jgi.p|Nanoce1779_2|579558, mRNA_2231 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579558
Unique NamemRNA_2231
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1077
Alignment locationscaffold_4:1120292..1121368 +

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Properties
Property NameValue
TranscriptId579644
TrackFilteredModels2
ProteinId579558
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:1120292..1121368 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579558gene_2231Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579558mRNA_2231-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2231CDS_2231Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2231 ID=mRNA_2231|Name=jgi.p|Nanoce1779_2|579558|organism=Nannochloropsis oceanica|type=mRNA|length=1077bp
AACAGAATATGGCGATAGGACGGCCCTACGTTATGCTGGTGCTCGTCACC
CTCTTCCTCGCCACCTTGTCCACCGTGCGTGCCGACGCTTGTCCTACGCC
CGAGTACACCGTGAAGCCCTCTGGCCGAGGCAGGCGTGTGTGGGCAGATA
AGGTGACCAGGATTAGATTGACCATCAAGAATACTTCCCCATTTGCGCTT
GACAATTACGTGATCCGAATGGGTGTACCTACGGACCACGTCACCTACCA
ATCATATAATGTATTGGGACACACGGCGAGGAGGAAGGCAATCACCAACT
TTCTCACGAAGCCTGATGGTAGCCTTGAGTGGACCCTCTTTGACATGCCT
GCAGGAAAGGACTTCAGATTCCTCATTTTTGTGAAAATTCGTGATTGCGC
TTCTCTTGGCGCCATCTCCTTTCCTATCTCCAGCTTTTATAATAGAGTAA
ATGATACTTGCCCCTTCGACGGACCTGCTGCCAAAATGCGCATCGTCATG
CCCAAAAAAACAAAGGGGAATAGGCGCCCTCCCATGCCCACAGGATGTCC
TACCCCGGCTCCCACCATTGCTCCCAGTGCCGCTCCCAGCCTTGCGCCCA
TCTAATCTGGTTGTGGACCCGAGGTGGTTTTTCTACTTGGTAATACGATG
CTTTGGCGAAGGGGGAGGCATGCGAGTTGCTGCGAAGTAAATGGTGGCCT
TTGAGAAGTGCCATTTGAGAAGTGCCATTTGAGAAGTGCATTCAAATGAA
AGGAAGAAAGAGGACACAGACGCCCTGGCACTCGGGACAGCGGCTGTACG
GTGGAGGAGGAGGCTGAGGACGAGGACGAGGACGGGGACGGGGACGAGGA
AGACGAGGAAAATTGAATTGCATGTTAGGAGGATATGCGAAAGGAATTGA
CAACGATTAGACGAAGGATAACTACACCCGAAAAGAGGACACGGACGTCG
TTGCACTCGGAGTAGCAGCCAGATGGCAGAGGACGCGGACGAAGAGGACG
AGGACGAGAGTTGAATTGTATGAATTGCATCAAGAGAAAGATATGAAAAA
GACACAGACTACGATGAAACGAAGGAG
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protein sequence of jgi.p|Nanoce1779_2|579558

>mRNA_2231-protein ID=mRNA_2231-protein|Name=jgi.p|Nanoce1779_2|579558|organism=Nannochloropsis oceanica|type=polypeptide|length=199bp
MAIGRPYVMLVLVTLFLATLSTVRADACPTPEYTVKPSGRGRRVWADKVT
RIRLTIKNTSPFALDNYVIRMGVPTDHVTYQSYNVLGHTARRKAITNFLT
KPDGSLEWTLFDMPAGKDFRFLIFVKIRDCASLGAISFPISSFYNRVNDT
CPFDGPAAKMRIVMPKKTKGNRRPPMPTGCPTPAPTIAPSAAPSLAPI*
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mRNA from alignment at scaffold_4:1120292..1121368+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2231 ID=mRNA_2231|Name=jgi.p|Nanoce1779_2|579558|organism=Nannochloropsis oceanica|type=mRNA|length=1077bp|location=Sequence derived from alignment at scaffold_4:1120292..1121368+ (Nannochloropsis oceanica)
AACAGAATATGGCGATAGGACGGCCCTACGTTATGCTGGTGCTCGTCACC
CTCTTCCTCGCCACCTTGTCCACCGTGCGTGCCGACGCTTGTCCTACGCC
CGAGTACACCGTGAAGCCCTCTGGCCGAGGCAGGCGTGTGTGGGCAGATA
AGGTGACCAGGATTAGATTGACCATCAAGAATACTTCCCCATTTGCGCTT
GACAATTACGTGATCCGAATGGGTGTACCTACGGACCACGTCACCTACCA
ATCATATAATGTATTGGGACACACGGCGAGGAGGAAGGCAATCACCAACT
TTCTCACGAAGCCTGATGGTAGCCTTGAGTGGACCCTCTTTGACATGCCT
GCAGGAAAGGACTTCAGATTCCTCATTTTTGTGAAAATTCGTGATTGCGC
TTCTCTTGGCGCCATCTCCTTTCCTATCTCCAGCTTTTATAATAGAGTAA
ATGATACTTGCCCCTTCGACGGACCTGCTGCCAAAATGCGCATCGTCATG
CCCAAAAAAACAAAGGGGAATAGGCGCCCTCCCATGCCCACAGGATGTCC
TACCCCGGCTCCCACCATTGCTCCCAGTGCCGCTCCCAGCCTTGCGCCCA
TCTAATCTGGTTGTGGACCCGAGGTGGTTTTTCTACTTGGTAATACGATG
CTTTGGCGAAGGGGGAGGCATGCGAGTTGCTGCGAAGTAAATGGTGGCCT
TTGAGAAGTGCCATTTGAGAAGTGCCATTTGAGAAGTGCATTCAAATGAA
AGGAAGAAAGAGGACACAGACGCCCTGGCACTCGGGACAGCGGCTGTACG
GTGGAGGAGGAGGCTGAGGACGAGGACGAGGACGGGGACGGGGACGAGGA
AGACGAGGAAAATTGAATTGCATGTTAGGAGGATATGCGAAAGGAATTGA
CAACGATTAGACGAAGGATAACTACACCCGAAAAGAGGACACGGACGTCG
TTGCACTCGGAGTAGCAGCCAGATGGCAGAGGACGCGGACGAAGAGGACG
AGGACGAGAGTTGAATTGTATGAATTGCATCAAGAGAAAGATATGAAAAA
GACACAGACTACGATGAAACGAAGGAG
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Coding sequence (CDS) from alignment at scaffold_4:1120292..1121368+

>mRNA_2231 ID=mRNA_2231|Name=jgi.p|Nanoce1779_2|579558|organism=Nannochloropsis oceanica|type=CDS|length=597bp|location=Sequence derived from alignment at scaffold_4:1120292..1121368+ (Nannochloropsis oceanica)
ATGGCGATAGGACGGCCCTACGTTATGCTGGTGCTCGTCACCCTCTTCCT
CGCCACCTTGTCCACCGTGCGTGCCGACGCTTGTCCTACGCCCGAGTACA
CCGTGAAGCCCTCTGGCCGAGGCAGGCGTGTGTGGGCAGATAAGGTGACC
AGGATTAGATTGACCATCAAGAATACTTCCCCATTTGCGCTTGACAATTA
CGTGATCCGAATGGGTGTACCTACGGACCACGTCACCTACCAATCATATA
ATGTATTGGGACACACGGCGAGGAGGAAGGCAATCACCAACTTTCTCACG
AAGCCTGATGGTAGCCTTGAGTGGACCCTCTTTGACATGCCTGCAGGAAA
GGACTTCAGATTCCTCATTTTTGTGAAAATTCGTGATTGCGCTTCTCTTG
GCGCCATCTCCTTTCCTATCTCCAGCTTTTATAATAGAGTAAATGATACT
TGCCCCTTCGACGGACCTGCTGCCAAAATGCGCATCGTCATGCCCAAAAA
AACAAAGGGGAATAGGCGCCCTCCCATGCCCACAGGATGTCCTACCCCGG
CTCCCACCATTGCTCCCAGTGCCGCTCCCAGCCTTGCGCCCATCTAA
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Synonyms
Publications