jgi.p|Nanoce1779_2|298657, mRNA_2277 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|298657
Unique Name	mRNA_2277
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2461
Alignment location	scaffold_4:1246614..1249074 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	298743
Track	FilteredModels2
ProteinId	298657

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:1246614..1249074 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|298657	gene_2277	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|298657	mRNA_2277-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2277	CDS_2277	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:1246614..1249074-
coding sequence from alignment at scaffold_4:1246614..1249074-

mRNA sequence

>mRNA_2277 ID=mRNA_2277|Name=jgi.p|Nanoce1779_2|298657|organism=Nannochloropsis oceanica|type=mRNA|length=2461bp
GTATGAATGCGCTGGCCAAGGGTTCAAAAATGTAGGCAAGTAAGAACGAA
GAATGAAATTAAAAAAAAAAGAGGATGGGCCCAAAAACGGCAATGCCTCC
CTCTCCGCGCCATTTTAGTTGGACTCAGACTTGGCGCGTCTTGGCTCTTT
GACACGCAGAGCACATCACCAAATACTACAGTCACTCGCGGCATACACAG
GACGCATAAAAGGACTTTCAGTGCCAGTAAAGCCTTTGCAGTCCGAAACC
AGCAACCACCATTTCGCCGAGGCTCGCTCTCTTTTCTAATCTTCACGTCA
TTCATCTCGGCAGCAAACGGCATCATGGCCCCGCATGTGCGTGGGACACC
TACCCGTGTTCGGCCTGCCCTTCTCCACTTCACCTTCGTAGTCCTAGCTG
TCTTCTTCGCCTTCCCGGCCCTGAGCGTGCCATTGCTCCAGACTTTTAAG
GGGGCCCAAGACTTCCCGCCGGCTTTGACCTACGCCCTCGTCATGGCAGG
GGCGGCCGCGTGGGCCTTGGCCTCCTTCACCGCGTCCTCCGCCTGGCTCT
CCCTCGGCCTGGCCATAAGTTTGGCAGGAGGTCTGCACTACCTCTCGACC
CTGGGGCTTGTTCGGGCCGCGGTGGTTGTACCTGCAACATTTCCCTTGGT
CCTGGCGGGCTCGATCAGCGCCCCAGCCCTCACGTCCTTCGACCCCATTT
TCATTCTCGGCCTACTTGCTGGAATGGGCTTCCAGGGATTTCAGCATTTG
CAAGAGACAGCACGCGTCGAGGTCTTCGCCCTTGTGACTGTGGGGTTCGT
GACATTATTGACTTCCCCTGGTTTAATTGGTTACACGGCCTCGCGGGCTC
TCTCCCCTCTCAGTACCTACGCCTTCCAACTCTCTGGCGCGGCCCTTGTC
CTTATCCTCGCCTTCGTTCAACCATCCCTTCCTTCCTCGTTCATATCTGG
TCTTACCCTTGCCCTTCTACTGGCGCGCTATCTGAGCAAGCCCCCGGAGT
TCACAGAAGCTGCGCGGCAGAACGCCCGTGCCTCCCATTGGCTCTTCGCC
GCCTTTCTAGCTACCCTGTCGATCATCCTCACATTCGAAGTAAACGAACA
GTACAACCCGGCAGGCCTCACAGCATTTACATTCATCCTACTCGGCACGG
GCGTGGCGGTCCTCAGCACATCATGTCTGGCAGCCACTGCACGAGTTTGG
GGGCCAGTGCGGTCAGGCGAACACCAGATGGTGACATTGGACTTCCTAGC
CCTCTGCGCGTACTTCATCATGCCCCTCCTTTACGTCACCTACCTCGGTC
TACAGCAGCTCTTGCCGTCTCTTTCGTCCTCTCCCCTCCTGATTTCCGCT
CCGGGCGTGGACTGGGTCCTGCACCTGCTGCAGCCGCTGCAGCGACCACT
GCAGCTGCTGCAGCTCTCATATCCCTTGGCGCCTGCTTTGTTGCTGGGGT
GGATGGTGGTGGCCACCCAGGAAGCATTCGAGGAGTCCTCGATTCTGTGG
GCGCATTGGTTGATCGGAACGTACTCATTGGGTACGCTCGATACGAAGCA
CGTGGCATTAGTGGCCCGATTGGAGGCGCTCTTGGAAAGCGTGCCAAATG
AAGGAGGGAGGGAGGGAGAGGAGTATCTGCCGGCATTGCTGAAGGAGGCA
GGGTTGCCGGTGTTGAATATTTTTGTCTCGCCTTCCGTCGCTATCTCTCA
TGGGGATTTGTGTGCGGCATTGAGCAAAGAGGGGCATGTATTAGGGTTGG
AAACAGCAGCAGGACCTTTCGCGTTTCCTCCGTCAGTGATGAAGGAGGTG
TCAACAGGAGCAGCAGCACTGAAGAAAGCGCAAGCTAGTGGTGGGGGCAA
AGGAGAGGTGGACTGGTACCTCGGGACTCAAGGATACAGAAATCCATGGG
CTCTTTGGAAGGCCTCAACGATGAATATGCGTTTTGTCGCACCGGGCCAC
AGGGTGGTGTTGGGGGATAACGCAGGGGTGGCTCTGTGTAGGCTGCTGGA
TCCATGGTGCAAAGGGGGTGTGGTGATGGTGGAGGTGGGGGCGAGAGGGG
TACATTTGCTGGCAACATTGAAGGACTTGCGGGAGCAGGCGGAGAGGGCC
GGGTATGTGGTAGACTCCTTGTCAGCTGTTTGCCCAGAGGTGCAGCCCAT
GGTGCTGCCGGTCGAGGGAGGAACTGGAGCGTTTTGAGTAGAGTGGAGGC
GCGTGGGATTAGGGAATGAAACGAGAGAGAAGGAGACGAATGGTATGCAT
TAAAAATATGAAGACAATAGGAAAATAAATAATCGAAAAGTACGGCACGT
GGACTTATTTATAGAAAAGGGGAGGTTCTTGTTTTCTTCTGTATTCTTTT
TTGGACGATTCTTTGATTTAAGTGATATAAAAGAGGGAAAGACAATGCTC
TGAATAATCGTGCTGGAGTAAGATCGTCACATTGGAAACACATTGACATG
AGAGGGGAAAA

protein sequence of jgi.p|Nanoce1779_2|298657

>mRNA_2277-protein ID=mRNA_2277-protein|Name=jgi.p|Nanoce1779_2|298657|organism=Nannochloropsis oceanica|type=polypeptide|length=727bp
MRWPRVQKCRQVRTKNEIKKKRGWAQKRQCLPLRAILVGLRLGASWLFDT
QSTSPNTTVTRGIHRTHKRTFSASKAFAVRNQQPPFRRGSLSFLIFTSFI
SAANGIMAPHVRGTPTRVRPALLHFTFVVLAVFFAFPALSVPLLQTFKGA
QDFPPALTYALVMAGAAAWALASFTASSAWLSLGLAISLAGGLHYLSTLG
LVRAAVVVPATFPLVLAGSISAPALTSFDPIFILGLLAGMGFQGFQHLQE
TARVEVFALVTVGFVTLLTSPGLIGYTASRALSPLSTYAFQLSGAALVLI
LAFVQPSLPSSFISGLTLALLLARYLSKPPEFTEAARQNARASHWLFAAF
LATLSIILTFEVNEQYNPAGLTAFTFILLGTGVAVLSTSCLAATARVWGP
VRSGEHQMVTLDFLALCAYFIMPLLYVTYLGLQQLLPSLSSSPLLISAPG
VDWVLHLLQPLQRPLQLLQLSYPLAPALLLGWMVVATQEAFEESSILWAH
WLIGTYSLGTLDTKHVALVARLEALLESVPNEGGREGEEYLPALLKEAGL
PVLNIFVSPSVAISHGDLCAALSKEGHVLGLETAAGPFAFPPSVMKEVST
GAAALKKAQASGGGKGEVDWYLGTQGYRNPWALWKASTMNMRFVAPGHRV
VLGDNAGVALCRLLDPWCKGGVVMVEVGARGVHLLATLKDLREQAERAGY
VVDSLSAVCPEVQPMVLPVEGGTGAF*

mRNA from alignment at scaffold_4:1246614..1249074-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2277 ID=mRNA_2277|Name=jgi.p|Nanoce1779_2|298657|organism=Nannochloropsis oceanica|type=mRNA|length=2461bp|location=Sequence derived from alignment at scaffold_4:1246614..1249074- (Nannochloropsis oceanica)
GTATGAATGCGCTGGCCAAGGGTTCAAAAATGTAGGCAAGTAAGAACGAA
GAATGAAATTAAAAAAAAAAGAGGATGGGCCCAAAAACGGCAATGCCTCC
CTCTCCGCGCCATTTTAGTTGGACTCAGACTTGGCGCGTCTTGGCTCTTT
GACACGCAGAGCACATCACCAAATACTACAGTCACTCGCGGCATACACAG
GACGCATAAAAGGACTTTCAGTGCCAGTAAAGCCTTTGCAGTCCGAAACC
AGCAACCACCATTTCGCCGAGGCTCGCTCTCTTTTCTAATCTTCACGTCA
TTCATCTCGGCAGCAAACGGCATCATGGCCCCGCATGTGCGTGGGACACC
TACCCGTGTTCGGCCTGCCCTTCTCCACTTCACCTTCGTAGTCCTAGCTG
TCTTCTTCGCCTTCCCGGCCCTGAGCGTGCCATTGCTCCAGACTTTTAAG
GGGGCCCAAGACTTCCCGCCGGCTTTGACCTACGCCCTCGTCATGGCAGG
GGCGGCCGCGTGGGCCTTGGCCTCCTTCACCGCGTCCTCCGCCTGGCTCT
CCCTCGGCCTGGCCATAAGTTTGGCAGGAGGTCTGCACTACCTCTCGACC
CTGGGGCTTGTTCGGGCCGCGGTGGTTGTACCTGCAACATTTCCCTTGGT
CCTGGCGGGCTCGATCAGCGCCCCAGCCCTCACGTCCTTCGACCCCATTT
TCATTCTCGGCCTACTTGCTGGAATGGGCTTCCAGGGATTTCAGCATTTG
CAAGAGACAGCACGCGTCGAGGTCTTCGCCCTTGTGACTGTGGGGTTCGT
GACATTATTGACTTCCCCTGGTTTAATTGGTTACACGGCCTCGCGGGCTC
TCTCCCCTCTCAGTACCTACGCCTTCCAACTCTCTGGCGCGGCCCTTGTC
CTTATCCTCGCCTTCGTTCAACCATCCCTTCCTTCCTCGTTCATATCTGG
TCTTACCCTTGCCCTTCTACTGGCGCGCTATCTGAGCAAGCCCCCGGAGT
TCACAGAAGCTGCGCGGCAGAACGCCCGTGCCTCCCATTGGCTCTTCGCC
GCCTTTCTAGCTACCCTGTCGATCATCCTCACATTCGAAGTAAACGAACA
GTACAACCCGGCAGGCCTCACAGCATTTACATTCATCCTACTCGGCACGG
GCGTGGCGGTCCTCAGCACATCATGTCTGGCAGCCACTGCACGAGTTTGG
GGGCCAGTGCGGTCAGGCGAACACCAGATGGTGACATTGGACTTCCTAGC
CCTCTGCGCGTACTTCATCATGCCCCTCCTTTACGTCACCTACCTCGGTC
TACAGCAGCTCTTGCCGTCTCTTTCGTCCTCTCCCCTCCTGATTTCCGCT
CCGGGCGTGGACTGGGTCCTGCACCTGCTGCAGCCGCTGCAGCGACCACT
GCAGCTGCTGCAGCTCTCATATCCCTTGGCGCCTGCTTTGTTGCTGGGGT
GGATGGTGGTGGCCACCCAGGAAGCATTCGAGGAGTCCTCGATTCTGTGG
GCGCATTGGTTGATCGGAACGTACTCATTGGGTACGCTCGATACGAAGCA
CGTGGCATTAGTGGCCCGATTGGAGGCGCTCTTGGAAAGCGTGCCAAATG
AAGGAGGGAGGGAGGGAGAGGAGTATCTGCCGGCATTGCTGAAGGAGGCA
GGGTTGCCGGTGTTGAATATTTTTGTCTCGCCTTCCGTCGCTATCTCTCA
TGGGGATTTGTGTGCGGCATTGAGCAAAGAGGGGCATGTATTAGGGTTGG
AAACAGCAGCAGGACCTTTCGCGTTTCCTCCGTCAGTGATGAAGGAGGTG
TCAACAGGAGCAGCAGCACTGAAGAAAGCGCAAGCTAGTGGTGGGGGCAA
AGGAGAGGTGGACTGGTACCTCGGGACTCAAGGATACAGAAATCCATGGG
CTCTTTGGAAGGCCTCAACGATGAATATGCGTTTTGTCGCACCGGGCCAC
AGGGTGGTGTTGGGGGATAACGCAGGGGTGGCTCTGTGTAGGCTGCTGGA
TCCATGGTGCAAAGGGGGTGTGGTGATGGTGGAGGTGGGGGCGAGAGGGG
TACATTTGCTGGCAACATTGAAGGACTTGCGGGAGCAGGCGGAGAGGGCC
GGGTATGTGGTAGACTCCTTGTCAGCTGTTTGCCCAGAGGTGCAGCCCAT
GGTGCTGCCGGTCGAGGGAGGAACTGGAGCGTTTTGAGTAGAGTGGAGGC
GCGTGGGATTAGGGAATGAAACGAGAGAGAAGGAGACGAATGGTATGCAT
TAAAAATATGAAGACAATAGGAAAATAAATAATCGAAAAGTACGGCACGT
GGACTTATTTATAGAAAAGGGGAGGTTCTTGTTTTCTTCTGTATTCTTTT
TTGGACGATTCTTTGATTTAAGTGATATAAAAGAGGGAAAGACAATGCTC
TGAATAATCGTGCTGGAGTAAGATCGTCACATTGGAAACACATTGACATG
AGAGGGGAAAA

Coding sequence (CDS) from alignment at scaffold_4:1246614..1249074-

>mRNA_2277 ID=mRNA_2277|Name=jgi.p|Nanoce1779_2|298657|organism=Nannochloropsis oceanica|type=CDS|length=2181bp|location=Sequence derived from alignment at scaffold_4:1246614..1249074- (Nannochloropsis oceanica)
ATGCGCTGGCCAAGGGTTCAAAAATGTAGGCAAGTAAGAACGAAGAATGA
AATTAAAAAAAAAAGAGGATGGGCCCAAAAACGGCAATGCCTCCCTCTCC
GCGCCATTTTAGTTGGACTCAGACTTGGCGCGTCTTGGCTCTTTGACACG
CAGAGCACATCACCAAATACTACAGTCACTCGCGGCATACACAGGACGCA
TAAAAGGACTTTCAGTGCCAGTAAAGCCTTTGCAGTCCGAAACCAGCAAC
CACCATTTCGCCGAGGCTCGCTCTCTTTTCTAATCTTCACGTCATTCATC
TCGGCAGCAAACGGCATCATGGCCCCGCATGTGCGTGGGACACCTACCCG
TGTTCGGCCTGCCCTTCTCCACTTCACCTTCGTAGTCCTAGCTGTCTTCT
TCGCCTTCCCGGCCCTGAGCGTGCCATTGCTCCAGACTTTTAAGGGGGCC
CAAGACTTCCCGCCGGCTTTGACCTACGCCCTCGTCATGGCAGGGGCGGC
CGCGTGGGCCTTGGCCTCCTTCACCGCGTCCTCCGCCTGGCTCTCCCTCG
GCCTGGCCATAAGTTTGGCAGGAGGTCTGCACTACCTCTCGACCCTGGGG
CTTGTTCGGGCCGCGGTGGTTGTACCTGCAACATTTCCCTTGGTCCTGGC
GGGCTCGATCAGCGCCCCAGCCCTCACGTCCTTCGACCCCATTTTCATTC
TCGGCCTACTTGCTGGAATGGGCTTCCAGGGATTTCAGCATTTGCAAGAG
ACAGCACGCGTCGAGGTCTTCGCCCTTGTGACTGTGGGGTTCGTGACATT
ATTGACTTCCCCTGGTTTAATTGGTTACACGGCCTCGCGGGCTCTCTCCC
CTCTCAGTACCTACGCCTTCCAACTCTCTGGCGCGGCCCTTGTCCTTATC
CTCGCCTTCGTTCAACCATCCCTTCCTTCCTCGTTCATATCTGGTCTTAC
CCTTGCCCTTCTACTGGCGCGCTATCTGAGCAAGCCCCCGGAGTTCACAG
AAGCTGCGCGGCAGAACGCCCGTGCCTCCCATTGGCTCTTCGCCGCCTTT
CTAGCTACCCTGTCGATCATCCTCACATTCGAAGTAAACGAACAGTACAA
CCCGGCAGGCCTCACAGCATTTACATTCATCCTACTCGGCACGGGCGTGG
CGGTCCTCAGCACATCATGTCTGGCAGCCACTGCACGAGTTTGGGGGCCA
GTGCGGTCAGGCGAACACCAGATGGTGACATTGGACTTCCTAGCCCTCTG
CGCGTACTTCATCATGCCCCTCCTTTACGTCACCTACCTCGGTCTACAGC
AGCTCTTGCCGTCTCTTTCGTCCTCTCCCCTCCTGATTTCCGCTCCGGGC
GTGGACTGGGTCCTGCACCTGCTGCAGCCGCTGCAGCGACCACTGCAGCT
GCTGCAGCTCTCATATCCCTTGGCGCCTGCTTTGTTGCTGGGGTGGATGG
TGGTGGCCACCCAGGAAGCATTCGAGGAGTCCTCGATTCTGTGGGCGCAT
TGGTTGATCGGAACGTACTCATTGGGTACGCTCGATACGAAGCACGTGGC
ATTAGTGGCCCGATTGGAGGCGCTCTTGGAAAGCGTGCCAAATGAAGGAG
GGAGGGAGGGAGAGGAGTATCTGCCGGCATTGCTGAAGGAGGCAGGGTTG
CCGGTGTTGAATATTTTTGTCTCGCCTTCCGTCGCTATCTCTCATGGGGA
TTTGTGTGCGGCATTGAGCAAAGAGGGGCATGTATTAGGGTTGGAAACAG
CAGCAGGACCTTTCGCGTTTCCTCCGTCAGTGATGAAGGAGGTGTCAACA
GGAGCAGCAGCACTGAAGAAAGCGCAAGCTAGTGGTGGGGGCAAAGGAGA
GGTGGACTGGTACCTCGGGACTCAAGGATACAGAAATCCATGGGCTCTTT
GGAAGGCCTCAACGATGAATATGCGTTTTGTCGCACCGGGCCACAGGGTG
GTGTTGGGGGATAACGCAGGGGTGGCTCTGTGTAGGCTGCTGGATCCATG
GTGCAAAGGGGGTGTGGTGATGGTGGAGGTGGGGGCGAGAGGGGTACATT
TGCTGGCAACATTGAAGGACTTGCGGGAGCAGGCGGAGAGGGCCGGGTAT
GTGGTAGACTCCTTGTCAGCTGTTTGCCCAGAGGTGCAGCCCATGGTGCT
GCCGGTCGAGGGAGGAACTGGAGCGTTTTGA

Synonyms

Publications