jgi.p|Nanoce1779_2|550913, mRNA_265 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|550913
Unique NamemRNA_265
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1479
Alignment locationscaffold_3:662188..663777 -

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Properties
Property NameValue
TranscriptId550999
TrackFilteredModels2
ProteinId550913
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:662188..663777 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|550913gene_265Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|550913mRNA_265-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_265CDS_265Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_265 ID=mRNA_265|Name=jgi.p|Nanoce1779_2|550913|organism=Nannochloropsis oceanica|type=mRNA|length=1479bp
CTACCGGCCTGCTGCGTCTGTCTTTCACATACGTAATCTGTCGATGGTGG
TGATTGCAGGGACTATTCTTGCCTTGTACATCATGGCTTTCTCATATGGT
CCCAGGAAGGCCTTTAAAGGAGGCGACCAGGGGCCGGGCGCCCAGCTCAA
TGCAGCCAGAGCGGGCCGAAAACGAGGACAGTCTGCCCTGGTCGAGACCG
AGTACAACCAGAATCCTCCTTTTCACGTCGCATTTTCCACGTCATGCAGC
CCCTTCCAAGACTGGCAGTCCCTCCTCGTCTTTCTAACCGCCGACATGGT
GGGACAAAAGGGCCCACTGACGCGCATTGCTAGCGGATGCACTTTAGAGG
AGCAAGCTGCCCTCGAGACCGTGTACGCCAAATTGGACCAAGGCCGAAAT
AAATTCCGTATACACTTCACGCCCGATTTTAGCAAGGACGAAGCCTCGGG
AGAAACGTATTACTTTTACAACAAGCCGGGCGGGTTGCAGCATTGGCTGG
CAAGCCCAGCAAGCCCGCCGGACGACACGGTGATCGCTGTGATCGATCCC
GATTTTATCTTCATGCGTCCGCTCACGGCCAAGGTAAAGGCTGATGGCAT
CATATTCTCGGGCCCCATCCAAGCAGAGGACCTGATCGAAGAAGTAAGCG
TCGGGCATCCGGCTGCGCAATATTACGGAATTGGGGATAAGTGGATCGAG
TTTAATTTGACTTATATCGCTGGTGAGGACAGCCCTGCCCTTGCTGTCAA
GAGCATGTCGGCTTGGAAACACTATTCTATTGGACCCCCCTATATTGTGG
CTAAGGCTGATATGGTGCGAATTGCGCAGCTCTGGCATTCGGTCGTGCCT
CGTGTTTACGAAGGCCATCCGCATTTGCTCGCCGAGATGTATGCTTATAG
CGTGGCGGCCGCTCATTTGGAATTGCCTCATTTACGGCTTGATGGTTATA
TGACTAGTGAAGCCGAGGGCTATGGCGAGGCCTGGCCTCTGGTGGATCTC
CTCACCGATGAAAGCATCTGCTCGGAGGACCTGTCCTTGCACACCACCCT
CCTACCCACCTTTCTTCACTACTGCCAGCACTACAAGGTCGGTACCGAAT
TTGTCTACTGGAAGCGAGACTTGGACGAGAATTTCTTCTCCTGTGGCGGC
TCCCCGCTGCCCCTCCCCAATTTGGAGCAGGTCCGCGAATACCTCGACCC
CATCTCTGGCCCGGCTCTTTCAGTCAATGACAGGGCGTATCACAAGTATC
ACACCTTCCAATATTGTCAGGTGGTCATGAAAACCAACAAGGCCCTGCAG
AAGTATAAGTCCCTCTTTTGTGACGTCGACGACAATGGCGAAGCTGCTTT
ATCTATTGAATAACATAAAATTTTAACATTCGAAGATCGAAATTAACGAT
GGCTAGATTGATTACATCCCTCTCCGTTCATGTACATGAAGACAATAAAG
CAGAAAAAGTACTTTCGAAGCGCCCTTAT
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protein sequence of jgi.p|Nanoce1779_2|550913

>mRNA_265-protein ID=mRNA_265-protein|Name=jgi.p|Nanoce1779_2|550913|organism=Nannochloropsis oceanica|type=polypeptide|length=440bp
MVVIAGTILALYIMAFSYGPRKAFKGGDQGPGAQLNAARAGRKRGQSALV
ETEYNQNPPFHVAFSTSCSPFQDWQSLLVFLTADMVGQKGPLTRIASGCT
LEEQAALETVYAKLDQGRNKFRIHFTPDFSKDEASGETYYFYNKPGGLQH
WLASPASPPDDTVIAVIDPDFIFMRPLTAKVKADGIIFSGPIQAEDLIEE
VSVGHPAAQYYGIGDKWIEFNLTYIAGEDSPALAVKSMSAWKHYSIGPPY
IVAKADMVRIAQLWHSVVPRVYEGHPHLLAEMYAYSVAAAHLELPHLRLD
GYMTSEAEGYGEAWPLVDLLTDESICSEDLSLHTTLLPTFLHYCQHYKVG
TEFVYWKRDLDENFFSCGGSPLPLPNLEQVREYLDPISGPALSVNDRAYH
KYHTFQYCQVVMKTNKALQKYKSLFCDVDDNGEAALSIE*
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mRNA from alignment at scaffold_3:662188..663777-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_265 ID=mRNA_265|Name=jgi.p|Nanoce1779_2|550913|organism=Nannochloropsis oceanica|type=mRNA|length=1590bp|location=Sequence derived from alignment at scaffold_3:662188..663777- (Nannochloropsis oceanica)
CTACCGGCCTGCTGCGTCTGTCTTTCACATACGTAATCTGTCGATGGTGG
TGATTGCAGGGACTATTCTTGCCTTGTACATCATGGCTTTCTCATATGGT
CCCAGGAAGGCCTTTAAAGGAGGCGACCAGGGGCCGGGCGCCCAGCTCAA
TGCAGCCAGAGCGGGCCGAAAACGAGGACAGTCTGCCCTGGTCGAGACCG
AGTACAACCAGAATCCTCCTTTTCACGTCGCATTTTCCACGGTATGTAGA
GCGATTGACCTTACCAATTTGAAAAAGAGCCAGTCGAGGATTCTGTGAGC
TCCCGCCATATCCCTCCAATCTGACTTGCCGCTTCTTCCCAATACTCCCT
AGTCATGCAGCCCCTTCCAAGACTGGCAGTCCCTCCTCGTCTTTCTAACC
GCCGACATGGTGGGACAAAAGGGCCCACTGACGCGCATTGCTAGCGGATG
CACTTTAGAGGAGCAAGCTGCCCTCGAGACCGTGTACGCCAAATTGGACC
AAGGCCGAAATAAATTCCGTATACACTTCACGCCCGATTTTAGCAAGGAC
GAAGCCTCGGGAGAAACGTATTACTTTTACAACAAGCCGGGCGGGTTGCA
GCATTGGCTGGCAAGCCCAGCAAGCCCGCCGGACGACACGGTGATCGCTG
TGATCGATCCCGATTTTATCTTCATGCGTCCGCTCACGGCCAAGGTAAAG
GCTGATGGCATCATATTCTCGGGCCCCATCCAAGCAGAGGACCTGATCGA
AGAAGTAAGCGTCGGGCATCCGGCTGCGCAATATTACGGAATTGGGGATA
AGTGGATCGAGTTTAATTTGACTTATATCGCTGGTGAGGACAGCCCTGCC
CTTGCTGTCAAGAGCATGTCGGCTTGGAAACACTATTCTATTGGACCCCC
CTATATTGTGGCTAAGGCTGATATGGTGCGAATTGCGCAGCTCTGGCATT
CGGTCGTGCCTCGTGTTTACGAAGGCCATCCGCATTTGCTCGCCGAGATG
TATGCTTATAGCGTGGCGGCCGCTCATTTGGAATTGCCTCATTTACGGCT
TGATGGTTATATGACTAGTGAAGCCGAGGGCTATGGCGAGGCCTGGCCTC
TGGTGGATCTCCTCACCGATGAAAGCATCTGCTCGGAGGACCTGTCCTTG
CACACCACCCTCCTACCCACCTTTCTTCACTACTGCCAGCACTACAAGGT
CGGTACCGAATTTGTCTACTGGAAGCGAGACTTGGACGAGAATTTCTTCT
CCTGTGGCGGCTCCCCGCTGCCCCTCCCCAATTTGGAGCAGGTCCGCGAA
TACCTCGACCCCATCTCTGGCCCGGCTCTTTCAGTCAATGACAGGGCGTA
TCACAAGTATCACACCTTCCAATATTGTCAGGTGGTCATGAAAACCAACA
AGGCCCTGCAGAAGTATAAGTCCCTCTTTTGTGACGTCGACGACAATGGC
GAAGCTGCTTTATCTATTGAATAACATAAAATTTTAACATTCGAAGATCG
AAATTAACGATGGCTAGATTGATTACATCCCTCTCCGTTCATGTACATGA
AGACAATAAAGCAGAAAAAGTACTTTCGAAGCGCCCTTAT
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Coding sequence (CDS) from alignment at scaffold_3:662188..663777-

>mRNA_265 ID=mRNA_265|Name=jgi.p|Nanoce1779_2|550913|organism=Nannochloropsis oceanica|type=CDS|length=2640bp|location=Sequence derived from alignment at scaffold_3:662188..663777- (Nannochloropsis oceanica)
TCATGCAGCCCCTTCCAAGACTGGCAGTCCCTCCTCGTCTTTCTAACCGC
CGACATGGTGGGACAAAAGGGCCCACTGACGCGCATTGCTAGCGGATGCA
CTTTAGAGGAGCAAGCTGCCCTCGAGACCGTGTACGCCAAATTGGACCAA
GGCCGAAATAAATTCCGTATACACTTCACGCCCGATTTTAGCAAGGACGA
AGCCTCGGGAGAAACGTATTACTTTTACAACAAGCCGGGCGGGTTGCAGC
ATTGGCTGGCAAGCCCAGCAAGCCCGCCGGACGACACGGTGATCGCTGTG
ATCGATCCCGATTTTATCTTCATGCGTCCGCTCACGGCCAAGGTAAAGGC
TGATGGCATCATATTCTCGGGCCCCATCCAAGCAGAGGACCTGATCGAAG
AAGTAAGCGTCGGGCATCCGGCTGCGCAATATTACGGAATTGGGGATAAG
TGGATCGAGTTTAATTTGACTTATATCGCTGGTGAGGACAGCCCTGCCCT
TGCTGTCAAGAGCATGTCGGCTTGGAAACACTATTCTATTGGACCCCCCT
ATATTGTGGCTAAGGCTGATATGGTGCGAATTGCGCAGCTCTGGCATTCG
GTCGTGCCTCGTGTTTACGAAGGCCATCCGCATTTGCTCGCCGAGATGTA
TGCTTATAGCGTGGCGGCCGCTCATTTGGAATTGCCTCATTTACGGCTTG
ATGGTTATATGACTAGTGAAGCCGAGGGCTATGGCGAGGCCTGGCCTCTG
GTGGATCTCCTCACCGATGAAAGCATCTGCTCGGAGGACCTGTCCTTGCA
CACCACCCTCCTACCCACCTTTCTTCACTACTGCCAGCACTACAAGGTCG
GTACCGAATTTGTCTACTGGAAGCGAGACTTGGACGAGAATTTCTTCTCC
TGTGGCGGCTCCCCGCTGCCCCTCCCCAATTTGGAGCAGGTCCGCGAATA
CCTCGACCCCATCTCTGGCCCGGCTCTTTCAGTCAATGACAGGGCGTATC
ACAAGTATCACACCTTCCAATATTGTCAGGTGGTCATGAAAACCAACAAG
GCCCTGCAGAAGTATAAGTCCCTCTTTTGTGACGTCGACGACAATGGCGA
AGCTGCTTTATCTATTGAATAAATGGTGGTGATTGCAGGGACTATTCTTG
CCTTGTACATCATGGCTTTCTCATATGGTCCCAGGAAGGCCTTTAAAGGA
GGCGACCAGGGGCCGGGCGCCCAGCTCAATGCAGCCAGAGCGGGCCGAAA
ACGAGGACAGTCTGCCCTGGTCGAGACCGAGTACAACCAGAATCCTCCTT
TTCACGTCGCATTTTCCACGTCATGCAGCCCCTTCCAAGACTGGCAGTCC
CTCCTCGTCTTTCTAACCGCCGACATGGTGGGACAAAAGGGCCCACTGAC
GCGCATTGCTAGCGGATGCACTTTAGAGGAGCAAGCTGCCCTCGAGACCG
TGTACGCCAAATTGGACCAAGGCCGAAATAAATTCCGTATACACTTCACG
CCCGATTTTAGCAAGGACGAAGCCTCGGGAGAAACGTATTACTTTTACAA
CAAGCCGGGCGGGTTGCAGCATTGGCTGGCAAGCCCAGCAAGCCCGCCGG
ACGACACGGTGATCGCTGTGATCGATCCCGATTTTATCTTCATGCGTCCG
CTCACGGCCAAGGTAAAGGCTGATGGCATCATATTCTCGGGCCCCATCCA
AGCAGAGGACCTGATCGAAGAAGTAAGCGTCGGGCATCCGGCTGCGCAAT
ATTACGGAATTGGGGATAAGTGGATCGAGTTTAATTTGACTTATATCGCT
GGTGAGGACAGCCCTGCCCTTGCTGTCAAGAGCATGTCGGCTTGGAAACA
CTATTCTATTGGACCCCCCTATATTGTGGCTAAGGCTGATATGGTGCGAA
TTGCGCAGCTCTGGCATTCGGTCGTGCCTCGTGTTTACGAAGGCCATCCG
CATTTGCTCGCCGAGATGTATGCTTATAGCGTGGCGGCCGCTCATTTGGA
ATTGCCTCATTTACGGCTTGATGGTTATATGACTAGTGAAGCCGAGGGCT
ATGGCGAGGCCTGGCCTCTGGTGGATCTCCTCACCGATGAAAGCATCTGC
TCGGAGGACCTGTCCTTGCACACCACCCTCCTACCCACCTTTCTTCACTA
CTGCCAGCACTACAAGGTCGGTACCGAATTTGTCTACTGGAAGCGAGACT
TGGACGAGAATTTCTTCTCCTGTGGCGGCTCCCCGCTGCCCCTCCCCAAT
TTGGAGCAGGTCCGCGAATACCTCGACCCCATCTCTGGCCCGGCTCTTTC
AGTCAATGACAGGGCGTATCACAAGTATCACACCTTCCAATATTGTCAGG
TGGTCATGAAAACCAACAAGGCCCTGCAGAAGTATAAGTCCCTCTTTTGT
GACGTCGACGACAATGGCGAAGCTGCTTTATCTATTGAATAAATGGTGGT
GATTGCAGGGACTATTCTTGCCTTGTACATCATGGCTTTCTCATATGGTC
CCAGGAAGGCCTTTAAAGGAGGCGACCAGGGGCCGGGCGCCCAGCTCAAT
GCAGCCAGAGCGGGCCGAAAACGAGGACAGTCTGCCCTGGTCGAGACCGA
GTACAACCAGAATCCTCCTTTTCACGTCGCATTTTCCACG
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Synonyms
Publications