jgi.p|Nanoce1779_2|576599, mRNA_226 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576599
Unique Name	mRNA_226
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1086
Alignment location	scaffold_3:565478..566656 +

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Properties


Property Name	Value
TranscriptId	576685
Track	FilteredModels2
ProteinId	576599

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:565478..566656 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576599	gene_226	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576599	mRNA_226-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_226	CDS_226	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:565478..566656+
coding sequence from alignment at scaffold_3:565478..566656+

mRNA sequence

>mRNA_226 ID=mRNA_226|Name=jgi.p|Nanoce1779_2|576599|organism=Nannochloropsis oceanica|type=mRNA|length=1086bp
GCTGCCGCGGCGGAGGCTTTCAGGCTCAATTGCTTGACCGTGGCAGCAGT
AAGGGGCTTGGATAAAAAGGCCCCCTTGGTAACCGCGCGCAGCAGCTGGT
ACAGGGCCTCGGCATCCTCCACCGCCGACGCCCCAAGAGTGAGAGTGTCC
AGCGGCGTGGCACCCAGGCTGCAGATCCGCAAGCTCCGCTGTAATAGGTA
ACCCGCGAGCTGTGCCGTAGTCTCATTGTCAATTCCACCCGCCAGCTCTC
CATGCTCCATGTCCTCCCTATCCTTCCAGGTCTCCTGCTTCTGTTGCCCC
AAGGCTATTCTATAACCCTCTGTAAGTGTATGCTCCTCCTCCTCTGCCGC
CAAAGCTACCTCCAGTTCCTCCTCCTCCTCCTCCACGCTCTTGGCCTCCT
CCAAATCGTCGGGGTCACTGGATACTCCCACAGGAGTATCGCCACGGCTT
CCGATACCGCTGCTGCTGTTGGTTGTGGTGGTATTGATGTTGCTGTGGCA
TTTACTACTGCTGCTGGGCAAGCAGCCCGCCCACACATGTTGTTGATGCT
GCAGCTGTTGCTTGAGGAGACGGCTGTACATGTAGTTAACCTTCTCGCGC
CTGACTGAGTAGCACAGCGGCTGCCGGTGTGGTAATTTTTGGGGAGACGA
GAGCGGGGACGACGGCAAGGGCGCGGCGGGCGGCGAGGAAGGCGAGGCCG
AGGCCTGATGCTGTCCAGCGCCTACAAGCTTTTTATTACGAGACTTCAGT
TCGTGCTTGAATAACTTCAGGTACAACCGAATCCACAGCGGGTCGTCGAT
GGCCAAGGCCTGCATGCGCTCCTCAGACCCTAATTTGCAGAACCATTCCC
ATAGGGAGACCAGCAGCGTGTCCTGGTTCCAATTGCTGTCTTCAGTCATG
GCTTACACTCAAGCAATCCCTCAACCACCCAACTAGCTATGTATGTACAG
GGTGGCTTGCTTCCGCAAACCTCCCTTCTTGGCTTTAGGGACAGTGCGAG
CAGCGCGTCTCGCGTAGGCGGTGCGTGGTTGTCGCTATTTACACGTCCAG
CCCGGCCCTGTGGTCTCCAATAGGTGATGACTCTGT

protein sequence of jgi.p|Nanoce1779_2|576599

>mRNA_226-protein ID=mRNA_226-protein|Name=jgi.p|Nanoce1779_2|576599|organism=Nannochloropsis oceanica|type=polypeptide|length=119bp
MLHVLPILPGLLLLLPQGYSITLCKCMLLLLCRQSYLQFLLLLLHALGLL
QIVGVTGYSHRSIATASDTAAAVGCGGIDVAVAFTTAAGQAARPHMLLML
QLLLEETAVHVVNLLAPD*

mRNA from alignment at scaffold_3:565478..566656+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_226 ID=mRNA_226|Name=jgi.p|Nanoce1779_2|576599|organism=Nannochloropsis oceanica|type=mRNA|length=1179bp|location=Sequence derived from alignment at scaffold_3:565478..566656+ (Nannochloropsis oceanica)
GCTGCCGCGGCGGAGGCTTTCAGGCTCAATTGCTTGACCGTGGCAGCAGT
AAGGGGCTTGGATAAAAAGGCCCCCTTGGTAACCGCGCGCAGCAGCTGGT
ACAGGGCCTCGGCATCCTCCACCGCCGACGCCCCAAGAGTGAGAGTGTCC
AGCGGCGTGGCACCCAGGCTGCAGATCCGCAAGCTCCGCTGTAATAGGTA
ACCCGCGAGCTGTGCCGTAGTCTCATTGTCAATTCCACCCGCCAGCTCTC
CATGCTCCATGTCCTCCCTATCCTTCCAGGTCTCCTGCTTCTGTTGCCCC
AAGGCTATTCTATAACCCTCTGTAAGTGTATGCTCCTCCTCCTCTGCCGC
CAAAGCTACCTCCAGTTCCTCCTCCTCCTCCTCCACGCTCTTGGCCTCCT
CCAAATCGTCGGGGTCACTGGATACTCCCACAGGAGTATCGCCACGGCTT
CCGATACCGCTGCTGCTGTTGGTTGTGGTGGTATTGATGTTGCTGTGGCA
TTTACTACTGCTGCTGGGCAAGCAGCCCGCCCACACATGTTGTTGATGCT
GCAGCTGTTGCTTGAGGAGACGGCTGTACATGTAGTTAACCTTCTCGCGC
CTGACTGAGTAGCACAGCGGCTGCCGGTGTGGTAATTTTTGGGGAGACGA
GAGCGGGGACGACGGCAAGGGCGCGGCGGGCGGCGAGGAAGGCGAGGCCG
AGGCCTGATGCTGTCCAGCGCCTACAAGCTTTTTATTACGAGACTTCAGT
TCGTGCTTGAATAACTTCAGGTACAACCGAATCCACAGCGGGTCGTCGAT
GGCCAAGGCCTGCATGCGCTCCTCAGACCCTAATTTGCAGAACCATTCCC
ATAGGGAGACCAGCAGCGTGTCCTGGTTCCAATTGCTGTCTTCAGTCATG
GCTTACACTCAAGCAATCCCTCAACCACCCAACTAGCTATGTATGTACAG
GGTGGCTTGCTTCCGCAAACCTATAAACGAAGGGATAGAAAGGGTGTTGC
GATGAGTGCGTGCATGCACGTGTCCCCTTACTCAAAACCACTTCCTCGCT
CCTTGTCCCTTACCTCCCTTCTTGGCTTTAGGGACAGTGCGAGCAGCGCG
TCTCGCGTAGGCGGTGCGTGGTTGTCGCTATTTACACGTCCAGCCCGGCC
CTGTGGTCTCCAATAGGTGATGACTCTGT

Coding sequence (CDS) from alignment at scaffold_3:565478..566656+

>mRNA_226 ID=mRNA_226|Name=jgi.p|Nanoce1779_2|576599|organism=Nannochloropsis oceanica|type=CDS|length=357bp|location=Sequence derived from alignment at scaffold_3:565478..566656+ (Nannochloropsis oceanica)
ATGCTCCATGTCCTCCCTATCCTTCCAGGTCTCCTGCTTCTGTTGCCCCA
AGGCTATTCTATAACCCTCTGTAAGTGTATGCTCCTCCTCCTCTGCCGCC
AAAGCTACCTCCAGTTCCTCCTCCTCCTCCTCCACGCTCTTGGCCTCCTC
CAAATCGTCGGGGTCACTGGATACTCCCACAGGAGTATCGCCACGGCTTC
CGATACCGCTGCTGCTGTTGGTTGTGGTGGTATTGATGTTGCTGTGGCAT
TTACTACTGCTGCTGGGCAAGCAGCCCGCCCACACATGTTGTTGATGCTG
CAGCTGTTGCTTGAGGAGACGGCTGTACATGTAGTTAACCTTCTCGCGCC
TGACTGA

Synonyms

Publications