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Properties
| Property Name | Value |
|---|
| TranscriptId | 576881 |
| Track | FilteredModels2 |
| ProteinId | 576795 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_3 | supercontig | scaffold_3:692155..694287 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_280 ID=mRNA_280|Name=jgi.p|Nanoce1779_2|576795|organism=Nannochloropsis oceanica|type=mRNA|length=1787bp
ACAGGACCACATCCAGCCAGAGAAGCCATGCCGCACGAAATCATCACGCT
GCAGGTGGGCCAGTGCGGCAATCAGATCGGCAGCGAGTTTTGGAAGCAAA
TCTGTGCGGAGCACGGCATCAGTCCCGATGGCATGCTTCAGGACTTCGCC
ACGGAGGGGAACGACCGCAAGGACGTCTTCTTCTATCAGGCGGACGATGA
TCACTACATTCCCCGGGCCTTATTGATGGACTTAGAGCCGCGTGTCATAA
ATTCGATTCTGAATTCGGAGTACCGCGGCTTGTACAACCAGGAGAATGTC
TTCATGGCTAGCAATGGTGGCGGGGCGGGTAACAATTGGGCGTCAGGCCA
TCGGCAGGCGGAGGAGTACCACGATCAGCTCATGGAGATGATCGATCGGG
AGGCGGATGGCAGTGACAGCCTGGAGGGGTTTGTTCTTTGTCACTCTATA
GCTGGTGGCACGGGCTCAGGGATGGGCTCCTACCTGCTCGAGCGACTCAA
CGATCACTTCCCCAAAAAGCTCATTCAGACCTACTCCGTCTTCCCCAATT
GGGATCAAACCCAAAGTGATGTGGTGGTGCAGCCATATAATTCCCTCCTT
ACGCTCAAGCGCCTAACCTTGAACGCGGATTGCGTGGTGGTCCTGGATAA
CACGGCCCTCAATCGCATTGCTGTGGACCGCCTGCGCATCACCAATCCTA
CTGTCAATCAACTCAATTCCCTCGTTTCTACGGTCATGGCTGCCTCCACC
ACCACCCTACGTTACCCCGGGTACATGAACAATGACCTTATCGGGCTGGT
CGCATCCCTCATCCCCACCCCTCGCTGCCATTTCCTCATGACGGGGTATA
CGCCCCTTGTGATCTCCGACGTGCAAACCTCCGCTGTGAGGAAAACAACC
GTCTTGGACGTCATGCGTCGCCTGACCCAAACAAAAAATATCATGGTGTC
TGCTTCTACGCGCACGGGGTGTTATATTTCCATTTTGAATATCATTCAGG
GAGACGTCGATCCGACCCAAGTTCACAAGGCTTTGCAGCGAATCCGCGAG
AGGAAATTAGTAAATTTTATCCCGTGGGGCCCGGCGTCGATTCAGGTGGC
TTTGTCAAGGAAAAGTGCATATGTTGAGACAGCGCACAAAGTCTCGGGAT
TAATGTTGGCGAATCATACATGTATGGCTAGCTTGTTCCAGCGGTCGGTA
AATCAATATGATAAGATTAGGAAGAGGAATGCCTTCGTCGAGAATTATCG
AAAAGAGCCCATGTTTCAGGATTCCCTGGATGAGTTTGATTCGTCTCGGG
AAGTGGTACAGGGATTGATTGATGAGTACAAAGCAGCTGAAGGGCCCGAT
TATATCTCTTGGGGCCACCAGGGAGGGATAGGGAGTAGCGCGGCGGGGGG
GTTGCCTGTGTCGGCGGTGGAGCGGCAGCAGCAGCCACAGCAGCAGCTAC
AACAACAACAGCCGCTGCAGGTGCCATCATCTGGATTCCAGCATCCGCAC
CAGCCGCACTAATGATGATGGAGAGAGAAAGAAGGGAGATGGAAGGGAGG
AAGGGATTGATGTTGTACAGTTTCCTGTGGACCGAGTGATGCATGTGGAA
TGATAGATAAGATAAGATAAGAAGGAAGGAGGGCAGCAGCTGAAGAAGGA
CAGGCAGAATAAGAGGGAGGAGAAAGGAGGCTGACGCAAACGACAAAAAA
TGAGTAGAATCGCAACCACATATTAACATCAACGACGACGACAACAACAC
CCGAGAGAAAGAATAAAAGGACGAATGAACGAATGAA back to topprotein sequence of jgi.p|Nanoce1779_2|576795 >mRNA_280-protein ID=mRNA_280-protein|Name=jgi.p|Nanoce1779_2|576795|organism=Nannochloropsis oceanica|type=polypeptide|length=495bp
MPHEIITLQVGQCGNQIGSEFWKQICAEHGISPDGMLQDFATEGNDRKDV
FFYQADDDHYIPRALLMDLEPRVINSILNSEYRGLYNQENVFMASNGGGA
GNNWASGHRQAEEYHDQLMEMIDREADGSDSLEGFVLCHSIAGGTGSGMG
SYLLERLNDHFPKKLIQTYSVFPNWDQTQSDVVVQPYNSLLTLKRLTLNA
DCVVVLDNTALNRIAVDRLRITNPTVNQLNSLVSTVMAASTTTLRYPGYM
NNDLIGLVASLIPTPRCHFLMTGYTPLVISDVQTSAVRKTTVLDVMRRLT
QTKNIMVSASTRTGCYISILNIIQGDVDPTQVHKALQRIRERKLVNFIPW
GPASIQVALSRKSAYVETAHKVSGLMLANHTCMASLFQRSVNQYDKIRKR
NAFVENYRKEPMFQDSLDEFDSSREVVQGLIDEYKAAEGPDYISWGHQGG
IGSSAAGGLPVSAVERQQQPQQQLQQQQPLQVPSSGFQHPHQPH* back to topmRNA from alignment at scaffold_3:692155..694287- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_280 ID=mRNA_280|Name=jgi.p|Nanoce1779_2|576795|organism=Nannochloropsis oceanica|type=mRNA|length=2133bp|location=Sequence derived from alignment at scaffold_3:692155..694287- (Nannochloropsis oceanica)
ACAGGACCACATCCAGCCAGAGAAGCCATGCCGCACGAAATCATCACGCT
GCAGGTGGGCCAGTGCGGCAATCAGATCGGCAGCGAGTTTTGGAAGCAAA
TCTGTGCGGAGCACGGCATCAGTCCCGATGGCATGCTTCAGGACTTCGCC
ACGGAGGGGAACGACCGCAAGGACGTCTTCTTCTATCAGGCGGACGATGA
TCACTACATTCCCCGGGCCTTATTGATGGACTTAGAGCCGCGTGTCATAA
ATTCGATTCTGAATTCGGAGTACCGCGGCTTGTACAACCAGGAGAATGTC
TTCATGGCTAGCAATGGTGGCGGGGCGGGTAACAATTGGGCGTCAGGCCA
TCGGCAGGCGGAGGAGTACCACGATCAGCTCATGGAGATGATCGATCGGG
AGGCGGATGGCAGTGACAGCCTGGAGGGGTTTGTTCTTTGTCACTCTATA
GCTGGTGGCACGGGCTCAGGGATGGTGCGTACTGGGGAGGGTAGGAGAGG
GATTATTTCCTTGTCTGCCGTGGAAGTAGTGACAAGATATCTGTATGTTT
CTTTCATCTATGCCACATAGGTCTTTATATTCTACGCTTGAAACGCCTTT
TCTCACATACCACTTCCCCCTTCCTTTCCTTTTCTTTCCTTCCCTTCACC
ACCACCTATCCCGAAGGGCTCCTACCTGCTCGAGCGACTCAACGATCACT
TCCCCAAAAAGCTCATTCAGACCTACTCCGTCTTCCCCAATTGGGATCAA
ACCCAAAGTGATGTGGTGGTGCAGCCATATAATTCCCTCCTTACGCTCAA
GCGCCTAACCTTGAACGCGGATTGCGTGGTGGTCCTGGATAACACGGCCC
TCAATCGCATTGCTGTGGACCGCCTGCGCATCACCAATCCTACTGTCAAT
CAACTCAATTCCCTCGTTTCTACGGTACGTGGATTAATTGCACGCTCGGT
CTCCTTGTCGGCGGTCGTCTTGTCGACAGTCTTCAAGGACTTGCCGTTTA
CGCTTGTGAACACATTTTATCCTTACTAATTTCCGTCACTCCCTCCCTCC
TTCTCTCCCTTCCTCTCTTCCTCCCTAGGTCATGGCTGCCTCCACCACCA
CCCTACGTTACCCCGGGTACATGAACAATGACCTTATCGGGCTGGTCGCA
TCCCTCATCCCCACCCCTCGCTGCCATTTCCTCATGACGGGGTATACGCC
CCTTGTGATCTCCGACGTGCAAACCTCCGCTGTGAGGAAAACAACCGTCT
TGGACGTCATGCGTCGCCTGACCCAAACAAAAAATATCATGGTGTCTGCT
TCTACGCGCACGGGGTGTTATATTTCCATTTTGAATATCATTCAGGGAGA
CGTCGATCCGACCCAAGTTCACAAGGCTTTGCAGCGAATCCGCGAGAGGA
AATTAGTAAATTTTATCCCGTGGGGCCCGGCGTCGATTCAGGTGGCTTTG
TCAAGGAAAAGTGCATATGTTGAGACAGCGCACAAAGTCTCGGGATTAAT
GTTGGCGAATCATACATGTATGGCTAGCTTGTTCCAGCGGTCGGTAAATC
AATATGATAAGATTAGGAAGAGGAATGCCTTCGTCGAGAATTATCGAAAA
GAGCCCATGTTTCAGGATTCCCTGGATGAGTTTGATTCGTCTCGGGAAGT
GGTACAGGGATTGATTGATGAGTACAAAGCAGCTGAAGGGCCCGATTATA
TCTCTTGGGGCCACCAGGGAGGGATAGGGAGTAGCGCGGCGGGGGGGTTG
CCTGTGTCGGCGGTGGAGCGGCAGCAGCAGCCACAGCAGCAGCTACAACA
ACAACAGCCGCTGCAGGTGCCATCATCTGGATTCCAGCATCCGCACCAGC
CGCACTAATGATGATGGAGAGAGAAAGAAGGGAGATGGAAGGGAGGAAGG
GATTGATGTTGTACAGTTTCCTGTGGACCGAGTGATGCATGTGGAATGAT
AGATAAGATAAGATAAGAAGGAAGGAGGGCAGCAGCTGAAGAAGGACAGG
CAGAATAAGAGGGAGGAGAAAGGAGGCTGACGCAAACGACAAAAAATGAG
TAGAATCGCAACCACATATTAACATCAACGACGACGACAACAACACCCGA
GAGAAAGAATAAAAGGACGAATGAACGAATGAA back to topCoding sequence (CDS) from alignment at scaffold_3:692155..694287- >mRNA_280 ID=mRNA_280|Name=jgi.p|Nanoce1779_2|576795|organism=Nannochloropsis oceanica|type=CDS|length=4455bp|location=Sequence derived from alignment at scaffold_3:692155..694287- (Nannochloropsis oceanica)
GTCATGGCTGCCTCCACCACCACCCTACGTTACCCCGGGTACATGAACAA
TGACCTTATCGGGCTGGTCGCATCCCTCATCCCCACCCCTCGCTGCCATT
TCCTCATGACGGGGTATACGCCCCTTGTGATCTCCGACGTGCAAACCTCC
GCTGTGAGGAAAACAACCGTCTTGGACGTCATGCGTCGCCTGACCCAAAC
AAAAAATATCATGGTGTCTGCTTCTACGCGCACGGGGTGTTATATTTCCA
TTTTGAATATCATTCAGGGAGACGTCGATCCGACCCAAGTTCACAAGGCT
TTGCAGCGAATCCGCGAGAGGAAATTAGTAAATTTTATCCCGTGGGGCCC
GGCGTCGATTCAGGTGGCTTTGTCAAGGAAAAGTGCATATGTTGAGACAG
CGCACAAAGTCTCGGGATTAATGTTGGCGAATCATACATGTATGGCTAGC
TTGTTCCAGCGGTCGGTAAATCAATATGATAAGATTAGGAAGAGGAATGC
CTTCGTCGAGAATTATCGAAAAGAGCCCATGTTTCAGGATTCCCTGGATG
AGTTTGATTCGTCTCGGGAAGTGGTACAGGGATTGATTGATGAGTACAAA
GCAGCTGAAGGGCCCGATTATATCTCTTGGGGCCACCAGGGAGGGATAGG
GAGTAGCGCGGCGGGGGGGTTGCCTGTGTCGGCGGTGGAGCGGCAGCAGC
AGCCACAGCAGCAGCTACAACAACAACAGCCGCTGCAGGTGCCATCATCT
GGATTCCAGCATCCGCACCAGCCGCACTAAGGCTCCTACCTGCTCGAGCG
ACTCAACGATCACTTCCCCAAAAAGCTCATTCAGACCTACTCCGTCTTCC
CCAATTGGGATCAAACCCAAAGTGATGTGGTGGTGCAGCCATATAATTCC
CTCCTTACGCTCAAGCGCCTAACCTTGAACGCGGATTGCGTGGTGGTCCT
GGATAACACGGCCCTCAATCGCATTGCTGTGGACCGCCTGCGCATCACCA
ATCCTACTGTCAATCAACTCAATTCCCTCGTTTCTACGATGCCGCACGAA
ATCATCACGCTGCAGGTGGGCCAGTGCGGCAATCAGATCGGCAGCGAGTT
TTGGAAGCAAATCTGTGCGGAGCACGGCATCAGTCCCGATGGCATGCTTC
AGGACTTCGCCACGGAGGGGAACGACCGCAAGGACGTCTTCTTCTATCAG
GCGGACGATGATCACTACATTCCCCGGGCCTTATTGATGGACTTAGAGCC
GCGTGTCATAAATTCGATTCTGAATTCGGAGTACCGCGGCTTGTACAACC
AGGAGAATGTCTTCATGGCTAGCAATGGTGGCGGGGCGGGTAACAATTGG
GCGTCAGGCCATCGGCAGGCGGAGGAGTACCACGATCAGCTCATGGAGAT
GATCGATCGGGAGGCGGATGGCAGTGACAGCCTGGAGGGGTTTGTTCTTT
GTCACTCTATAGCTGGTGGCACGGGCTCAGGGATGGTCATGGCTGCCTCC
ACCACCACCCTACGTTACCCCGGGTACATGAACAATGACCTTATCGGGCT
GGTCGCATCCCTCATCCCCACCCCTCGCTGCCATTTCCTCATGACGGGGT
ATACGCCCCTTGTGATCTCCGACGTGCAAACCTCCGCTGTGAGGAAAACA
ACCGTCTTGGACGTCATGCGTCGCCTGACCCAAACAAAAAATATCATGGT
GTCTGCTTCTACGCGCACGGGGTGTTATATTTCCATTTTGAATATCATTC
AGGGAGACGTCGATCCGACCCAAGTTCACAAGGCTTTGCAGCGAATCCGC
GAGAGGAAATTAGTAAATTTTATCCCGTGGGGCCCGGCGTCGATTCAGGT
GGCTTTGTCAAGGAAAAGTGCATATGTTGAGACAGCGCACAAAGTCTCGG
GATTAATGTTGGCGAATCATACATGTATGGCTAGCTTGTTCCAGCGGTCG
GTAAATCAATATGATAAGATTAGGAAGAGGAATGCCTTCGTCGAGAATTA
TCGAAAAGAGCCCATGTTTCAGGATTCCCTGGATGAGTTTGATTCGTCTC
GGGAAGTGGTACAGGGATTGATTGATGAGTACAAAGCAGCTGAAGGGCCC
GATTATATCTCTTGGGGCCACCAGGGAGGGATAGGGAGTAGCGCGGCGGG
GGGGTTGCCTGTGTCGGCGGTGGAGCGGCAGCAGCAGCCACAGCAGCAGC
TACAACAACAACAGCCGCTGCAGGTGCCATCATCTGGATTCCAGCATCCG
CACCAGCCGCACTAAGGCTCCTACCTGCTCGAGCGACTCAACGATCACTT
CCCCAAAAAGCTCATTCAGACCTACTCCGTCTTCCCCAATTGGGATCAAA
CCCAAAGTGATGTGGTGGTGCAGCCATATAATTCCCTCCTTACGCTCAAG
CGCCTAACCTTGAACGCGGATTGCGTGGTGGTCCTGGATAACACGGCCCT
CAATCGCATTGCTGTGGACCGCCTGCGCATCACCAATCCTACTGTCAATC
AACTCAATTCCCTCGTTTCTACGATGCCGCACGAAATCATCACGCTGCAG
GTGGGCCAGTGCGGCAATCAGATCGGCAGCGAGTTTTGGAAGCAAATCTG
TGCGGAGCACGGCATCAGTCCCGATGGCATGCTTCAGGACTTCGCCACGG
AGGGGAACGACCGCAAGGACGTCTTCTTCTATCAGGCGGACGATGATCAC
TACATTCCCCGGGCCTTATTGATGGACTTAGAGCCGCGTGTCATAAATTC
GATTCTGAATTCGGAGTACCGCGGCTTGTACAACCAGGAGAATGTCTTCA
TGGCTAGCAATGGTGGCGGGGCGGGTAACAATTGGGCGTCAGGCCATCGG
CAGGCGGAGGAGTACCACGATCAGCTCATGGAGATGATCGATCGGGAGGC
GGATGGCAGTGACAGCCTGGAGGGGTTTGTTCTTTGTCACTCTATAGCTG
GTGGCACGGGCTCAGGGATGGTCATGGCTGCCTCCACCACCACCCTACGT
TACCCCGGGTACATGAACAATGACCTTATCGGGCTGGTCGCATCCCTCAT
CCCCACCCCTCGCTGCCATTTCCTCATGACGGGGTATACGCCCCTTGTGA
TCTCCGACGTGCAAACCTCCGCTGTGAGGAAAACAACCGTCTTGGACGTC
ATGCGTCGCCTGACCCAAACAAAAAATATCATGGTGTCTGCTTCTACGCG
CACGGGGTGTTATATTTCCATTTTGAATATCATTCAGGGAGACGTCGATC
CGACCCAAGTTCACAAGGCTTTGCAGCGAATCCGCGAGAGGAAATTAGTA
AATTTTATCCCGTGGGGCCCGGCGTCGATTCAGGTGGCTTTGTCAAGGAA
AAGTGCATATGTTGAGACAGCGCACAAAGTCTCGGGATTAATGTTGGCGA
ATCATACATGTATGGCTAGCTTGTTCCAGCGGTCGGTAAATCAATATGAT
AAGATTAGGAAGAGGAATGCCTTCGTCGAGAATTATCGAAAAGAGCCCAT
GTTTCAGGATTCCCTGGATGAGTTTGATTCGTCTCGGGAAGTGGTACAGG
GATTGATTGATGAGTACAAAGCAGCTGAAGGGCCCGATTATATCTCTTGG
GGCCACCAGGGAGGGATAGGGAGTAGCGCGGCGGGGGGGTTGCCTGTGTC
GGCGGTGGAGCGGCAGCAGCAGCCACAGCAGCAGCTACAACAACAACAGC
CGCTGCAGGTGCCATCATCTGGATTCCAGCATCCGCACCAGCCGCACTAA
GGCTCCTACCTGCTCGAGCGACTCAACGATCACTTCCCCAAAAAGCTCAT
TCAGACCTACTCCGTCTTCCCCAATTGGGATCAAACCCAAAGTGATGTGG
TGGTGCAGCCATATAATTCCCTCCTTACGCTCAAGCGCCTAACCTTGAAC
GCGGATTGCGTGGTGGTCCTGGATAACACGGCCCTCAATCGCATTGCTGT
GGACCGCCTGCGCATCACCAATCCTACTGTCAATCAACTCAATTCCCTCG
TTTCTACGATGCCGCACGAAATCATCACGCTGCAGGTGGGCCAGTGCGGC
AATCAGATCGGCAGCGAGTTTTGGAAGCAAATCTGTGCGGAGCACGGCAT
CAGTCCCGATGGCATGCTTCAGGACTTCGCCACGGAGGGGAACGACCGCA
AGGACGTCTTCTTCTATCAGGCGGACGATGATCACTACATTCCCCGGGCC
TTATTGATGGACTTAGAGCCGCGTGTCATAAATTCGATTCTGAATTCGGA
GTACCGCGGCTTGTACAACCAGGAGAATGTCTTCATGGCTAGCAATGGTG
GCGGGGCGGGTAACAATTGGGCGTCAGGCCATCGGCAGGCGGAGGAGTAC
CACGATCAGCTCATGGAGATGATCGATCGGGAGGCGGATGGCAGTGACAG
CCTGGAGGGGTTTGTTCTTTGTCACTCTATAGCTGGTGGCACGGGCTCAG
GGATG back to top
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