jgi.p|Nanoce1779_2|607420, mRNA_9702 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|607420
Unique Name	mRNA_9702
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1185
Alignment location	scaffold_38:168221..169405 -

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Properties


Property Name	Value
TranscriptId	607506
Track	FilteredModels2
ProteinId	607420

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_38	supercontig	scaffold_38:168221..169405 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|607420	gene_9702	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|607420	mRNA_9702-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9702	CDS_9702	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_38:168221..169405-
coding sequence from alignment at scaffold_38:168221..169405-

mRNA sequence

>mRNA_9702 ID=mRNA_9702|Name=jgi.p|Nanoce1779_2|607420|organism=Nannochloropsis oceanica|type=mRNA|length=1185bp
TCACAAATGCACATATGTAAATATCTATGTACACTCATGCACTCACAAAT
GTGCATATGTAAATATTTATATAATTCATATAATCAGATAAATGTTGATG
TTCAATGAAGATGTAAACTCAATTTTGAACTCCAGCACCCTCGCTCCGGC
ATGATTCCCCGCTCTTTCTCCCACATTAAACACAAAGCATACACAGACAA
CTGCAACTGCCCTCTCACCTCCCCGCCGTCATATTCTCCCCATTTCTGTT
ACACACGGCAGGTGTCGCCTTTGAAGATCCTCTCTTCGACTAGGTTTTGA
TTAAAGTGATGTTGAAGGGCAGAGACATAAGCTATAAAGGGTAGATACGC
AACACTCACTCGATCGTGCACCTTCTAAAGCAACTGCTGGTACTGCTGCT
ACTGCTGCTGCTGCTGCTACTGGCGCTGATTCTCTGTACGGTGTGTTAGC
CTCTTACGTTCTCTGCATCGGCGAATTGAGGCACACTGCAGATACATATT
GATGTACACGTACCTCTCTGTCGTCGTCATCATCGTCTTCTTCCTCTGCT
TCTCCTTCTTTTCCCTCCTTCTCTACCTTTCCTTCTTTTTCTCTAGCTTC
TTCTTAATCTTCCTCTTTTTCTCCCATCAATTTTCCTCCTTGCAACATTT
TGCCGCCGTCTTTAAACACCAAATAGTAAATGGACTATCGACCTGCGTAT
TTTGGGTTCATCTGCCCCGCACATCAATCCGAATCAGCAGGATTCTTATC
GCCGCCCCTAAAAATCTTTCTCACTCCCTCCCTCGTTATTTACACATGGC
CTCTACACAAATCCACATGCAGATTTATTCACATTCGAATTCATGAAACG
TTCCCTCCCTTCCTTCCTCCTTCCTTCTATCTCCTTAGATACACACTACT
CGTGGCAGCCCTGCACGCTGCTGCATCTGCCGCTGCTGTCTCCGACTCAT
CCTCTCCGCCCTCAACAACCCCACCCCTCCTTCTTTCCCTTCCTTCTTTT
CTCCCGCACTTTCCCCCACCGCGAGGGCCATCTCCAGCGCCTTCCCCTCC
AGGACCCTTGACAAGAGAACCCCCCGGACGCGATGGAGGGATTTACGTGT
TTCGAAGGACCAGCTCGTGCCCTGCGCTCCTCCCTGCGCGAGCATCGCTA
GAGATAGGGCCGGGCAGCTTCCACCTTCCAGGACT

protein sequence of jgi.p|Nanoce1779_2|607420

>mRNA_9702-protein ID=mRNA_9702-protein|Name=jgi.p|Nanoce1779_2|607420|organism=Nannochloropsis oceanica|type=polypeptide|length=115bp
MYTYLSVVVIIVFFLCFSFFSLLLYLSFFFSSFFLIFLFFSHQFSSLQHF
AAVFKHQIVNGLSTCVFWVHLPRTSIRISRILIAAPKNLSHSLPRYLHMA
STQIHMQIYSHSNS*

mRNA from alignment at scaffold_38:168221..169405-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9702 ID=mRNA_9702|Name=jgi.p|Nanoce1779_2|607420|organism=Nannochloropsis oceanica|type=mRNA|length=1185bp|location=Sequence derived from alignment at scaffold_38:168221..169405- (Nannochloropsis oceanica)
TCACAAATGCACATATGTAAATATCTATGTACACTCATGCACTCACAAAT
GTGCATATGTAAATATTTATATAATTCATATAATCAGATAAATGTTGATG
TTCAATGAAGATGTAAACTCAATTTTGAACTCCAGCACCCTCGCTCCGGC
ATGATTCCCCGCTCTTTCTCCCACATTAAACACAAAGCATACACAGACAA
CTGCAACTGCCCTCTCACCTCCCCGCCGTCATATTCTCCCCATTTCTGTT
ACACACGGCAGGTGTCGCCTTTGAAGATCCTCTCTTCGACTAGGTTTTGA
TTAAAGTGATGTTGAAGGGCAGAGACATAAGCTATAAAGGGTAGATACGC
AACACTCACTCGATCGTGCACCTTCTAAAGCAACTGCTGGTACTGCTGCT
ACTGCTGCTGCTGCTGCTACTGGCGCTGATTCTCTGTACGGTGTGTTAGC
CTCTTACGTTCTCTGCATCGGCGAATTGAGGCACACTGCAGATACATATT
GATGTACACGTACCTCTCTGTCGTCGTCATCATCGTCTTCTTCCTCTGCT
TCTCCTTCTTTTCCCTCCTTCTCTACCTTTCCTTCTTTTTCTCTAGCTTC
TTCTTAATCTTCCTCTTTTTCTCCCATCAATTTTCCTCCTTGCAACATTT
TGCCGCCGTCTTTAAACACCAAATAGTAAATGGACTATCGACCTGCGTAT
TTTGGGTTCATCTGCCCCGCACATCAATCCGAATCAGCAGGATTCTTATC
GCCGCCCCTAAAAATCTTTCTCACTCCCTCCCTCGTTATTTACACATGGC
CTCTACACAAATCCACATGCAGATTTATTCACATTCGAATTCATGAAACG
TTCCCTCCCTTCCTTCCTCCTTCCTTCTATCTCCTTAGATACACACTACT
CGTGGCAGCCCTGCACGCTGCTGCATCTGCCGCTGCTGTCTCCGACTCAT
CCTCTCCGCCCTCAACAACCCCACCCCTCCTTCTTTCCCTTCCTTCTTTT
CTCCCGCACTTTCCCCCACCGCGAGGGCCATCTCCAGCGCCTTCCCCTCC
AGGACCCTTGACAAGAGAACCCCCCGGACGCGATGGAGGGATTTACGTGT
TTCGAAGGACCAGCTCGTGCCCTGCGCTCCTCCCTGCGCGAGCATCGCTA
GAGATAGGGCCGGGCAGCTTCCACCTTCCAGGACT

Coding sequence (CDS) from alignment at scaffold_38:168221..169405-

>mRNA_9702 ID=mRNA_9702|Name=jgi.p|Nanoce1779_2|607420|organism=Nannochloropsis oceanica|type=CDS|length=345bp|location=Sequence derived from alignment at scaffold_38:168221..169405- (Nannochloropsis oceanica)
ATGTACACGTACCTCTCTGTCGTCGTCATCATCGTCTTCTTCCTCTGCTT
CTCCTTCTTTTCCCTCCTTCTCTACCTTTCCTTCTTTTTCTCTAGCTTCT
TCTTAATCTTCCTCTTTTTCTCCCATCAATTTTCCTCCTTGCAACATTTT
GCCGCCGTCTTTAAACACCAAATAGTAAATGGACTATCGACCTGCGTATT
TTGGGTTCATCTGCCCCGCACATCAATCCGAATCAGCAGGATTCTTATCG
CCGCCCCTAAAAATCTTTCTCACTCCCTCCCTCGTTATTTACACATGGCC
TCTACACAAATCCACATGCAGATTTATTCACATTCGAATTCATGA

Synonyms

Publications