jgi.p|Nanoce1779_2|606834, mRNA_9195 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606834
Unique NamemRNA_9195
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1000
Alignment locationscaffold_36:191380..192379 +

Link to JBrowse

Properties
Property NameValue
TranscriptId606920
TrackFilteredModels2
ProteinId606834
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:191380..192379 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606834gene_9195Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606834mRNA_9195-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9195CDS_9195Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9195 ID=mRNA_9195|Name=jgi.p|Nanoce1779_2|606834|organism=Nannochloropsis oceanica|type=mRNA|length=1000bp
ACAGGTGCGCAAGAGTGATTCGACCAAGCATTCCTCATCCTCCTCGCCTA
GCCCAATCAGCCCGAGCTCAACGCAACAGCATATTACCATGACTGAGGCA
CCATCAACATCAACACCAGCAATTCAAGCACCAACCGCAGACCCAGCACA
AAAACAACAAGTCCTACTCTCGTTTAGTGGCGGCAAGGATTCCTCCATGG
CCCTGCACGTCCTACTCCAAGATCCCAGCTACGACGTTGTTGGTTTGCTG
ATCAGCGTACGGCAAGACACGGACCGTGTGAGCGTCCATGAGGTACGGCG
GGAGCTTTTGGATGCGCAAGTGGCCGCTCTCCCGGGCAACTTGGCGGTGT
TTGAAGTTGCGTTGCCACCCACCAGCACCAATGCGGAGTACGAAGGCGCT
TTATTTGCTGCCCTGGATGCAGCGCGATGTCGTTTTCCCCAGCTAGCCAT
CTTGGCGTTTGGCGACCTATTTTTGCAGGACGTGCGCGATTATCGCGTAG
GCATGTTGGCTAGATGGTCCGGCGACGACGGTCGTCCCCTCATGCCCCTC
TTCCCCATATGGGGCAGGGATACGACAGCGCTGGCACAAGACGTTATCAA
GCTGGGCTTTCGGAGTCATTTGGTGTGTGTTGATACCACGCAGTTGGGTG
CACGTTTTTCGGGAAGACAGTTTGACGCGGCATTACTAGATGAGCTGCCT
GAGAGCGTAGACCCGTGTGGGGAGAACGGGGAGTTCCACACCTTTGTGAG
TGATGGTCCTGTTTTTAGTAAGCCCGTACCGGTGTGTGGAGGAGAGGTGG
CGCTGCAGGGGCCCGGGAATCGTTTTGCCTTTTGCGATTTGCGGCTGGGA
ATTGGGGAGATGGCGGGCGAGGTAAGAAGGGAATGAGAGGCTTGGTCGAA
GAAGGGTTGAGAGGGAATGCACATAGGAATGACTGTCTGCTAACTGGCTA
CGGCTAGATATAAAATATCTTTAAAAAGAAGTAAACCAAGTGCAGTGAGC
back to top

protein sequence of jgi.p|Nanoce1779_2|606834

>mRNA_9195-protein ID=mRNA_9195-protein|Name=jgi.p|Nanoce1779_2|606834|organism=Nannochloropsis oceanica|type=polypeptide|length=266bp
MTEAPSTSTPAIQAPTADPAQKQQVLLSFSGGKDSSMALHVLLQDPSYDV
VGLLISVRQDTDRVSVHEVRRELLDAQVAALPGNLAVFEVALPPTSTNAE
YEGALFAALDAARCRFPQLAILAFGDLFLQDVRDYRVGMLARWSGDDGRP
LMPLFPIWGRDTTALAQDVIKLGFRSHLVCVDTTQLGARFSGRQFDAALL
DELPESVDPCGENGEFHTFVSDGPVFSKPVPVCGGEVALQGPGNRFAFCD
LRLGIGEMAGEVRRE*
back to top

mRNA from alignment at scaffold_36:191380..192379+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9195 ID=mRNA_9195|Name=jgi.p|Nanoce1779_2|606834|organism=Nannochloropsis oceanica|type=mRNA|length=1000bp|location=Sequence derived from alignment at scaffold_36:191380..192379+ (Nannochloropsis oceanica)
ACAGGTGCGCAAGAGTGATTCGACCAAGCATTCCTCATCCTCCTCGCCTA
GCCCAATCAGCCCGAGCTCAACGCAACAGCATATTACCATGACTGAGGCA
CCATCAACATCAACACCAGCAATTCAAGCACCAACCGCAGACCCAGCACA
AAAACAACAAGTCCTACTCTCGTTTAGTGGCGGCAAGGATTCCTCCATGG
CCCTGCACGTCCTACTCCAAGATCCCAGCTACGACGTTGTTGGTTTGCTG
ATCAGCGTACGGCAAGACACGGACCGTGTGAGCGTCCATGAGGTACGGCG
GGAGCTTTTGGATGCGCAAGTGGCCGCTCTCCCGGGCAACTTGGCGGTGT
TTGAAGTTGCGTTGCCACCCACCAGCACCAATGCGGAGTACGAAGGCGCT
TTATTTGCTGCCCTGGATGCAGCGCGATGTCGTTTTCCCCAGCTAGCCAT
CTTGGCGTTTGGCGACCTATTTTTGCAGGACGTGCGCGATTATCGCGTAG
GCATGTTGGCTAGATGGTCCGGCGACGACGGTCGTCCCCTCATGCCCCTC
TTCCCCATATGGGGCAGGGATACGACAGCGCTGGCACAAGACGTTATCAA
GCTGGGCTTTCGGAGTCATTTGGTGTGTGTTGATACCACGCAGTTGGGTG
CACGTTTTTCGGGAAGACAGTTTGACGCGGCATTACTAGATGAGCTGCCT
GAGAGCGTAGACCCGTGTGGGGAGAACGGGGAGTTCCACACCTTTGTGAG
TGATGGTCCTGTTTTTAGTAAGCCCGTACCGGTGTGTGGAGGAGAGGTGG
CGCTGCAGGGGCCCGGGAATCGTTTTGCCTTTTGCGATTTGCGGCTGGGA
ATTGGGGAGATGGCGGGCGAGGTAAGAAGGGAATGAGAGGCTTGGTCGAA
GAAGGGTTGAGAGGGAATGCACATAGGAATGACTGTCTGCTAACTGGCTA
CGGCTAGATATAAAATATCTTTAAAAAGAAGTAAACCAAGTGCAGTGAGC
back to top

Coding sequence (CDS) from alignment at scaffold_36:191380..192379+

>mRNA_9195 ID=mRNA_9195|Name=jgi.p|Nanoce1779_2|606834|organism=Nannochloropsis oceanica|type=CDS|length=798bp|location=Sequence derived from alignment at scaffold_36:191380..192379+ (Nannochloropsis oceanica)
ATGACTGAGGCACCATCAACATCAACACCAGCAATTCAAGCACCAACCGC
AGACCCAGCACAAAAACAACAAGTCCTACTCTCGTTTAGTGGCGGCAAGG
ATTCCTCCATGGCCCTGCACGTCCTACTCCAAGATCCCAGCTACGACGTT
GTTGGTTTGCTGATCAGCGTACGGCAAGACACGGACCGTGTGAGCGTCCA
TGAGGTACGGCGGGAGCTTTTGGATGCGCAAGTGGCCGCTCTCCCGGGCA
ACTTGGCGGTGTTTGAAGTTGCGTTGCCACCCACCAGCACCAATGCGGAG
TACGAAGGCGCTTTATTTGCTGCCCTGGATGCAGCGCGATGTCGTTTTCC
CCAGCTAGCCATCTTGGCGTTTGGCGACCTATTTTTGCAGGACGTGCGCG
ATTATCGCGTAGGCATGTTGGCTAGATGGTCCGGCGACGACGGTCGTCCC
CTCATGCCCCTCTTCCCCATATGGGGCAGGGATACGACAGCGCTGGCACA
AGACGTTATCAAGCTGGGCTTTCGGAGTCATTTGGTGTGTGTTGATACCA
CGCAGTTGGGTGCACGTTTTTCGGGAAGACAGTTTGACGCGGCATTACTA
GATGAGCTGCCTGAGAGCGTAGACCCGTGTGGGGAGAACGGGGAGTTCCA
CACCTTTGTGAGTGATGGTCCTGTTTTTAGTAAGCCCGTACCGGTGTGTG
GAGGAGAGGTGGCGCTGCAGGGGCCCGGGAATCGTTTTGCCTTTTGCGAT
TTGCGGCTGGGAATTGGGGAGATGGCGGGCGAGGTAAGAAGGGAATGA
back to top
Synonyms
Publications