jgi.p|Nanoce1779_2|576323, mRNA_131 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|576323
Unique NamemRNA_131
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1552
Alignment locationscaffold_3:344011..345562 -

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Properties
Property NameValue
TranscriptId576409
TrackFilteredModels2
ProteinId576323
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:344011..345562 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576323gene_131Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576323mRNA_131-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_131CDS_131Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_131 ID=mRNA_131|Name=jgi.p|Nanoce1779_2|576323|organism=Nannochloropsis oceanica|type=mRNA|length=1552bp
GGAGGAGGGGGAAAAGAAGTGGAATGGAGGAGACGTGGGACATGGTAGTG
TGGATGATAGGAAGAAGAAAATTAAGAATAGCTGTGGTGCCAGGATGCAG
CAGCATTACGAGAATGAATATGAGGCAGAGAGTAAGGAGGAGAGAAAACA
GCGGAAGAGGGAGGAAAAAGAGCGCCGGCGTTTGGAAGAAGAGGAAGAAG
AGCAGAAGGCACGTGCTAGGAAGAAGCGTCGAAAGCATCACCGCCAGCAT
GAGGAGAGCAACGAGGCCAATAAGCCACGTTTCCTCGTCTCGCGAGACGA
CTGCACCTTGCTCAAGCTTCTCTCTGCTCCACACCTAAGCTTGGTCAAGC
TTTCGGGTAAGCGGAAGGTGGTCTTAAAGAATGTGGCGCTTTCGCGAAAA
GTGGAGGCCCGCGCTGCATTTCGGGAGGAGTTGAAGAAACTCCGACGACT
CACTCATGAAAATCTCGTGCCGGTAATCGCAGCAAGGATCGAGGATGAAA
CAGGAGGATTTTCTGCAGTTGGGTATGCGTTTCAAGAAGGATTAGTGGAT
CTCGGCGTTGTCCTTCTGAAGCCTCACACGATCGTCACGCTCGAGGATCG
GTTGCTGACTGCGTGTAAAGTGGCAGCTGCGTTGGATCATCTCCATCACA
AGGGACTGGTGCACGGTGCTTTAAGACCCACAAATGTCCTTGTTTCTTTC
CCCTCGCCTAAGCTACGTACAGTCAAGCTGACAGATCATGGTATCGGGCA
TCGAGCGCTGATGGTAGCCGGGCCCGGAGGGAATGGGAGTGCGGAGCGCA
TTGCTTTCACCGCTCCGGAGGTGCAGGATTTGATCATCTCCACGGCAGGA
GGAAAAGCAACACAAATGACCGGAGACGCAGCGGCAGCAGATATATGGAG
CATGGGTATTCTGTTGTTGGAGCTGATGGTGGGGAGGAAGGCGTGGGGGG
TAGCCAAGACTGCAACAGAGCTTAAGAAATTAGTCGCTGATTTCTCCCTT
GCTTCATTTCCGGGGTTGAGGCATCTAGAAAGTCTTATGCGGAGGCAAGT
GGGGGTTGGAGAGTGGGAAGATAGGCTGGAGGATATAAAAGGTTTGGCGG
AGGCGTGTTTGAGGAGGAAGGCCTCAGAACGCTTGTCGTCGCAGCAATTG
GTTGGGAAGCTTTCTTGCTTGAGCGCGGGAGTATTGTTTCATGTTTAGGG
ATAGGGTTGGTGCATCTAGTGCTCCTGTTGGTGGAGGTAGAGTTGGGGGA
AGTTATACAGCTGTCGGTGCTGTTGCAGTTGCTGCCACTTCCGGAGGTGG
GGGGGTGCGGGTGGAGTGAAAGGTTGTAGGGATGAGGAGAAGTAGGAGGA
GGCGAAGAAGCTGTATAGTAACATGGAGGCACACCGCTACTAGGACAACC
CAAGACAAAGAGGGGGACCTGAGTCGAAAAGAAATATGCAAAGCTAGGGA
CTGTGTGAGATGAGGGATACTAGTATGTGCGTCGTATTCGGGTGTGCAGC
TGAATGACACAAAAGAAATCAAAGTCAAATAACAAGTGGATGGAAATGAG
AG
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protein sequence of jgi.p|Nanoce1779_2|576323

>mRNA_131-protein ID=mRNA_131-protein|Name=jgi.p|Nanoce1779_2|576323|organism=Nannochloropsis oceanica|type=polypeptide|length=368bp
MQQHYENEYEAESKEERKQRKREEKERRRLEEEEEEQKARARKKRRKHHR
QHEESNEANKPRFLVSRDDCTLLKLLSAPHLSLVKLSGKRKVVLKNVALS
RKVEARAAFREELKKLRRLTHENLVPVIAARIEDETGGFSAVGYAFQEGL
VDLGVVLLKPHTIVTLEDRLLTACKVAAALDHLHHKGLVHGALRPTNVLV
SFPSPKLRTVKLTDHGIGHRALMVAGPGGNGSAERIAFTAPEVQDLIIST
AGGKATQMTGDAAAADIWSMGILLLELMVGRKAWGVAKTATELKKLVADF
SLASFPGLRHLESLMRRQVGVGEWEDRLEDIKGLAEACLRRKASERLSSQ
QLVGKLSCLSAGVLFHV*
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mRNA from alignment at scaffold_3:344011..345562-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_131 ID=mRNA_131|Name=jgi.p|Nanoce1779_2|576323|organism=Nannochloropsis oceanica|type=mRNA|length=1552bp|location=Sequence derived from alignment at scaffold_3:344011..345562- (Nannochloropsis oceanica)
GGAGGAGGGGGAAAAGAAGTGGAATGGAGGAGACGTGGGACATGGTAGTG
TGGATGATAGGAAGAAGAAAATTAAGAATAGCTGTGGTGCCAGGATGCAG
CAGCATTACGAGAATGAATATGAGGCAGAGAGTAAGGAGGAGAGAAAACA
GCGGAAGAGGGAGGAAAAAGAGCGCCGGCGTTTGGAAGAAGAGGAAGAAG
AGCAGAAGGCACGTGCTAGGAAGAAGCGTCGAAAGCATCACCGCCAGCAT
GAGGAGAGCAACGAGGCCAATAAGCCACGTTTCCTCGTCTCGCGAGACGA
CTGCACCTTGCTCAAGCTTCTCTCTGCTCCACACCTAAGCTTGGTCAAGC
TTTCGGGTAAGCGGAAGGTGGTCTTAAAGAATGTGGCGCTTTCGCGAAAA
GTGGAGGCCCGCGCTGCATTTCGGGAGGAGTTGAAGAAACTCCGACGACT
CACTCATGAAAATCTCGTGCCGGTAATCGCAGCAAGGATCGAGGATGAAA
CAGGAGGATTTTCTGCAGTTGGGTATGCGTTTCAAGAAGGATTAGTGGAT
CTCGGCGTTGTCCTTCTGAAGCCTCACACGATCGTCACGCTCGAGGATCG
GTTGCTGACTGCGTGTAAAGTGGCAGCTGCGTTGGATCATCTCCATCACA
AGGGACTGGTGCACGGTGCTTTAAGACCCACAAATGTCCTTGTTTCTTTC
CCCTCGCCTAAGCTACGTACAGTCAAGCTGACAGATCATGGTATCGGGCA
TCGAGCGCTGATGGTAGCCGGGCCCGGAGGGAATGGGAGTGCGGAGCGCA
TTGCTTTCACCGCTCCGGAGGTGCAGGATTTGATCATCTCCACGGCAGGA
GGAAAAGCAACACAAATGACCGGAGACGCAGCGGCAGCAGATATATGGAG
CATGGGTATTCTGTTGTTGGAGCTGATGGTGGGGAGGAAGGCGTGGGGGG
TAGCCAAGACTGCAACAGAGCTTAAGAAATTAGTCGCTGATTTCTCCCTT
GCTTCATTTCCGGGGTTGAGGCATCTAGAAAGTCTTATGCGGAGGCAAGT
GGGGGTTGGAGAGTGGGAAGATAGGCTGGAGGATATAAAAGGTTTGGCGG
AGGCGTGTTTGAGGAGGAAGGCCTCAGAACGCTTGTCGTCGCAGCAATTG
GTTGGGAAGCTTTCTTGCTTGAGCGCGGGAGTATTGTTTCATGTTTAGGG
ATAGGGTTGGTGCATCTAGTGCTCCTGTTGGTGGAGGTAGAGTTGGGGGA
AGTTATACAGCTGTCGGTGCTGTTGCAGTTGCTGCCACTTCCGGAGGTGG
GGGGGTGCGGGTGGAGTGAAAGGTTGTAGGGATGAGGAGAAGTAGGAGGA
GGCGAAGAAGCTGTATAGTAACATGGAGGCACACCGCTACTAGGACAACC
CAAGACAAAGAGGGGGACCTGAGTCGAAAAGAAATATGCAAAGCTAGGGA
CTGTGTGAGATGAGGGATACTAGTATGTGCGTCGTATTCGGGTGTGCAGC
TGAATGACACAAAAGAAATCAAAGTCAAATAACAAGTGGATGGAAATGAG
AG
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Coding sequence (CDS) from alignment at scaffold_3:344011..345562-

>mRNA_131 ID=mRNA_131|Name=jgi.p|Nanoce1779_2|576323|organism=Nannochloropsis oceanica|type=CDS|length=1104bp|location=Sequence derived from alignment at scaffold_3:344011..345562- (Nannochloropsis oceanica)
ATGCAGCAGCATTACGAGAATGAATATGAGGCAGAGAGTAAGGAGGAGAG
AAAACAGCGGAAGAGGGAGGAAAAAGAGCGCCGGCGTTTGGAAGAAGAGG
AAGAAGAGCAGAAGGCACGTGCTAGGAAGAAGCGTCGAAAGCATCACCGC
CAGCATGAGGAGAGCAACGAGGCCAATAAGCCACGTTTCCTCGTCTCGCG
AGACGACTGCACCTTGCTCAAGCTTCTCTCTGCTCCACACCTAAGCTTGG
TCAAGCTTTCGGGTAAGCGGAAGGTGGTCTTAAAGAATGTGGCGCTTTCG
CGAAAAGTGGAGGCCCGCGCTGCATTTCGGGAGGAGTTGAAGAAACTCCG
ACGACTCACTCATGAAAATCTCGTGCCGGTAATCGCAGCAAGGATCGAGG
ATGAAACAGGAGGATTTTCTGCAGTTGGGTATGCGTTTCAAGAAGGATTA
GTGGATCTCGGCGTTGTCCTTCTGAAGCCTCACACGATCGTCACGCTCGA
GGATCGGTTGCTGACTGCGTGTAAAGTGGCAGCTGCGTTGGATCATCTCC
ATCACAAGGGACTGGTGCACGGTGCTTTAAGACCCACAAATGTCCTTGTT
TCTTTCCCCTCGCCTAAGCTACGTACAGTCAAGCTGACAGATCATGGTAT
CGGGCATCGAGCGCTGATGGTAGCCGGGCCCGGAGGGAATGGGAGTGCGG
AGCGCATTGCTTTCACCGCTCCGGAGGTGCAGGATTTGATCATCTCCACG
GCAGGAGGAAAAGCAACACAAATGACCGGAGACGCAGCGGCAGCAGATAT
ATGGAGCATGGGTATTCTGTTGTTGGAGCTGATGGTGGGGAGGAAGGCGT
GGGGGGTAGCCAAGACTGCAACAGAGCTTAAGAAATTAGTCGCTGATTTC
TCCCTTGCTTCATTTCCGGGGTTGAGGCATCTAGAAAGTCTTATGCGGAG
GCAAGTGGGGGTTGGAGAGTGGGAAGATAGGCTGGAGGATATAAAAGGTT
TGGCGGAGGCGTGTTTGAGGAGGAAGGCCTCAGAACGCTTGTCGTCGCAG
CAATTGGTTGGGAAGCTTTCTTGCTTGAGCGCGGGAGTATTGTTTCATGT
TTAG
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Synonyms
Publications