jgi.p|Nanoce1779_2|579215, mRNA_2134 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579215
Unique NamemRNA_2134
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length955
Alignment locationscaffold_4:879481..880523 +

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Properties
Property NameValue
TranscriptId579301
TrackFilteredModels2
ProteinId579215
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:879481..880523 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579215gene_2134Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579215mRNA_2134-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2134CDS_2134Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2134 ID=mRNA_2134|Name=jgi.p|Nanoce1779_2|579215|organism=Nannochloropsis oceanica|type=mRNA|length=955bp
ATGGCTCGAGTGACCAGGCAGCACCCCTGGTCCATAGGGACCACGGGGCG
GGGGTGGGGAAGAAACGCGCCACCAGGAAGCAGACTACCAAAGCTTCCCC
ATTCCAAAAATTCCACTCCAACCCTTACATCTTCGCCCTGTTTTTATATC
TGATGGTGGATGGTCCCATTGACCTCACAGATGAAACCTTCGAGCATGGC
CGAGTGGATTGGTTTTCACCCTTTGATCTAAACGGCCGGCGCAACATCGC
CCTCCTCAAGTCCTGTGTCCAAAGACTACAGGCCCTAATCAAAAAACACT
ACCCTGCTTTTGTGCCTGCCTTCGCTGGGTTCACGGCGGACAAATGTAAG
ACCTACACTGACCAAATGTGGGTGAAGAGAAGCGGAGAAGAGGTAAAAGG
TGGGCTTGGTGGGGGGGGGAAGAACCTGAAAAGAGTCCCTCGCTTGGAGA
TGGAGATCCCTGAGCCCACGGTGCACGATGGGAGTCGTGTGACGGTGAAT
GGCAGCCCTGTCCTCGTCCGCACGCCCTACGAGGTGAGGGTATCTGAGTT
CCTCCACGAAAGCTACGTCACCATGACTACCGGAGAAATAGCCAGGCATT
ACTCTGGAGCAGGAGCATTTGCGGCGGAGGTACGGGAGTCAACCACCCAC
CACCACCCACACAACCATCCTTTCACACTGCAACACACACGGTTCACCAA
AAAAATCCGATAGGATGCTCCCGCTACACAAGATGGGACCCAGAATATGT
TCCACGCCCTCAAGAAAGGGTGTGACCGGTCGACCTCCAAATTGATCCAG
TTTCAGGACATCAAAGTGGACAAAATGCCAAAAAAACCACAGGCATACTA
CACTTGGCTCAAGGAGGAGTGTGGCCATAAGATGTCGCAGGAGGAGGCAA
AGGAACTAGCATACGGACTTGCTTACCAACTCGTCTTAGCGCGCTACTCG
GACAC
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protein sequence of jgi.p|Nanoce1779_2|579215

>mRNA_2134-protein ID=mRNA_2134-protein|Name=jgi.p|Nanoce1779_2|579215|organism=Nannochloropsis oceanica|type=polypeptide|length=187bp
MVDGPIDLTDETFEHGRVDWFSPFDLNGRRNIALLKSCVQRLQALIKKHY
PAFVPAFAGFTADKCKTYTDQMWVKRSGEEVKGGLGGGGKNLKRVPRLEM
EIPEPTVHDGSRVTVNGSPVLVRTPYEVRVSEFLHESYVTMTTGEIARHY
SGAGAFAAEVRESTTHHHPHNHPFTLQHTRFTKKIR*
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mRNA from alignment at scaffold_4:879481..880523+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2134 ID=mRNA_2134|Name=jgi.p|Nanoce1779_2|579215|organism=Nannochloropsis oceanica|type=mRNA|length=1043bp|location=Sequence derived from alignment at scaffold_4:879481..880523+ (Nannochloropsis oceanica)
ATGGCTCGAGTGACCAGGCAGCACCCCTGGTCCATAGGGACCACGGGGCG
GGGGTGGGGAAGAAACGCGCCACCAGGAAGCAGACTACCAAAGCTTCCCC
ATTCCAAAAATTCCACTCCAACCCTTACATCTTCGCCCTGTTTTTATATC
TGAGTAAGTGATGATGTGGCTGTGTGAGTGACATGTCTGTGCATTTGTGT
TTCCGTTCTTAACTCACACAACTACCCCACCACATCCTCAGTGGTGGATG
GTCCCATTGACCTCACAGATGAAACCTTCGAGCATGGCCGAGTGGATTGG
TTTTCACCCTTTGATCTAAACGGCCGGCGCAACATCGCCCTCCTCAAGTC
CTGTGTCCAAAGACTACAGGCCCTAATCAAAAAACACTACCCTGCTTTTG
TGCCTGCCTTCGCTGGGTTCACGGCGGACAAATGTAAGACCTACACTGAC
CAAATGTGGGTGAAGAGAAGCGGAGAAGAGGTAAAAGGTGGGCTTGGTGG
GGGGGGGAAGAACCTGAAAAGAGTCCCTCGCTTGGAGATGGAGATCCCTG
AGCCCACGGTGCACGATGGGAGTCGTGTGACGGTGAATGGCAGCCCTGTC
CTCGTCCGCACGCCCTACGAGGTGAGGGTATCTGAGTTCCTCCACGAAAG
CTACGTCACCATGACTACCGGAGAAATAGCCAGGCATTACTCTGGAGCAG
GAGCATTTGCGGCGGAGGTACGGGAGTCAACCACCCACCACCACCCACAC
AACCATCCTTTCACACTGCAACACACACGGTTCACCAAAAAAATCCGATA
GGATGCTCCCGCTACACAAGATGGGACCCAGAATATGTTCCACGCCCTCA
AGAAAGGGTGTGACCGGTCGACCTCCAAATTGATCCAGTTTCAGGACATC
AAAGTGGACAAAATGCCAAAAAAACCACAGGCATACTACACTTGGCTCAA
GGAGGAGTGTGGCCATAAGATGTCGCAGGAGGAGGCAAAGGAACTAGCAT
ACGGACTTGCTTACCAACTCGTCTTAGCGCGCTACTCGGACAC
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Coding sequence (CDS) from alignment at scaffold_4:879481..880523+

>mRNA_2134 ID=mRNA_2134|Name=jgi.p|Nanoce1779_2|579215|organism=Nannochloropsis oceanica|type=CDS|length=1122bp|location=Sequence derived from alignment at scaffold_4:879481..880523+ (Nannochloropsis oceanica)
ATGGTGGATGGTCCCATTGACCTCACAGATGAAACCTTCGAGCATGGCCG
AGTGGATTGGTTTTCACCCTTTGATCTAAACGGCCGGCGCAACATCGCCC
TCCTCAAGTCCTGTGTCCAAAGACTACAGGCCCTAATCAAAAAACACTAC
CCTGCTTTTGTGCCTGCCTTCGCTGGGTTCACGGCGGACAAATGTAAGAC
CTACACTGACCAAATGTGGGTGAAGAGAAGCGGAGAAGAGGTAAAAGGTG
GGCTTGGTGGGGGGGGGAAGAACCTGAAAAGAGTCCCTCGCTTGGAGATG
GAGATCCCTGAGCCCACGGTGCACGATGGGAGTCGTGTGACGGTGAATGG
CAGCCCTGTCCTCGTCCGCACGCCCTACGAGGTGAGGGTATCTGAGTTCC
TCCACGAAAGCTACGTCACCATGACTACCGGAGAAATAGCCAGGCATTAC
TCTGGAGCAGGAGCATTTGCGGCGGAGGTACGGGAGTCAACCACCCACCA
CCACCCACACAACCATCCTTTCACACTGCAACACACACGGTTCACCAAAA
AAATCCGATAGATGGTGGATGGTCCCATTGACCTCACAGATGAAACCTTC
GAGCATGGCCGAGTGGATTGGTTTTCACCCTTTGATCTAAACGGCCGGCG
CAACATCGCCCTCCTCAAGTCCTGTGTCCAAAGACTACAGGCCCTAATCA
AAAAACACTACCCTGCTTTTGTGCCTGCCTTCGCTGGGTTCACGGCGGAC
AAATGTAAGACCTACACTGACCAAATGTGGGTGAAGAGAAGCGGAGAAGA
GGTAAAAGGTGGGCTTGGTGGGGGGGGGAAGAACCTGAAAAGAGTCCCTC
GCTTGGAGATGGAGATCCCTGAGCCCACGGTGCACGATGGGAGTCGTGTG
ACGGTGAATGGCAGCCCTGTCCTCGTCCGCACGCCCTACGAGGTGAGGGT
ATCTGAGTTCCTCCACGAAAGCTACGTCACCATGACTACCGGAGAAATAG
CCAGGCATTACTCTGGAGCAGGAGCATTTGCGGCGGAGGTACGGGAGTCA
ACCACCCACCACCACCCACACAACCATCCTTTCACACTGCAACACACACG
GTTCACCAAAAAAATCCGATAG
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Synonyms
Publications