jgi.p|Nanoce1779_2|605901, mRNA_9263 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|605901
Unique Name	mRNA_9263
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2053
Alignment location	scaffold_33:131904..133956 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	605987
Track	FilteredModels2
ProteinId	605901

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_33	supercontig	scaffold_33:131904..133956 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|605901	gene_9263	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|605901	mRNA_9263-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9263	CDS_9263	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_33:131904..133956+
coding sequence from alignment at scaffold_33:131904..133956+

mRNA sequence

>mRNA_9263 ID=mRNA_9263|Name=jgi.p|Nanoce1779_2|605901|organism=Nannochloropsis oceanica|type=mRNA|length=2053bp
GCACAGAGGCACCTACCCCTGCATTAAAAAAAGCATCGAGGTAATAGGGA
GACATCATTATAAAGGAGAAATAATGGCGGACGACACGGCCAGCTTCCAA
GATATGAGTGAGACGCAGCTCCGGCAATGGGTGGAAGCCCACCCTGAACA
AGTAAATGACAAGAACGGTGGAAAATTCACTCCCTTATGCGTTGCTGTTT
CAATCTTGAGCAACCTGCCACTGATTCTATGGTTGATCGATGAGAAAGGG
GCGGACGTGAACGTGCGCACCAGGACGGGCTACACGCCTCTCCAACTGGC
CCGGTCTCTTGACATCCTCGCTGCCTTGCTGGAGCGAGGAGCCAACCCTG
TCCTGCAAAATTTACTCGGGCAATCCGCTCTCATCCACCAAGCAGCTTCT
GGGCATGTCGATAATGTGGCACGTCTACTGCAAGACTCCCGGGTCCAAGC
CACAGTAAATCTTAAGACCCCTTTTGGTTGGACAGCCCTCCACCACGCCT
GTAGCCACATATACGAAACACCAGCCACCGCTATCGTCCATCTTCTCCTC
CAAGCAGGTGCCAATCCTGCCCCCCTTGGCGATGAAGGGAAGTCCTCTTT
GAGTTTGCTTCGACAGAATCGTCCCTCCCACCACAGCACCATCGCCCTTC
TTGAGCAAGCCCCTGACGCAGAAAAGGCTTCCCTTCTTGTGAAAGCTCGA
CGCCTTACCGTCGGCGCCTCCGTCTCCACTTCTGCCTTAGCACGTCCCTA
CCTGCAGGGTCGGATGACCCAAAGACAGTCTTTCCCTCGGGTAGACCTAA
TGCCAATGCGCCGCAAGAAGAAGACCGATGATCATCGCAAGTTTAGTGGT
ATGCTGGGGTTTCTCTTGGGCAGCCAGGGCGGATTTAATGGCGAGGGAAT
GCCGCGGGACGTATTTAGGATGGTAATGGACTTTGTAATGCCAAAATGGG
ACCCGCTGAGACGTGGAATTGTGGGAGAAGGGGGAGAGCTCTTGGACGTA
AGGAGCCCGTGATGGCAATTGTATAATAGTAGCAGCGGCTGTAGCCGGGG
TACCAAATGCCCGTTAACAGCAACACCAATGTCAGCACTAGCAGCAGCAC
TAGCAGCAGCAGCAGCAGAACCAGCACCGCTATCAATCACAACCACTATC
AGTGTCTCCAAAAAGGTGTCTGAGGCGTAGAAGGGTGCCGAGAAGGTCCC
TCCTGAAACCTCGTTATGTGGGCACCAGTACGGCTACCATACAACTCTCT
CTTTAGCCGTCAGTCAGGTCATAGAGCCAGCCCTTTACCCGGCGAAACCG
CCATCGGCAGGTCACAAGAAGGCTGCCAGCATATCCCGCCAATTTATCAT
CAAGATAATGCTCACCATTGGGATGATAGCATACGCAGAGTTGTGATTGC
CTTTGTCATGCTAGCCTTGGAATCGTTGAAGGAAGAGAGAGCTTGAAAAA
GAAAGCGATAATAGCAGGAGCAGCAGGAGCAGTAGCACCAGCATGGAAAA
GCTTCAGTAGATTAGGATTAGCAATAACAGCAAAAGCATCACTTATAGAA
GTACGAGATCAGGTAAATTGACGTAGCTTCGGAGTGCATGGAAGATCTCA
TGGTTCATTTCTTGATTTTTTAGCCCTAGAGTGCAAATATATTCTCAAGC
AGGCGCTTAAAATGGATTTATCAAAAATGGACCGACAAGAAGACAATTTG
TATTCCTTCAACAATAATCACGACCCCACAGACATATTTTGATGTTTCAC
GGCCAGAGATGAAGTAATTATGACGCCAGCAAGTGGACTCACTGCCTTGT
ATGCTGCCGTCACAGGCTTAAATGTCTGTTACTGGCTTAATGACTGACAG
AGAGATATGCAGACTTAATCGGCAAAAGCGAAAGCGGATTTCTGCGAACT
TAATGGAAAATGGAAATGGAGAAGGGAGAAGTATCAAGTTTTAGAAATCT
GATGCGCGGTGAGATAGTGGAAGAGCCATAATTATAGCTCTCGCGACTTT
GACCTTAAGTTTTTCACTCTGTATAGACGTATGACAAATCAGCTCATTCG
GAC

protein sequence of jgi.p|Nanoce1779_2|605901

>mRNA_9263-protein ID=mRNA_9263-protein|Name=jgi.p|Nanoce1779_2|605901|organism=Nannochloropsis oceanica|type=polypeptide|length=313bp
MADDTASFQDMSETQLRQWVEAHPEQVNDKNGGKFTPLCVAVSILSNLPL
ILWLIDEKGADVNVRTRTGYTPLQLARSLDILAALLERGANPVLQNLLGQ
SALIHQAASGHVDNVARLLQDSRVQATVNLKTPFGWTALHHACSHIYETP
ATAIVHLLLQAGANPAPLGDEGKSSLSLLRQNRPSHHSTIALLEQAPDAE
KASLLVKARRLTVGASVSTSALARPYLQGRMTQRQSFPRVDLMPMRRKKK
TDDHRKFSGMLGFLLGSQGGFNGEGMPRDVFRMVMDFVMPKWDPLRRGIV
GEGGELLDVRSP*

mRNA from alignment at scaffold_33:131904..133956+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9263 ID=mRNA_9263|Name=jgi.p|Nanoce1779_2|605901|organism=Nannochloropsis oceanica|type=mRNA|length=2053bp|location=Sequence derived from alignment at scaffold_33:131904..133956+ (Nannochloropsis oceanica)
GCACAGAGGCACCTACCCCTGCATTAAAAAAAGCATCGAGGTAATAGGGA
GACATCATTATAAAGGAGAAATAATGGCGGACGACACGGCCAGCTTCCAA
GATATGAGTGAGACGCAGCTCCGGCAATGGGTGGAAGCCCACCCTGAACA
AGTAAATGACAAGAACGGTGGAAAATTCACTCCCTTATGCGTTGCTGTTT
CAATCTTGAGCAACCTGCCACTGATTCTATGGTTGATCGATGAGAAAGGG
GCGGACGTGAACGTGCGCACCAGGACGGGCTACACGCCTCTCCAACTGGC
CCGGTCTCTTGACATCCTCGCTGCCTTGCTGGAGCGAGGAGCCAACCCTG
TCCTGCAAAATTTACTCGGGCAATCCGCTCTCATCCACCAAGCAGCTTCT
GGGCATGTCGATAATGTGGCACGTCTACTGCAAGACTCCCGGGTCCAAGC
CACAGTAAATCTTAAGACCCCTTTTGGTTGGACAGCCCTCCACCACGCCT
GTAGCCACATATACGAAACACCAGCCACCGCTATCGTCCATCTTCTCCTC
CAAGCAGGTGCCAATCCTGCCCCCCTTGGCGATGAAGGGAAGTCCTCTTT
GAGTTTGCTTCGACAGAATCGTCCCTCCCACCACAGCACCATCGCCCTTC
TTGAGCAAGCCCCTGACGCAGAAAAGGCTTCCCTTCTTGTGAAAGCTCGA
CGCCTTACCGTCGGCGCCTCCGTCTCCACTTCTGCCTTAGCACGTCCCTA
CCTGCAGGGTCGGATGACCCAAAGACAGTCTTTCCCTCGGGTAGACCTAA
TGCCAATGCGCCGCAAGAAGAAGACCGATGATCATCGCAAGTTTAGTGGT
ATGCTGGGGTTTCTCTTGGGCAGCCAGGGCGGATTTAATGGCGAGGGAAT
GCCGCGGGACGTATTTAGGATGGTAATGGACTTTGTAATGCCAAAATGGG
ACCCGCTGAGACGTGGAATTGTGGGAGAAGGGGGAGAGCTCTTGGACGTA
AGGAGCCCGTGATGGCAATTGTATAATAGTAGCAGCGGCTGTAGCCGGGG
TACCAAATGCCCGTTAACAGCAACACCAATGTCAGCACTAGCAGCAGCAC
TAGCAGCAGCAGCAGCAGAACCAGCACCGCTATCAATCACAACCACTATC
AGTGTCTCCAAAAAGGTGTCTGAGGCGTAGAAGGGTGCCGAGAAGGTCCC
TCCTGAAACCTCGTTATGTGGGCACCAGTACGGCTACCATACAACTCTCT
CTTTAGCCGTCAGTCAGGTCATAGAGCCAGCCCTTTACCCGGCGAAACCG
CCATCGGCAGGTCACAAGAAGGCTGCCAGCATATCCCGCCAATTTATCAT
CAAGATAATGCTCACCATTGGGATGATAGCATACGCAGAGTTGTGATTGC
CTTTGTCATGCTAGCCTTGGAATCGTTGAAGGAAGAGAGAGCTTGAAAAA
GAAAGCGATAATAGCAGGAGCAGCAGGAGCAGTAGCACCAGCATGGAAAA
GCTTCAGTAGATTAGGATTAGCAATAACAGCAAAAGCATCACTTATAGAA
GTACGAGATCAGGTAAATTGACGTAGCTTCGGAGTGCATGGAAGATCTCA
TGGTTCATTTCTTGATTTTTTAGCCCTAGAGTGCAAATATATTCTCAAGC
AGGCGCTTAAAATGGATTTATCAAAAATGGACCGACAAGAAGACAATTTG
TATTCCTTCAACAATAATCACGACCCCACAGACATATTTTGATGTTTCAC
GGCCAGAGATGAAGTAATTATGACGCCAGCAAGTGGACTCACTGCCTTGT
ATGCTGCCGTCACAGGCTTAAATGTCTGTTACTGGCTTAATGACTGACAG
AGAGATATGCAGACTTAATCGGCAAAAGCGAAAGCGGATTTCTGCGAACT
TAATGGAAAATGGAAATGGAGAAGGGAGAAGTATCAAGTTTTAGAAATCT
GATGCGCGGTGAGATAGTGGAAGAGCCATAATTATAGCTCTCGCGACTTT
GACCTTAAGTTTTTCACTCTGTATAGACGTATGACAAATCAGCTCATTCG
GAC

Coding sequence (CDS) from alignment at scaffold_33:131904..133956+

>mRNA_9263 ID=mRNA_9263|Name=jgi.p|Nanoce1779_2|605901|organism=Nannochloropsis oceanica|type=CDS|length=939bp|location=Sequence derived from alignment at scaffold_33:131904..133956+ (Nannochloropsis oceanica)
ATGGCGGACGACACGGCCAGCTTCCAAGATATGAGTGAGACGCAGCTCCG
GCAATGGGTGGAAGCCCACCCTGAACAAGTAAATGACAAGAACGGTGGAA
AATTCACTCCCTTATGCGTTGCTGTTTCAATCTTGAGCAACCTGCCACTG
ATTCTATGGTTGATCGATGAGAAAGGGGCGGACGTGAACGTGCGCACCAG
GACGGGCTACACGCCTCTCCAACTGGCCCGGTCTCTTGACATCCTCGCTG
CCTTGCTGGAGCGAGGAGCCAACCCTGTCCTGCAAAATTTACTCGGGCAA
TCCGCTCTCATCCACCAAGCAGCTTCTGGGCATGTCGATAATGTGGCACG
TCTACTGCAAGACTCCCGGGTCCAAGCCACAGTAAATCTTAAGACCCCTT
TTGGTTGGACAGCCCTCCACCACGCCTGTAGCCACATATACGAAACACCA
GCCACCGCTATCGTCCATCTTCTCCTCCAAGCAGGTGCCAATCCTGCCCC
CCTTGGCGATGAAGGGAAGTCCTCTTTGAGTTTGCTTCGACAGAATCGTC
CCTCCCACCACAGCACCATCGCCCTTCTTGAGCAAGCCCCTGACGCAGAA
AAGGCTTCCCTTCTTGTGAAAGCTCGACGCCTTACCGTCGGCGCCTCCGT
CTCCACTTCTGCCTTAGCACGTCCCTACCTGCAGGGTCGGATGACCCAAA
GACAGTCTTTCCCTCGGGTAGACCTAATGCCAATGCGCCGCAAGAAGAAG
ACCGATGATCATCGCAAGTTTAGTGGTATGCTGGGGTTTCTCTTGGGCAG
CCAGGGCGGATTTAATGGCGAGGGAATGCCGCGGGACGTATTTAGGATGG
TAATGGACTTTGTAATGCCAAAATGGGACCCGCTGAGACGTGGAATTGTG
GGAGAAGGGGGAGAGCTCTTGGACGTAAGGAGCCCGTGA

Synonyms

Publications