jgi.p|Nanoce1779_2|577117, mRNA_363 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|577117
Unique Name	mRNA_363
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	791
Alignment location	scaffold_3:904741..905890 +

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Properties


Property Name	Value
TranscriptId	577203
Track	FilteredModels2
ProteinId	577117

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:904741..905890 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577117	gene_363	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577117	mRNA_363-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_363	CDS_363	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:904741..905890+
coding sequence from alignment at scaffold_3:904741..905890+

mRNA sequence

>mRNA_363 ID=mRNA_363|Name=jgi.p|Nanoce1779_2|577117|organism=Nannochloropsis oceanica|type=mRNA|length=791bp
AATAGCTGGGTCCACGGGCCCAGCGACTGCTGCTAAGGCTGCTGCTCCTT
TCTCTTCCTCATTATTCTTCCCCTCCATCGGCACTGATCTCCGACTCCCA
TCCAATGGTATGAAGCCCTCCTCCTCCTCCTCCTCCTCGCCCGGCACGTG
CCTCGCCCTCAATGCCTGCTTTTTCAATTTCTCTTTCTTTAACCGGTCAA
TCTCCGCTTTGTCCAGTACCCCTCCTTGCTCTACTTCGGTTTCGTCCTCT
TGTTCCTCCCCCTCCTCCACTACTCCTTCTGGCAGCTCAAACGTCACCCG
TGTGCTCCTCTCCGTCTCTCTTGCCGCTTTAGTGCTCACTTGGAAAAGCT
GTCCCTTCTTCAATTCCGCAAGCTTCTCTTTGCTGTATTCGCCCCCTCCT
CCTTCTCCACTACCACCACCAACACCAGCGCCAATACCGGCCTCGGCTGC
ACGTTCATCTAAGTGCTGCTCCAGCGCTTTCCGCAAGGACTTCTTGCTAG
ACGACAGCGCCTTATTCTTCTTCTTTTTGCTTTTCAAAGCCTGTAATATT
CCGCCATCCTCCATCTCGTCGTCGTCGTCGTCAAAACTAAGGAGGGCTGC
GGCTGGCTTTTTGGAGGAGGGGACAGGGGCAGAGGAAGCTGCCGCAGCTT
CTTCCTTCTTCTTTGGCTTGCTTTTAGGCACTGCTGCGGCCGTCCGTCGT
GCCTCTGCATCTTCATCTTCTTCTGAAGACGACACTGCGGTTGTGCGGCT
CCGGAACTTTTTGGTCTTAAAGCTCATTGCGGCCGCACTGT

protein sequence of jgi.p|Nanoce1779_2|577117

>mRNA_363-protein ID=mRNA_363-protein|Name=jgi.p|Nanoce1779_2|577117|organism=Nannochloropsis oceanica|type=polypeptide|length=227bp
MKPSSSSSSSPGTCLALNACFFNFSFFNRSISALSSTPPCSTSVSSSCSS
PSSTTPSGSSNVTRVLLSVSLAALVLTWKSCPFFNSASFSLLYSPPPPSP
LPPPTPAPIPASAARSSKCCSSAFRKDFLLDDSALFFFFLLFKACNIPPS
SISSSSSSKLRRAAAGFLEEGTGAEEAAAASSFFFGLLLGTAAAVRRASA
SSSSSEDDTAVVRLRNFLVLKLIAAAL

mRNA from alignment at scaffold_3:904741..905890+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_363 ID=mRNA_363|Name=jgi.p|Nanoce1779_2|577117|organism=Nannochloropsis oceanica|type=mRNA|length=1150bp|location=Sequence derived from alignment at scaffold_3:904741..905890+ (Nannochloropsis oceanica)
AATAGCTGGGTCCACGGGCCCAGCGACTGCTGCTAAGGCTGCTGCTCCTT
TCTCTTCCTGTTTGTATGTAAACGTATGTGTACATATAGATAAGTTGAGT
GAGGATAAGAAGAAAGGGAAAATGGGAAACGATGGGAGGAAGTACCGAGT
TGGAAAGGGTGTCATTGCATTTTTGCTGTCAGGCAGAAATCTCTAGACGC
CATGCGAAGCACGCCGATTTGAACAATTGTGATGCGCACTCGTCCGCTAT
CTCATGAAATGTTGTAATCATGCAGCAATACCAATGACACCCTTCTTCAT
CCTCCTCCTCCTCTTCCCGCAGTGCACTTATCTATGCAACACAACTTTCC
TTGTGTAATCAATCATCACATGTTCTCTATTTCTCCCTTATTGCTCTCAC
CATTTCTCTTTCTTACCTCATTATTCTTCCCCTCCATCGGCACTGATCTC
CGACTCCCATCCAATGGTATGAAGCCCTCCTCCTCCTCCTCCTCCTCGCC
CGGCACGTGCCTCGCCCTCAATGCCTGCTTTTTCAATTTCTCTTTCTTTA
ACCGGTCAATCTCCGCTTTGTCCAGTACCCCTCCTTGCTCTACTTCGGTT
TCGTCCTCTTGTTCCTCCCCCTCCTCCACTACTCCTTCTGGCAGCTCAAA
CGTCACCCGTGTGCTCCTCTCCGTCTCTCTTGCCGCTTTAGTGCTCACTT
GGAAAAGCTGTCCCTTCTTCAATTCCGCAAGCTTCTCTTTGCTGTATTCG
CCCCCTCCTCCTTCTCCACTACCACCACCAACACCAGCGCCAATACCGGC
CTCGGCTGCACGTTCATCTAAGTGCTGCTCCAGCGCTTTCCGCAAGGACT
TCTTGCTAGACGACAGCGCCTTATTCTTCTTCTTTTTGCTTTTCAAAGCC
TGTAATATTCCGCCATCCTCCATCTCGTCGTCGTCGTCGTCAAAACTAAG
GAGGGCTGCGGCTGGCTTTTTGGAGGAGGGGACAGGGGCAGAGGAAGCTG
CCGCAGCTTCTTCCTTCTTCTTTGGCTTGCTTTTAGGCACTGCTGCGGCC
GTCCGTCGTGCCTCTGCATCTTCATCTTCTTCTGAAGACGACACTGCGGT
TGTGCGGCTCCGGAACTTTTTGGTCTTAAAGCTCATTGCGGCCGCACTGT

Coding sequence (CDS) from alignment at scaffold_3:904741..905890+

>mRNA_363 ID=mRNA_363|Name=jgi.p|Nanoce1779_2|577117|organism=Nannochloropsis oceanica|type=CDS|length=682bp|location=Sequence derived from alignment at scaffold_3:904741..905890+ (Nannochloropsis oceanica)
ATGAAGCCCTCCTCCTCCTCCTCCTCCTCGCCCGGCACGTGCCTCGCCCT
CAATGCCTGCTTTTTCAATTTCTCTTTCTTTAACCGGTCAATCTCCGCTT
TGTCCAGTACCCCTCCTTGCTCTACTTCGGTTTCGTCCTCTTGTTCCTCC
CCCTCCTCCACTACTCCTTCTGGCAGCTCAAACGTCACCCGTGTGCTCCT
CTCCGTCTCTCTTGCCGCTTTAGTGCTCACTTGGAAAAGCTGTCCCTTCT
TCAATTCCGCAAGCTTCTCTTTGCTGTATTCGCCCCCTCCTCCTTCTCCA
CTACCACCACCAACACCAGCGCCAATACCGGCCTCGGCTGCACGTTCATC
TAAGTGCTGCTCCAGCGCTTTCCGCAAGGACTTCTTGCTAGACGACAGCG
CCTTATTCTTCTTCTTTTTGCTTTTCAAAGCCTGTAATATTCCGCCATCC
TCCATCTCGTCGTCGTCGTCGTCAAAACTAAGGAGGGCTGCGGCTGGCTT
TTTGGAGGAGGGGACAGGGGCAGAGGAAGCTGCCGCAGCTTCTTCCTTCT
TCTTTGGCTTGCTTTTAGGCACTGCTGCGGCCGTCCGTCGTGCCTCTGCA
TCTTCATCTTCTTCTGAAGACGACACTGCGGTTGTGCGGCTCCGGAACTT
TTTGGTCTTAAAGCTCATTGCGGCCGCACTGT

Synonyms

Publications