jgi.p|Nanoce1779_2|267110, mRNA_9452 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|267110
Unique Name	mRNA_9452
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2028
Alignment location	scaffold_34:6467..9468 -

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Properties


Property Name	Value
TranscriptId	267196
Track	FilteredModels2
ProteinId	267110

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_34	supercontig	scaffold_34:6467..9468 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|267110	gene_9452	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|267110	mRNA_9452-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9452	CDS_9452	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_34:6467..9468-
coding sequence from alignment at scaffold_34:6467..9468-

mRNA sequence

>mRNA_9452 ID=mRNA_9452|Name=jgi.p|Nanoce1779_2|267110|organism=Nannochloropsis oceanica|type=mRNA|length=2028bp
CCAGCCAACCTCCTCAATCCTCCCTCTCTCCCTCCCTCTCACCGCAGTCA
CTCACACAAACTATCCCCGTACATCAATGTACAGGCCGCAGAGGTTGTTG
GCCTCCTGTGCCCTCCCTCCAGTACTTCCGCCTCTCTTTTCTTCTCCGTC
ATGCAGTATCGCTACTCCTCTTCCTACTCCTCCGCGTACCGTGGCTCCTC
GTCCTCCTCGTCCCGCATACCTGCTCCTGCCCATCGCGCCAACGCAAGCA
GCAGCAGCAGCGTCTCCCTGGATAGTATCCTGCGGTATAGTTGCACAGCG
ACGGGGGGGGGCAGAGGCAGCAGCAGTAATATTAGCAACAACAGCAGCAA
TAATAATAACAACGGCCGGGTGAGAGGCCTCCCTCTCCCTCACTCCCCCT
ACAACCGACAACAGCAGGAAAAGCAATCACAGCGCTCACTTTACGATCAC
TTTCAACAACAACAACAACTACATCGTCAATGGTCTACCGCCGATTTCCC
AGCGCCAGCTGCACCCCGTCCTCCTCCATCTCATCCACCACCGTACTACT
CGAATGAAGGAGGAGGAGGAGGAGGTGGAGGAAGAGGAGGAGGTGGGGGA
GACTGGACTGGTCTTGTCTCTGCTGCTGCTGCTGCTCCTCCTCCTTACAC
ATCTCTTATCATCGGCAATACACCTAGCCAACCTTCGCAACACTCCTATT
CGCAGTCCCAGCATACCCACCTCCAGCAGCAACAGCAGCAGCAGCGGCAG
GAGGGTGGGAGGGGAGGAAAGGAGGGAGGTGTGGATGACTTGGTAGCAGC
AAAGACACAGCAGCAAATGCTGGACTCACTACTCACACTTATTAAAGACG
TGCATGAAGTCAAGCGCCAGCTACAGGAGCAGCAGGAGGAGCAGGAGCAG
CACAACCACCATCAGGCAGTCCCGGCGAAGGCCTTTCCCCCCTCTCCTCC
ACCGTCTCCAGATCGACACCAGCAGCGACAGCAGCAGCATCAGCAGCATC
AGCAGCAGCAGCAGCAGCAAAAACAGCGAAAAGAACAAGAGCAACATCTA
ACAGACATGCCCGCCCGTCTCAGTAAACTCGCGGCAGAACTCTCCTCCGT
CCAGGAGCAGCAACGAGTGGCAGCGGCCACAGCTGCAGCAGCCGCAGCTG
CTGCAATAGAGAGGGAACAGCAGGTAGAGGAGGAGGTGAGGATTCTAAAG
GTGAAGGTGGAAGGTATGGCGAATGAATTCAGGCTGCTCCGATTGGCGAG
GGACGGGAAAGAGGAGGGAGGGAGGGAGGGAGCTGTGGAAGGAGGGGGAA
TTACTGCCGAGAGGGGAAAGGAGGGAGGGAGGGAGGGAGGAGTCCTCCAT
GGACCATACCCTCCTTCTGCCATAAAGCTCTTCTCGCGACCTCCTTTTCC
TCCTCCTCCACTGCCTGTTCGTGTTCTTCACCGTCGTCAACAGCAGCAGC
AGCAGCAGCAGCTTGATAAGAAAGAGGAGGAAGAGAAAGAGAAAGAGAAA
GTGCTTTGCGCTCAAATAGCTGAATTTGATGAAACGAAGAAGGAGGAAAA
GAAGAAGAACGAGGTATCGAAGGAGGGAGAGGCGGAGGCAGAGGCAGAGG
AAGAGGAAGAAGAGAGTCCTGATTTGCTTGCGGGGAGGAAACATTTCTCT
TATCAACACCGAGATGGGGATGAGGAGGAGGAGAAAGAAGAAGAACAGGA
ACCGAATGAAAGGGTAGAGGGAAGGAATAGAATTCTACAGAAATGTGCAT
ATGTGCGTTTGTGTGAATGTGTGAGTGTGTGTTTGTTCCTCTGTGTGTGT
GTGTGTGGCTCTGTCGGGATGAGAAGAGGTAGAGGGAAGGAGGAATGTGC
CATGAGAATGAAAAGAAGGGAATACAATGAAATGAACAGATGCTGAGTGA
CATTTACATAAATCCTGTGTGTACATAAATTCTGTCTATATACATATGAG
AAAAAGGAGGGATAAAAGGACGCCAAAACAGGCAATGAAAACGAGAGGGT
GACGCAACAGCAAAAAGCAGGCAAGGCG

protein sequence of jgi.p|Nanoce1779_2|267110

>mRNA_9452-protein ID=mRNA_9452-protein|Name=jgi.p|Nanoce1779_2|267110|organism=Nannochloropsis oceanica|type=polypeptide|length=582bp
MQYRYSSSYSSAYRGSSSSSSRIPAPAHRANASSSSSVSLDSILRYSCTA
TGGGRGSSSNISNNSSNNNNNGRVRGLPLPHSPYNRQQQEKQSQRSLYDH
FQQQQQLHRQWSTADFPAPAAPRPPPSHPPPYYSNEGGGGGGGGRGGGGG
DWTGLVSAAAAAPPPYTSLIIGNTPSQPSQHSYSQSQHTHLQQQQQQQRQ
EGGRGGKEGGVDDLVAAKTQQQMLDSLLTLIKDVHEVKRQLQEQQEEQEQ
HNHHQAVPAKAFPPSPPPSPDRHQQRQQQHQQHQQQQQQQKQRKEQEQHL
TDMPARLSKLAAELSSVQEQQRVAAATAAAAAAAAIEREQQVEEEVRILK
VKVEGMANEFRLLRLARDGKEEGGREGAVEGGGITAERGKEGGREGGVLH
GPYPPSAIKLFSRPPFPPPPLPVRVLHRRQQQQQQQQLDKKEEEEKEKEK
VLCAQIAEFDETKKEEKKKNEVSKEGEAEAEAEEEEEESPDLLAGRKHFS
YQHRDGDEEEEKEEEQEPNERVEGRNRILQKCAYVRLCECVSVCLFLCVC
VCGSVGMRRGRGKEECAMRMKRREYNEMNRC*

mRNA from alignment at scaffold_34:6467..9468-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9452 ID=mRNA_9452|Name=jgi.p|Nanoce1779_2|267110|organism=Nannochloropsis oceanica|type=mRNA|length=3002bp|location=Sequence derived from alignment at scaffold_34:6467..9468- (Nannochloropsis oceanica)
CCAGCCAACCTCCTCAATCCTCCCTCTCTCCCTCCCTCTCACCGCAGTCA
CTCACACAAACTATCCCCGTACATCAATGTACAGGCCGCAGAGGTTGTTG
GCCTCCTGTGCCCTCCCTCCAGTACTTCCGCCTCTCTTTTCTTCTCCGTC
ATGCAGTATCGCTACTCCTCTTCCTACTCCTCCGCGTACCGTGGCTCCTC
GTCCTCCTCGTCCCGCATACCTGCTCCTGCCCATCGCGCCAACGCAAGCA
GCAGCAGCAGCGTCTCCCTGGATAGTATCCTGCGGTATAGTTGCACAGCG
ACGGGGGGGGGCAGAGGCAGCAGCAGTAATATTAGCAACAACAGCAGCAA
TAATAATAACAACGGCCGGGTGAGAGGCCTCCCTCTCCCTCACTCCCCCT
ACAACCGACAACAGCAGGAAAAGCAATCACAGCGCTCACTTTACGATCAC
TTTCAACAACAACAACAACTACATCGTCAATGGTCTACCGCCGATTTCCC
AGCGCCAGCTGCACCCCGTCCTCCTCCATCTCATCCACCACCGTACTACT
CGAATGAAGGAGGAGGAGGAGGAGGTGGAGGAAGAGGAGGAGGTGGGGGA
GACTGGACTGGTCTTGTCTCTGCTGCTGCTGCTGCTCCTCCTCCTTACAC
ATCTCTTATCATCGGCAATACACCTAGCCAACCTTCGCAACACTCCTATT
CGCAGTCCCAGCATACCCACCTCCAGCAGCAACAGCAGCAGCAGCGGCAG
GAGGGTGGGAGGGGAGGAAAGGAGGGAGGTGTGGATGACTTGGTAGCAGC
AAAGACACAGCAGCAAATGCTGGACTCACTACTCACACTTATTAAAGACG
TGCATGAAGTCAAGCGCCAGCTACAGGAGCAGCAGGAGGAGCAGGAGCAG
CACAACCACCATCAGGCAGTCCCGGCGAAGGCCTTTCCCCCCTCTCCTCC
ACCGTCTCCAGATCGACACCAGCAGCGACAGCAGCAGCATCAGCAGCATC
AGCAGCAGCAGCAGCAGCAAAAACAGCGAAAAGAACAAGAGCAACATCTA
ACAGACATGCCCGCCCGTCTCAGTAAACTCGCGGCAGAACTCTCCTCCGT
CCAGGAGCAGCAACGAGTGGCAGCGGCCACAGCTGCAGCAGCCGCAGCTG
CTGCAATAGAGAGGGAACAGCAGGTAGAGGAGGAGGTGAGGATTCTAAAG
GTGAAGGTGGAAGGTATGGCGAATGAATTCAGGCTGCTCCGATTGGCGAG
GGACGGGAAAGAGGAGGGAGGGAGGGAGGGAGCTGTGGAAGGAGGGGGAA
TTACTGCCGAGAGGGGAAAGGAGGGAGGGAGGGAGGGAGGAGTCCTCCAT
GGACCATACCCTCCTTCTGCCATAAAGCTCTTCTCGCGACCTCCTTTTCC
TCCTCCTCCACTGCCTGTTCGTGTTCTTCACCGTCGTCAACAGCAGCAGC
AGCAGCAGCAGCTTGATAAGAAAGAGGAGGAAGAGAAAGAGAAAGAGAAA
GTGCTTTGCGCTCAAATAGCTGAATTTGATGAAACGAAGAAGGAGGAAAA
GAAGAAGAACGAGGTATCGAAGGAGGGAGAGGCGGAGGCAGAGGCAGAGG
AAGAGGAAGAAGAGAGTCCTGATTTGCTTGCGGGGAGGAAACATTTCTCT
TATCAACACCGAGATGGGGATGAGGAGGAGGAGAAAGAAGAAGAACAGGA
ACCGAATGAAAGGGTAGAGGGAAGGAATGAAAAGGAGACGAGGGTGGTGG
TGCAGGGCGAGGAAGAGGAAGAGGAAATGGAGGAGACGATGACTGGGATT
GAGGTGGTGGTGGATGCACACTTGGCTGCTGCTGCTATTGCTACCGAAAA
CAAAAACCAGCATGAGAAGGAGGATGAGGAGGAGGTGAGAAATCAAGGGA
GGATTCTGAATGTGCATTTGGCAGCAGTAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGAAGCAGCAGAAGCAGCAGATGCGATGGTAGAGGATAA
GGAGGATCAGAAGCAGCAGAAGCAGCAGAAGCAGCAGCTGGATGTTGCCC
CTCCCCCTCGTCCTCCCTCTCTTCCTCCCACCCCTCCTCCTCGCCGTTCC
TATGGCCTGGCTACGGCAGCAACGCCAATTCCCGCTGCTGCTTCGCCTAG
TGCCGCCATGTCCTATTTTGCTTCCTCCCCCGACGGCACCATCTCCATTG
CACAATACCTCCTGCAGAAAAGCGGAGAGCGGGAGGGAGGGGGGTAGTGG
AAGAAGAGGGACACAGCAAAGGCATTGTGGCGATGTGATGCGAGGACAGC
GCGCGAGGAAGGTTGAAAAGGTAGTAGAGAAGCGGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGAAGCGGCGGGGACTCAGTCTGC
GGCAGCTCCAGAATGGTAGAGGTCAGAGGGAAGAGCGAAGAGGGAGAGAG
GAAGGGAGGGAGAGAAGAGAGGATGCATTTGATTTTGCAGTACAGGAAGG
GAAGAAGCTGACGATGGTATTTGTGCGAGAGGGAGAAGGGGGAGGGGGAA
GGGGAGGGGGAGGGATGGAGGGAGGGAGTGGTGTGGGGCGGACGAAGAGG
GAGAGAGGGAAGGAGGGGGGGGGATATGTCTGTAAGAAGAGGGGGAAGAC
ATAGAATTCTACAGAAATGTGCATATGTGCGTTTGTGTGAATGTGTGAGT
GTGTGTTTGTTCCTCTGTGTGTGTGTGTGTGGCTCTGTCGGGATGAGAAG
AGGTAGAGGGAAGGAGGAATGTGCCATGAGAATGAAAAGAAGGGAATACA
ATGAAATGAACAGATGCTGAGTGACATTTACATAAATCCTGTGTGTACAT
AAATTCTGTCTATATACATATGAGAAAAAGGAGGGATAAAAGGACGCCAA
AACAGGCAATGAAAACGAGAGGGTGACGCAACAGCAAAAAGCAGGCAAGG
CG

Coding sequence (CDS) from alignment at scaffold_34:6467..9468-

>mRNA_9452 ID=mRNA_9452|Name=jgi.p|Nanoce1779_2|267110|organism=Nannochloropsis oceanica|type=CDS|length=3492bp|location=Sequence derived from alignment at scaffold_34:6467..9468- (Nannochloropsis oceanica)
ATAGAATTCTACAGAAATGTGCATATGTGCGTTTGTGTGAATGTGTGAGT
GTGTGTTTGTTCCTCTGTGTGTGTGTGTGTGGCTCTGTCGGGATGAGAAG
AGGTAGAGGGAAGGAGGAATGTGCCATGAGAATGAAAAGAAGGGAATACA
ATGAAATGAACAGATGCTGAATGCAGTATCGCTACTCCTCTTCCTACTCC
TCCGCGTACCGTGGCTCCTCGTCCTCCTCGTCCCGCATACCTGCTCCTGC
CCATCGCGCCAACGCAAGCAGCAGCAGCAGCGTCTCCCTGGATAGTATCC
TGCGGTATAGTTGCACAGCGACGGGGGGGGGCAGAGGCAGCAGCAGTAAT
ATTAGCAACAACAGCAGCAATAATAATAACAACGGCCGGGTGAGAGGCCT
CCCTCTCCCTCACTCCCCCTACAACCGACAACAGCAGGAAAAGCAATCAC
AGCGCTCACTTTACGATCACTTTCAACAACAACAACAACTACATCGTCAA
TGGTCTACCGCCGATTTCCCAGCGCCAGCTGCACCCCGTCCTCCTCCATC
TCATCCACCACCGTACTACTCGAATGAAGGAGGAGGAGGAGGAGGTGGAG
GAAGAGGAGGAGGTGGGGGAGACTGGACTGGTCTTGTCTCTGCTGCTGCT
GCTGCTCCTCCTCCTTACACATCTCTTATCATCGGCAATACACCTAGCCA
ACCTTCGCAACACTCCTATTCGCAGTCCCAGCATACCCACCTCCAGCAGC
AACAGCAGCAGCAGCGGCAGGAGGGTGGGAGGGGAGGAAAGGAGGGAGGT
GTGGATGACTTGGTAGCAGCAAAGACACAGCAGCAAATGCTGGACTCACT
ACTCACACTTATTAAAGACGTGCATGAAGTCAAGCGCCAGCTACAGGAGC
AGCAGGAGGAGCAGGAGCAGCACAACCACCATCAGGCAGTCCCGGCGAAG
GCCTTTCCCCCCTCTCCTCCACCGTCTCCAGATCGACACCAGCAGCGACA
GCAGCAGCATCAGCAGCATCAGCAGCAGCAGCAGCAGCAAAAACAGCGAA
AAGAACAAGAGCAACATCTAACAGACATGCCCGCCCGTCTCAGTAAACTC
GCGGCAGAACTCTCCTCCGTCCAGGAGCAGCAACGAGTGGCAGCGGCCAC
AGCTGCAGCAGCCGCAGCTGCTGCAATAGAGAGGGAACAGCAGGTAGAGG
AGGAGGTGAGGATTCTAAAGGTGAAGGTGGAAGGTATGGCGAATGAATTC
AGGCTGCTCCGATTGGCGAGGGACGGGAAAGAGGAGGGAGGGAGGGAGGG
AGCTGTGGAAGGAGGGGGAATTACTGCCGAGAGGGGAAAGGAGGGAGGGA
GGGAGGGAGGAGTCCTCCATGGACCATACCCTCCTTCTGCCATAAAGCTC
TTCTCGCGACCTCCTTTTCCTCCTCCTCCACTGCCTGTTCGTGTTCTTCA
CCGTCGTCAACAGCAGCAGCAGCAGCAGCAGCTTGATAAGAAAGAGGAGG
AAGAGAAAGAGAAAGAGAAAGTGCTTTGCGCTCAAATAGCTGAATTTGAT
GAAACGAAGAAGGAGGAAAAGAAGAAGAACGAGGTATCGAAGGAGGGAGA
GGCGGAGGCAGAGGCAGAGGAAGAGGAAGAAGAGAGTCCTGATTTGCTTG
CGGGGAGGAAACATTTCTCTTATCAACACCGAGATGGGGATGAGGAGGAG
GAGAAAGAAGAAGAACAGGAACCGAATGAAAGGGTAGAGGGAAGGAATAG
AATTCTACAGAAATGTGCATATGTGCGTTTGTGTGAATGTGTGAGTGTGT
GTTTGTTCCTCTGTGTGTGTGTGTGTGGCTCTGTCGGGATGAGAAGAGGT
AGAGGGAAGGAGGAATGTGCCATGAGAATGAAAAGAAGGGAATACAATGA
AATGAACAGATGCTGAATGCAGTATCGCTACTCCTCTTCCTACTCCTCCG
CGTACCGTGGCTCCTCGTCCTCCTCGTCCCGCATACCTGCTCCTGCCCAT
CGCGCCAACGCAAGCAGCAGCAGCAGCGTCTCCCTGGATAGTATCCTGCG
GTATAGTTGCACAGCGACGGGGGGGGGCAGAGGCAGCAGCAGTAATATTA
GCAACAACAGCAGCAATAATAATAACAACGGCCGGGTGAGAGGCCTCCCT
CTCCCTCACTCCCCCTACAACCGACAACAGCAGGAAAAGCAATCACAGCG
CTCACTTTACGATCACTTTCAACAACAACAACAACTACATCGTCAATGGT
CTACCGCCGATTTCCCAGCGCCAGCTGCACCCCGTCCTCCTCCATCTCAT
CCACCACCGTACTACTCGAATGAAGGAGGAGGAGGAGGAGGTGGAGGAAG
AGGAGGAGGTGGGGGAGACTGGACTGGTCTTGTCTCTGCTGCTGCTGCTG
CTCCTCCTCCTTACACATCTCTTATCATCGGCAATACACCTAGCCAACCT
TCGCAACACTCCTATTCGCAGTCCCAGCATACCCACCTCCAGCAGCAACA
GCAGCAGCAGCGGCAGGAGGGTGGGAGGGGAGGAAAGGAGGGAGGTGTGG
ATGACTTGGTAGCAGCAAAGACACAGCAGCAAATGCTGGACTCACTACTC
ACACTTATTAAAGACGTGCATGAAGTCAAGCGCCAGCTACAGGAGCAGCA
GGAGGAGCAGGAGCAGCACAACCACCATCAGGCAGTCCCGGCGAAGGCCT
TTCCCCCCTCTCCTCCACCGTCTCCAGATCGACACCAGCAGCGACAGCAG
CAGCATCAGCAGCATCAGCAGCAGCAGCAGCAGCAAAAACAGCGAAAAGA
ACAAGAGCAACATCTAACAGACATGCCCGCCCGTCTCAGTAAACTCGCGG
CAGAACTCTCCTCCGTCCAGGAGCAGCAACGAGTGGCAGCGGCCACAGCT
GCAGCAGCCGCAGCTGCTGCAATAGAGAGGGAACAGCAGGTAGAGGAGGA
GGTGAGGATTCTAAAGGTGAAGGTGGAAGGTATGGCGAATGAATTCAGGC
TGCTCCGATTGGCGAGGGACGGGAAAGAGGAGGGAGGGAGGGAGGGAGCT
GTGGAAGGAGGGGGAATTACTGCCGAGAGGGGAAAGGAGGGAGGGAGGGA
GGGAGGAGTCCTCCATGGACCATACCCTCCTTCTGCCATAAAGCTCTTCT
CGCGACCTCCTTTTCCTCCTCCTCCACTGCCTGTTCGTGTTCTTCACCGT
CGTCAACAGCAGCAGCAGCAGCAGCAGCTTGATAAGAAAGAGGAGGAAGA
GAAAGAGAAAGAGAAAGTGCTTTGCGCTCAAATAGCTGAATTTGATGAAA
CGAAGAAGGAGGAAAAGAAGAAGAACGAGGTATCGAAGGAGGGAGAGGCG
GAGGCAGAGGCAGAGGAAGAGGAAGAAGAGAGTCCTGATTTGCTTGCGGG
GAGGAAACATTTCTCTTATCAACACCGAGATGGGGATGAGGAGGAGGAGA
AAGAAGAAGAACAGGAACCGAATGAAAGGGTAGAGGGAAGGA

Synonyms

Publications