAGGCGATCATTAAGAAGTGTG
AGGTAAATGGCTTGCCTGTCCCACCGGGGAAGCGGGCAAAGTTTAACATC
CCAGTCATGTCGTTGCAGAAGCGGTGGTAGGCTGTATGATATCAAGTACT
TTGACCATGATACGCGCCGCCGGCCCCAAGAGATTTACTCCTGGACACCC
GATTTCAAGCGAGTGGCGCAGGCTGAGTCCCCGGAGCCTGCCAAGCTGAT
GGGCAGCTTCGTTCCTTGGCCCTGTTCCGTCCCGACGACATCAACGATCT
TTATCCCTTCCCTCGCAACCGTATCTCCTACCCGGGCGTGGAGAGGATAA
AGGGTTTCCGTTATCCGGCCCCCGGGTCGAGGGGCAAGGTGAATGTGCCC
CAGAGCGAGAGTGATGATAGATGAGCGGCAGCATGAAGCCCTACAAATGG
TTCCCTGGCACGTCAGGTTGGGTACACGAGGTCCTGAACAAGCTCCCGGT
GAACATGCGAACCAAGTCCCGGGAATAAGAACCCTGCCGTCCTTGCCTAC
GATCCTACAGGGCTGCGCAGCGCCATGAGCGCCACTAACCAAGAACTTCA
GAAGGCCCTCGATAAAGCCATGCCCGATCACCAAGTACAGTATGCATGGC
AAGGAGATGAGGAGGCGATCATTAAGAAGTGTGAGGTAAATGGCTTGCCT
GTCCCACCGGGGAAGCGGGCAAAGTTTAACATCCCAGTCATGTCGTTGCA
GAAGCGGTGGTAGGCTGTATGATATCAAGTACTTTGACCATGATACGCGC
CGCCGGCCCCAAGAGATTTACTCCTGGACACCCGATTTCAAGCGAGTGGC
GCAGGCTGAGTCCCCGGAGCCTGCCAAGCTGATGGGCAGCTTCGTTCCTT
GGCCCTGTTCCGTCCCGACGACATCAACGATCTTTATCCCTTCCCTCGCA
ACCGTATCTCCTACCCGGGCGTGGAGAGGATAAAGGGTTTCCGTTATCCG
GCCCCCGGGTCGAGGGGCAAGGTGAATGTGCCCCAGAGCGAGAGTGATGA
TAGATGAGCGGCAGCATGAAGCCCTACAAATGGTTCCCTGGCACGTCAGG
TTGGGTACACGAGGTCCTGAACAAGCTCCCGGTGAACATGCGAACCAAGT
CCCGGGAATAAGAACCCTGCCGTCCTTGCCTACGATCCTACAGGGCTGCG
CAGCGCCATGAGCGCCACTAACCAAGAACTTCAGAAGGCCCTCGATAAAG
CCATGCCCGATCACCAAGTACAGTATGCATGGCAAGGAGATGAGGAGGCG
ATCATTAAGAAGTGTGAGGTAAATGGCTTGCCTGTCCCACCGGGGAAGCG
GGCAAAGTTTAACATCCCAGTCATGTCGTTGCAGAAGCGGTGGTAGGCTG
TATGATATCAAGTACTTTGACCATGATACGCGCCGCCGGCCCCAAGAGAT
TTACTCCTGGACACCCGATTTCAAGCGAGTGGCGCAGGCTGAGTCCCCGG
AGCCTGCCAAGCTGATGGGCAGCTTCGTTCCTTGGCCCTGTTCCGTCCCG
ACGACATCAACGATCTTTATCCCTTCCCTCGCAACCGTATCTCCTACCCG
GGCGTGGAGAGGATAAAGGGTTTCCGTTATCCGGCCCCCGGGTCGAGGGG
CAAGGTGAATGTGCCCCAGAGCGAGAGTGATGATAGATGAGCGGCAGCAT
GAAGCCCTACAAATGGTTCCCTGGCACGTCAGGTTGGGTACACGAGGTCC
TGAACAAGCTCCCGGTGAACATGCGAACCAAG
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Synonyms
Publications