jgi.p|Nanoce1779_2|605901, mRNA_9263 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|605901
Unique NamemRNA_9263
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2053
Alignment locationscaffold_33:131904..133956 +

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Properties
Property NameValue
TranscriptId605987
TrackFilteredModels2
ProteinId605901
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_33supercontigscaffold_33:131904..133956 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605901gene_9263Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605901mRNA_9263-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9263CDS_9263Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9263 ID=mRNA_9263|Name=jgi.p|Nanoce1779_2|605901|organism=Nannochloropsis oceanica|type=mRNA|length=2053bp
GCACAGAGGCACCTACCCCTGCATTAAAAAAAGCATCGAGGTAATAGGGA
GACATCATTATAAAGGAGAAATAATGGCGGACGACACGGCCAGCTTCCAA
GATATGAGTGAGACGCAGCTCCGGCAATGGGTGGAAGCCCACCCTGAACA
AGTAAATGACAAGAACGGTGGAAAATTCACTCCCTTATGCGTTGCTGTTT
CAATCTTGAGCAACCTGCCACTGATTCTATGGTTGATCGATGAGAAAGGG
GCGGACGTGAACGTGCGCACCAGGACGGGCTACACGCCTCTCCAACTGGC
CCGGTCTCTTGACATCCTCGCTGCCTTGCTGGAGCGAGGAGCCAACCCTG
TCCTGCAAAATTTACTCGGGCAATCCGCTCTCATCCACCAAGCAGCTTCT
GGGCATGTCGATAATGTGGCACGTCTACTGCAAGACTCCCGGGTCCAAGC
CACAGTAAATCTTAAGACCCCTTTTGGTTGGACAGCCCTCCACCACGCCT
GTAGCCACATATACGAAACACCAGCCACCGCTATCGTCCATCTTCTCCTC
CAAGCAGGTGCCAATCCTGCCCCCCTTGGCGATGAAGGGAAGTCCTCTTT
GAGTTTGCTTCGACAGAATCGTCCCTCCCACCACAGCACCATCGCCCTTC
TTGAGCAAGCCCCTGACGCAGAAAAGGCTTCCCTTCTTGTGAAAGCTCGA
CGCCTTACCGTCGGCGCCTCCGTCTCCACTTCTGCCTTAGCACGTCCCTA
CCTGCAGGGTCGGATGACCCAAAGACAGTCTTTCCCTCGGGTAGACCTAA
TGCCAATGCGCCGCAAGAAGAAGACCGATGATCATCGCAAGTTTAGTGGT
ATGCTGGGGTTTCTCTTGGGCAGCCAGGGCGGATTTAATGGCGAGGGAAT
GCCGCGGGACGTATTTAGGATGGTAATGGACTTTGTAATGCCAAAATGGG
ACCCGCTGAGACGTGGAATTGTGGGAGAAGGGGGAGAGCTCTTGGACGTA
AGGAGCCCGTGATGGCAATTGTATAATAGTAGCAGCGGCTGTAGCCGGGG
TACCAAATGCCCGTTAACAGCAACACCAATGTCAGCACTAGCAGCAGCAC
TAGCAGCAGCAGCAGCAGAACCAGCACCGCTATCAATCACAACCACTATC
AGTGTCTCCAAAAAGGTGTCTGAGGCGTAGAAGGGTGCCGAGAAGGTCCC
TCCTGAAACCTCGTTATGTGGGCACCAGTACGGCTACCATACAACTCTCT
CTTTAGCCGTCAGTCAGGTCATAGAGCCAGCCCTTTACCCGGCGAAACCG
CCATCGGCAGGTCACAAGAAGGCTGCCAGCATATCCCGCCAATTTATCAT
CAAGATAATGCTCACCATTGGGATGATAGCATACGCAGAGTTGTGATTGC
CTTTGTCATGCTAGCCTTGGAATCGTTGAAGGAAGAGAGAGCTTGAAAAA
GAAAGCGATAATAGCAGGAGCAGCAGGAGCAGTAGCACCAGCATGGAAAA
GCTTCAGTAGATTAGGATTAGCAATAACAGCAAAAGCATCACTTATAGAA
GTACGAGATCAGGTAAATTGACGTAGCTTCGGAGTGCATGGAAGATCTCA
TGGTTCATTTCTTGATTTTTTAGCCCTAGAGTGCAAATATATTCTCAAGC
AGGCGCTTAAAATGGATTTATCAAAAATGGACCGACAAGAAGACAATTTG
TATTCCTTCAACAATAATCACGACCCCACAGACATATTTTGATGTTTCAC
GGCCAGAGATGAAGTAATTATGACGCCAGCAAGTGGACTCACTGCCTTGT
ATGCTGCCGTCACAGGCTTAAATGTCTGTTACTGGCTTAATGACTGACAG
AGAGATATGCAGACTTAATCGGCAAAAGCGAAAGCGGATTTCTGCGAACT
TAATGGAAAATGGAAATGGAGAAGGGAGAAGTATCAAGTTTTAGAAATCT
GATGCGCGGTGAGATAGTGGAAGAGCCATAATTATAGCTCTCGCGACTTT
GACCTTAAGTTTTTCACTCTGTATAGACGTATGACAAATCAGCTCATTCG
GAC
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protein sequence of jgi.p|Nanoce1779_2|605901

>mRNA_9263-protein ID=mRNA_9263-protein|Name=jgi.p|Nanoce1779_2|605901|organism=Nannochloropsis oceanica|type=polypeptide|length=313bp
MADDTASFQDMSETQLRQWVEAHPEQVNDKNGGKFTPLCVAVSILSNLPL
ILWLIDEKGADVNVRTRTGYTPLQLARSLDILAALLERGANPVLQNLLGQ
SALIHQAASGHVDNVARLLQDSRVQATVNLKTPFGWTALHHACSHIYETP
ATAIVHLLLQAGANPAPLGDEGKSSLSLLRQNRPSHHSTIALLEQAPDAE
KASLLVKARRLTVGASVSTSALARPYLQGRMTQRQSFPRVDLMPMRRKKK
TDDHRKFSGMLGFLLGSQGGFNGEGMPRDVFRMVMDFVMPKWDPLRRGIV
GEGGELLDVRSP*
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mRNA from alignment at scaffold_33:131904..133956+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9263 ID=mRNA_9263|Name=jgi.p|Nanoce1779_2|605901|organism=Nannochloropsis oceanica|type=mRNA|length=2053bp|location=Sequence derived from alignment at scaffold_33:131904..133956+ (Nannochloropsis oceanica)
GCACAGAGGCACCTACCCCTGCATTAAAAAAAGCATCGAGGTAATAGGGA GACATCATTATAAAGGAGAAATAATGGCGGACGACACGGCCAGCTTCCAA GATATGAGTGAGACGCAGCTCCGGCAATGGGTGGAAGCCCACCCTGAACA AGTAAATGACAAGAACGGTGGAAAATTCACTCCCTTATGCGTTGCTGTTT CAATCTTGAGCAACCTGCCACTGATTCTATGGTTGATCGATGAGAAAGGG GCGGACGTGAACGTGCGCACCAGGACGGGCTACACGCCTCTCCAACTGGC CCGGTCTCTTGACATCCTCGCTGCCTTGCTGGAGCGAGGAGCCAACCCTG TCCTGCAAAATTTACTCGGGCAATCCGCTCTCATCCACCAAGCAGCTTCT GGGCATGTCGATAATGTGGCACGTCTACTGCAAGACTCCCGGGTCCAAGC CACAGTAAATCTTAAGACCCCTTTTGGTTGGACAGCCCTCCACCACGCCT GTAGCCACATATACGAAACACCAGCCACCGCTATCGTCCATCTTCTCCTC CAAGCAGGTGCCAATCCTGCCCCCCTTGGCGATGAAGGGAAGTCCTCTTT GAGTTTGCTTCGACAGAATCGTCCCTCCCACCACAGCACCATCGCCCTTC TTGAGCAAGCCCCTGACGCAGAAAAGGCTTCCCTTCTTGTGAAAGCTCGA CGCCTTACCGTCGGCGCCTCCGTCTCCACTTCTGCCTTAGCACGTCCCTA CCTGCAGGGTCGGATGACCCAAAGACAGTCTTTCCCTCGGGTAGACCTAA TGCCAATGCGCCGCAAGAAGAAGACCGATGATCATCGCAAGTTTAGTGGT ATGCTGGGGTTTCTCTTGGGCAGCCAGGGCGGATTTAATGGCGAGGGAAT GCCGCGGGACGTATTTAGGATGGTAATGGACTTTGTAATGCCAAAATGGG ACCCGCTGAGACGTGGAATTGTGGGAGAAGGGGGAGAGCTCTTGGACGTA AGGAGCCCGTGATGGCAATTGTATAATAGTAGCAGCGGCTGTAGCCGGGG TACCAAATGCCCGTTAACAGCAACACCAATGTCAGCACTAGCAGCAGCAC TAGCAGCAGCAGCAGCAGAACCAGCACCGCTATCAATCACAACCACTATC AGTGTCTCCAAAAAGGTGTCTGAGGCGTAGAAGGGTGCCGAGAAGGTCCC TCCTGAAACCTCGTTATGTGGGCACCAGTACGGCTACCATACAACTCTCT CTTTAGCCGTCAGTCAGGTCATAGAGCCAGCCCTTTACCCGGCGAAACCG CCATCGGCAGGTCACAAGAAGGCTGCCAGCATATCCCGCCAATTTATCAT CAAGATAATGCTCACCATTGGGATGATAGCATACGCAGAGTTGTGATTGC CTTTGTCATGCTAGCCTTGGAATCGTTGAAGGAAGAGAGAGCTTGAAAAA GAAAGCGATAATAGCAGGAGCAGCAGGAGCAGTAGCACCAGCATGGAAAA GCTTCAGTAGATTAGGATTAGCAATAACAGCAAAAGCATCACTTATAGAA GTACGAGATCAGGTAAATTGACGTAGCTTCGGAGTGCATGGAAGATCTCA TGGTTCATTTCTTGATTTTTTAGCCCTAGAGTGCAAATATATTCTCAAGC AGGCGCTTAAAATGGATTTATCAAAAATGGACCGACAAGAAGACAATTTG TATTCCTTCAACAATAATCACGACCCCACAGACATATTTTGATGTTTCAC GGCCAGAGATGAAGTAATTATGACGCCAGCAAGTGGACTCACTGCCTTGT ATGCTGCCGTCACAGGCTTAAATGTCTGTTACTGGCTTAATGACTGACAG AGAGATATGCAGACTTAATCGGCAAAAGCGAAAGCGGATTTCTGCGAACT TAATGGAAAATGGAAATGGAGAAGGGAGAAGTATCAAGTTTTAGAAATCT GATGCGCGGTGAGATAGTGGAAGAGCCATAATTATAGCTCTCGCGACTTT GACCTTAAGTTTTTCACTCTGTATAGACGTATGACAAATCAGCTCATTCG GAC
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Coding sequence (CDS) from alignment at scaffold_33:131904..133956+

>mRNA_9263 ID=mRNA_9263|Name=jgi.p|Nanoce1779_2|605901|organism=Nannochloropsis oceanica|type=CDS|length=939bp|location=Sequence derived from alignment at scaffold_33:131904..133956+ (Nannochloropsis oceanica)
ATGGCGGACGACACGGCCAGCTTCCAAGATATGAGTGAGACGCAGCTCCG
GCAATGGGTGGAAGCCCACCCTGAACAAGTAAATGACAAGAACGGTGGAA
AATTCACTCCCTTATGCGTTGCTGTTTCAATCTTGAGCAACCTGCCACTG
ATTCTATGGTTGATCGATGAGAAAGGGGCGGACGTGAACGTGCGCACCAG
GACGGGCTACACGCCTCTCCAACTGGCCCGGTCTCTTGACATCCTCGCTG
CCTTGCTGGAGCGAGGAGCCAACCCTGTCCTGCAAAATTTACTCGGGCAA
TCCGCTCTCATCCACCAAGCAGCTTCTGGGCATGTCGATAATGTGGCACG
TCTACTGCAAGACTCCCGGGTCCAAGCCACAGTAAATCTTAAGACCCCTT
TTGGTTGGACAGCCCTCCACCACGCCTGTAGCCACATATACGAAACACCA
GCCACCGCTATCGTCCATCTTCTCCTCCAAGCAGGTGCCAATCCTGCCCC
CCTTGGCGATGAAGGGAAGTCCTCTTTGAGTTTGCTTCGACAGAATCGTC
CCTCCCACCACAGCACCATCGCCCTTCTTGAGCAAGCCCCTGACGCAGAA
AAGGCTTCCCTTCTTGTGAAAGCTCGACGCCTTACCGTCGGCGCCTCCGT
CTCCACTTCTGCCTTAGCACGTCCCTACCTGCAGGGTCGGATGACCCAAA
GACAGTCTTTCCCTCGGGTAGACCTAATGCCAATGCGCCGCAAGAAGAAG
ACCGATGATCATCGCAAGTTTAGTGGTATGCTGGGGTTTCTCTTGGGCAG
CCAGGGCGGATTTAATGGCGAGGGAATGCCGCGGGACGTATTTAGGATGG
TAATGGACTTTGTAATGCCAAAATGGGACCCGCTGAGACGTGGAATTGTG
GGAGAAGGGGGAGAGCTCTTGGACGTAAGGAGCCCGTGA
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Synonyms
Publications