jgi.p|Nanoce1779_2|245869, mRNA_579 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|245869
Unique Name	mRNA_579
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	863
Alignment location	scaffold_3:1421811..1423933 -

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Properties


Property Name	Value
TranscriptId	245955
Track	FilteredModels2
ProteinId	245869

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:1421811..1423933 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|245869	gene_579	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|245869	mRNA_579-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_579	CDS_579	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:1421811..1423933-
coding sequence from alignment at scaffold_3:1421811..1423933-

mRNA sequence

>mRNA_579 ID=mRNA_579|Name=jgi.p|Nanoce1779_2|245869|organism=Nannochloropsis oceanica|type=mRNA|length=863bp
CTTTCATGTCGATGCAACAGGGCGACGGACTGGGTGACCATGGTCAGGAT
AGACGCCTACGCAGCGATAGCGGAGCTTCTACACAAGTCGCAGATTGAGG
ACCTCCTCTCTAAGCAGTTTTTGTATGTTGACGGGCGTTGGTGGGATTTG
CTCCGAACGGAAATCTTTGCAACGGGCCTCATCACCATGGACAATGGAGA
CGGTCCGCTATGTACCACGTCGGACGAGATTGTGTCAAGATGGCAGCAGA
CGTTGGGCTCTCTTGACGCGGTCCTGCACCAGGTCGGGCACTATGTCATA
ACAATATTGAATAATAATATGGCCCACGCCGTAACCTACGGTACAGCTAC
GCACTACAAAGCAAGTGCCACACAGGGACACACAAGGGTCTTCGCCGGGA
ATTACGAATTTAACTTGGTCTTCTCTTATGAGCTGGGCTGGCGTATCAAG
GGCTTGAAGTTCACATTAATGTTTATGGACGGCAATCTGTCTCTGACGTA
AACCCCGATAGGAGCGATGAAAAGGATCAACTAAATGAAGGGTGGAGGAA
TGGAATGAGAGATGGCGAGGCACCCAATTGTAAAGCGCGGGTGAGAGCAT
GTCATATAAGTCCCTGTATGATATATATGAATGGTAGTAGAGCGAGACAG
AAAGAGAGACGAGAAAGGAGGTAACAATCCTCACTTGGCACGCATATCAG
GCCATGTACAAAAGAAGGGATCCTGCCTCATGTCATGAGGTAAACACTGG
CATCAAGTTTTAGGGACAGGGGCTGAGCGGTGGCCAAGTTATTGGGCACC
AAGGAAAGAGAAAATGGGAGAGATAGAGAAAGGGCGACTTTAGACATGTC
TGGCAGTAGCGAC

protein sequence of jgi.p|Nanoce1779_2|245869

>mRNA_579-protein ID=mRNA_579-protein|Name=jgi.p|Nanoce1779_2|245869|organism=Nannochloropsis oceanica|type=polypeptide|length=154bp
MVRIDAYAAIAELLHKSQIEDLLSKQFLYVDGRWWDLLRTEIFATGLITM
DNGDGPLCTTSDEIVSRWQQTLGSLDAVLHQVGHYVITILNNNMAHAVTY
GTATHYKASATQGHTRVFAGNYEFNLVFSYELGWRIKGLKFTLMFMDGNL
SLT*

mRNA from alignment at scaffold_3:1421811..1423933-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_579 ID=mRNA_579|Name=jgi.p|Nanoce1779_2|245869|organism=Nannochloropsis oceanica|type=mRNA|length=2123bp|location=Sequence derived from alignment at scaffold_3:1421811..1423933- (Nannochloropsis oceanica)
CTTTCATGTCGATGCAACAGGGCGACGGACTGGGTGACCATGGTCAGGAT
AGACGCCTACGCAGCGATAGCGGAGCTTCTACACAAGTCGCAGGTGCACA
ATCTCACCACTGTGGGTTTTAAGTGCTTCACTCTATATGACCGACTCAGC
GGCCGTGTTTGTGAGACAGTACACTCTGTTAGTTGTTATTATTGCCGAGA
TTCCGGTGGCGGTACTTGTCCTTGTTCAAGCCTGCCTCACGTCCCCTTCC
CACTCGACCCACTCCCGTCCTCTGATAGATTGAGGACCTCCTCTCTAAGC
AGTTTTTGTATGTTGACGGGCGTTGGTGGGATTTGCTCCGAACGGAAATC
TTTGCAACGGTGAGGAAAGGAGGGCTGGAGGGGGGGAAGAGGAAGGGATA
AGGAAAAATAGAAGAGATTACGGAGGCTCTTTCATTCGTGTATTTTGAAT
CGTAAGCCCAGGATTGCTGTGTTTAAGCATAGAATGCGCCCGCTGGTGGG
CGAATGGATTTCTCCATCTGATTTGGCGGCCGACTGATTTGTCTTTTTTT
GCGCCCACGCGAATATGCATATCTAGGGCCTCATCACCATGGACAATGGA
GACGGTCCGCTATGTACCACGTCGGACGAGATTGTGTCAAGATGGCAGCA
GACGTTGGGCTCTCTTGACGCGGTCCTGCACCAGGTAAGGAACTGTCAGC
AAGGGTAATATCGAAAGATGAACAAGTCACGGAGTATGGCAGGCTTCAGG
CGCATTCTGTTCACTCATTATTCACATATTTTTTATGACAGGTCGGGCAC
TATGTCATAACAATATTGGTTCGTAGGGGTGGGGGCTGGGTAATATAATA
TTTGTAGCCTTGTCCATGCCCGCGAGAGACTGACGTCCTCTCCCTCCTTC
CCTCCCTCCCTCCCTTCCTCCCCGGCGTATCTTCTGTCGAGTAGAATAAT
AATATGGCCCACGCCGTAACCTACGGTACAGCTACGCACTACAAAGCAAG
TGCCACACAGGGACACACAAGGGTCTTCGCCGGGAATTACGAATTTAACT
TGGTCTTCTCTTATGAGCTGGTAGGACACATGTGTATGCTTTGGTGTGGA
TGAGGGTCTTGGAGAATGTCCTTCGTGAAATTTGCAAGGTGATGATTTTG
GTTGATATGGAGAAGGCAATGGATGTTGGAGCTCTATTCGCCGGTGTAAA
TCATGCTGGCCCGCGGACCCTAGTGCTTGGGCAGGTGGAGGGGGCTGGGG
GATGATAAGGTTGTCATTTTAGAGACCAAATGAATCGCTAATTCCTGTCG
TTCACGCGCCTCATATATATCGCTATACATTCATATATAGGGCTGGCGTA
TCAAGGGCTTGAAGTTCACATTAATGTACGTGCCAGCAGATGGTTGGAGG
GAGGGGTGGGGGGAAAAGAAAATGGATGGGGGAAAAGGATGAGAAGGGCG
TCAGCCACCATCGAACTGCTCCTATGTCTCTCATCATATATTCCTTCTGC
TTCTTCCTTATTCCTGCTTTGTTTTTCGGCGTTGGCTGTCGGATATCATT
TTTTTCATCGAAATGCAAAGCCTTTCGATGGCAGTATCAGGAGCCCAAGC
CCGAAGCATAAATTCTCCCTCCTTTCTTTTGTCTTCTCTGGTGCATCTTA
CTGTGACAGTGCACCTGTGAAAAACCTGGTCTGCCAAAATTATTGCCTTT
TCCCTTCTCCCCTTCTTCCTTCCTTTGCAGGTTTATGGACGGCAATCTGT
CTCTGACGTAAACCCCGATAGGAGCGATGAAAAGGATCAACTAAATGAAG
GGTGGAGGAATGGAATGAGAGATGGCGAGGCACCCAATTGTAAAGCGCGG
GTGAGAGCATGTCATATAAGTCCCTGTATGATATATATGAATGGTAGTAG
AGCGAGACAGAAAGAGAGACGAGAAAGGAGGTAACAATCCTCACTTGGCA
CGCATATCAGGCCATGTACAAAAGAAGGGATCCTGCCTCATGTCATGAGG
TAAACACTGGCATCAAGTTTTAGGGACAGGGGCTGAGCGGTGGCCAAGTT
ATTGGGCACCAAGGAAAGAGAAAATGGGAGAGATAGAGAAAGGGCGACTT
TAGACATGTCTGGCAGTAGCGAC

Coding sequence (CDS) from alignment at scaffold_3:1421811..1423933-

>mRNA_579 ID=mRNA_579|Name=jgi.p|Nanoce1779_2|245869|organism=Nannochloropsis oceanica|type=CDS|length=3234bp|location=Sequence derived from alignment at scaffold_3:1421811..1423933- (Nannochloropsis oceanica)
GTTTATGGACGGCAATCTGTCTCTGACGTAAGGCTGGCGTATCAAGGGCT
TGAAGTTCACATTAATAATAATAATATGGCCCACGCCGTAACCTACGGTA
CAGCTACGCACTACAAAGCAAGTGCCACACAGGGACACACAAGGGTCTTC
GCCGGGAATTACGAATTTAACTTGGTCTTCTCTTATGAGCTGGTCGGGCA
CTATGTCATAACAATATTGGGCCTCATCACCATGGACAATGGAGACGGTC
CGCTATGTACCACGTCGGACGAGATTGTGTCAAGATGGCAGCAGACGTTG
GGCTCTCTTGACGCGGTCCTGCACCAGATTGAGGACCTCCTCTCTAAGCA
GTTTTTGTATGTTGACGGGCGTTGGTGGGATTTGCTCCGAACGGAAATCT
TTGCAACGATGGTCAGGATAGACGCCTACGCAGCGATAGCGGAGCTTCTA
CACAAGTCGCAGGTTTATGGACGGCAATCTGTCTCTGACGTAAGGCTGGC
GTATCAAGGGCTTGAAGTTCACATTAATAATAATAATATGGCCCACGCCG
TAACCTACGGTACAGCTACGCACTACAAAGCAAGTGCCACACAGGGACAC
ACAAGGGTCTTCGCCGGGAATTACGAATTTAACTTGGTCTTCTCTTATGA
GCTGGTCGGGCACTATGTCATAACAATATTGGGCCTCATCACCATGGACA
ATGGAGACGGTCCGCTATGTACCACGTCGGACGAGATTGTGTCAAGATGG
CAGCAGACGTTGGGCTCTCTTGACGCGGTCCTGCACCAGATTGAGGACCT
CCTCTCTAAGCAGTTTTTGTATGTTGACGGGCGTTGGTGGGATTTGCTCC
GAACGGAAATCTTTGCAACGATGGTCAGGATAGACGCCTACGCAGCGATA
GCGGAGCTTCTACACAAGTCGCAGGTTTATGGACGGCAATCTGTCTCTGA
CGTAAGGCTGGCGTATCAAGGGCTTGAAGTTCACATTAATAATAATAATA
TGGCCCACGCCGTAACCTACGGTACAGCTACGCACTACAAAGCAAGTGCC
ACACAGGGACACACAAGGGTCTTCGCCGGGAATTACGAATTTAACTTGGT
CTTCTCTTATGAGCTGGTCGGGCACTATGTCATAACAATATTGGGCCTCA
TCACCATGGACAATGGAGACGGTCCGCTATGTACCACGTCGGACGAGATT
GTGTCAAGATGGCAGCAGACGTTGGGCTCTCTTGACGCGGTCCTGCACCA
GATTGAGGACCTCCTCTCTAAGCAGTTTTTGTATGTTGACGGGCGTTGGT
GGGATTTGCTCCGAACGGAAATCTTTGCAACGATGGTCAGGATAGACGCC
TACGCAGCGATAGCGGAGCTTCTACACAAGTCGCAGGTTTATGGACGGCA
ATCTGTCTCTGACGTAAGGCTGGCGTATCAAGGGCTTGAAGTTCACATTA
ATAATAATAATATGGCCCACGCCGTAACCTACGGTACAGCTACGCACTAC
AAAGCAAGTGCCACACAGGGACACACAAGGGTCTTCGCCGGGAATTACGA
ATTTAACTTGGTCTTCTCTTATGAGCTGGTCGGGCACTATGTCATAACAA
TATTGGGCCTCATCACCATGGACAATGGAGACGGTCCGCTATGTACCACG
TCGGACGAGATTGTGTCAAGATGGCAGCAGACGTTGGGCTCTCTTGACGC
GGTCCTGCACCAGATTGAGGACCTCCTCTCTAAGCAGTTTTTGTATGTTG
ACGGGCGTTGGTGGGATTTGCTCCGAACGGAAATCTTTGCAACGATGGTC
AGGATAGACGCCTACGCAGCGATAGCGGAGCTTCTACACAAGTCGCAGGT
TTATGGACGGCAATCTGTCTCTGACGTAAGGCTGGCGTATCAAGGGCTTG
AAGTTCACATTAATAATAATAATATGGCCCACGCCGTAACCTACGGTACA
GCTACGCACTACAAAGCAAGTGCCACACAGGGACACACAAGGGTCTTCGC
CGGGAATTACGAATTTAACTTGGTCTTCTCTTATGAGCTGGTCGGGCACT
ATGTCATAACAATATTGGGCCTCATCACCATGGACAATGGAGACGGTCCG
CTATGTACCACGTCGGACGAGATTGTGTCAAGATGGCAGCAGACGTTGGG
CTCTCTTGACGCGGTCCTGCACCAGATTGAGGACCTCCTCTCTAAGCAGT
TTTTGTATGTTGACGGGCGTTGGTGGGATTTGCTCCGAACGGAAATCTTT
GCAACGATGGTCAGGATAGACGCCTACGCAGCGATAGCGGAGCTTCTACA
CAAGTCGCAGGTTTATGGACGGCAATCTGTCTCTGACGTAAGGCTGGCGT
ATCAAGGGCTTGAAGTTCACATTAATAATAATAATATGGCCCACGCCGTA
ACCTACGGTACAGCTACGCACTACAAAGCAAGTGCCACACAGGGACACAC
AAGGGTCTTCGCCGGGAATTACGAATTTAACTTGGTCTTCTCTTATGAGC
TGGTCGGGCACTATGTCATAACAATATTGGGCCTCATCACCATGGACAAT
GGAGACGGTCCGCTATGTACCACGTCGGACGAGATTGTGTCAAGATGGCA
GCAGACGTTGGGCTCTCTTGACGCGGTCCTGCACCAGATTGAGGACCTCC
TCTCTAAGCAGTTTTTGTATGTTGACGGGCGTTGGTGGGATTTGCTCCGA
ACGGAAATCTTTGCAACGATGGTCAGGATAGACGCCTACGCAGCGATAGC
GGAGCTTCTACACAAGTCGCAGGTTTATGGACGGCAATCTGTCTCTGACG
TAAGGCTGGCGTATCAAGGGCTTGAAGTTCACATTAATAATAATAATATG
GCCCACGCCGTAACCTACGGTACAGCTACGCACTACAAAGCAAGTGCCAC
ACAGGGACACACAAGGGTCTTCGCCGGGAATTACGAATTTAACTTGGTCT
TCTCTTATGAGCTGGTCGGGCACTATGTCATAACAATATTGGGCCTCATC
ACCATGGACAATGGAGACGGTCCGCTATGTACCACGTCGGACGAGATTGT
GTCAAGATGGCAGCAGACGTTGGGCTCTCTTGACGCGGTCCTGCACCAGA
TTGAGGACCTCCTCTCTAAGCAGTTTTTGTATGTTGACGGGCGTTGGTGG
GATTTGCTCCGAACGGAAATCTTTGCAACGATGGTCAGGATAGACGCCTA
CGCAGCGATAGCGGAGCTTCTACACAAGTCGCAG

Synonyms

Publications