jgi.p|Nanoce1779_2|579754, mRNA_2287 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579754
Unique NamemRNA_2287
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length645
Alignment locationscaffold_4:1282899..1283742 +

Link to JBrowse

Properties
Property NameValue
TranscriptId579840
TrackFilteredModels2
ProteinId579754
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:1282899..1283742 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579754gene_2287Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579754mRNA_2287-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2287CDS_2287Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2287 ID=mRNA_2287|Name=jgi.p|Nanoce1779_2|579754|organism=Nannochloropsis oceanica|type=mRNA|length=645bp
TCCGGTTGGGACATAGCCAAGACCGAAGCAAAGCGTTGGATGAGCGTCGT
CCTTTTCCTCCCAATCTATTGGCTTCTGAGCTGGATTCCTTTGGTGGGCC
GCGGGCTCAAGTTTATATTCAAGCTCTACACTCTCTCCCGCTACCTCTCC
CCCTCGCATACTGTCGCCGCTGCCGTCATCACCACCTTCCCCCTCACTGA
ATACCCCTCCACTCTCCTCCTCTCCTTTCTTCTCTCCCTCACCGCCTCCT
TGCAAGAACTCAATCTCCCCTACCTTGGGCGGCAGCAACCCCCCCTCTCC
CGCCGCGCCGAGCTCGCCTTGTTGGTGCGTGAAAATCCTCAGAAGGTCGC
AGCGCTTGCCTTTGTGTTACCATTTACCCTTGTTTTGATGATTCCAATTT
TGGGGCCCCTTAGCATCATAATTGCACATGCAGCGGCACCTGTGGCCTTA
GTAAAGTTGGTGTTGCCACAGAGGAAGAAGGAGGAGGGGGGAAGAGGTAA
AGGGAATGCGAAAGAGGAGGTAGAGGAGAAAAAGAAGGCAAAGTAGGGAG
TGTACATAGCGAACCGTATAGAAAGAGAAGTAAAGCAAGTTACATTGTGA
AACAGAAGCCGAATACTCATTCCATCCATTCACTTGTGATTCTAG
back to top

protein sequence of jgi.p|Nanoce1779_2|579754

>mRNA_2287-protein ID=mRNA_2287-protein|Name=jgi.p|Nanoce1779_2|579754|organism=Nannochloropsis oceanica|type=polypeptide|length=169bp
MSVVLFLPIYWLLSWIPLVGRGLKFIFKLYTLSRYLSPSHTVAAAVITTF
PLTEYPSTLLLSFLLSLTASLQELNLPYLGRQQPPLSRRAELALLVRENP
QKVAALAFVLPFTLVLMIPILGPLSIIIAHAAAPVALVKLVLPQRKKEEG
GRGKGNAKEEVEEKKKAK*
back to top

mRNA from alignment at scaffold_4:1282899..1283742+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2287 ID=mRNA_2287|Name=jgi.p|Nanoce1779_2|579754|organism=Nannochloropsis oceanica|type=mRNA|length=844bp|location=Sequence derived from alignment at scaffold_4:1282899..1283742+ (Nannochloropsis oceanica)
TCCGGTTGGGACATAGCCAAGACCGAAGCAAAGCGTTGGATGAGCGTCGT
CCTTTTCCTCCCAATCTATTGGCTTCTGAGCTGGATTCCTTTGGTGGGCC
GCGGGCTCAAGTTTATATTCAAGGTTCGTGGGGTGGAGGATGGTGGTCGA
TACAAGAAGAAGTGGGGAAGAGCAGGGGAAAGGAAGTACCGAACGTCCTT
TTTTCACTGATGCCAGAAGCGATAGACTTAGAGCTTGAGTGACTGACATG
TGTATTCGCTTTGAGACATTGTGAGAGCACACATTCGACAATTCACTGTC
CAAACCCCCACTCAAACCACAGCTCTACACTCTCTCCCGCTACCTCTCCC
CCTCGCATACTGTCGCCGCTGCCGTCATCACCACCTTCCCCCTCACTGAA
TACCCCTCCACTCTCCTCCTCTCCTTTCTTCTCTCCCTCACCGCCTCCTT
GCAAGAACTCAATCTCCCCTACCTTGGGCGGCAGCAACCCCCCCTCTCCC
GCCGCGCCGAGCTCGCCTTGTTGGTGCGTGAAAATCCTCAGAAGGTCGCA
GCGCTTGCCTTTGTGTTACCATTTACCCTTGTTTTGATGATTCCAATTTT
GGGGCCCCTTAGCATCATAATTGCACATGCAGCGGCACCTGTGGCCTTAG
TAAAGTTGGTGTTGCCACAGAGGAAGAAGGAGGAGGGGGGAAGAGGTAAA
GGGAATGCGAAAGAGGAGGTAGAGGAGAAAAAGAAGGCAAAGTAGGGAGT
GTACATAGCGAACCGTATAGAAAGAGAAGTAAAGCAAGTTACATTGTGAA
ACAGAAGCCGAATACTCATTCCATCCATTCACTTGTGATTCTAG
back to top

Coding sequence (CDS) from alignment at scaffold_4:1282899..1283742+

>mRNA_2287 ID=mRNA_2287|Name=jgi.p|Nanoce1779_2|579754|organism=Nannochloropsis oceanica|type=CDS|length=1014bp|location=Sequence derived from alignment at scaffold_4:1282899..1283742+ (Nannochloropsis oceanica)
ATGAGCGTCGTCCTTTTCCTCCCAATCTATTGGCTTCTGAGCTGGATTCC
TTTGGTGGGCCGCGGGCTCAAGTTTATATTCAAGCTCTACACTCTCTCCC
GCTACCTCTCCCCCTCGCATACTGTCGCCGCTGCCGTCATCACCACCTTC
CCCCTCACTGAATACCCCTCCACTCTCCTCCTCTCCTTTCTTCTCTCCCT
CACCGCCTCCTTGCAAGAACTCAATCTCCCCTACCTTGGGCGGCAGCAAC
CCCCCCTCTCCCGCCGCGCCGAGCTCGCCTTGTTGGTGCGTGAAAATCCT
CAGAAGGTCGCAGCGCTTGCCTTTGTGTTACCATTTACCCTTGTTTTGAT
GATTCCAATTTTGGGGCCCCTTAGCATCATAATTGCACATGCAGCGGCAC
CTGTGGCCTTAGTAAAGTTGGTGTTGCCACAGAGGAAGAAGGAGGAGGGG
GGAAGAGGTAAAGGGAATGCGAAAGAGGAGGTAGAGGAGAAAAAGAAGGC
AAAGTAGATGAGCGTCGTCCTTTTCCTCCCAATCTATTGGCTTCTGAGCT
GGATTCCTTTGGTGGGCCGCGGGCTCAAGTTTATATTCAAGCTCTACACT
CTCTCCCGCTACCTCTCCCCCTCGCATACTGTCGCCGCTGCCGTCATCAC
CACCTTCCCCCTCACTGAATACCCCTCCACTCTCCTCCTCTCCTTTCTTC
TCTCCCTCACCGCCTCCTTGCAAGAACTCAATCTCCCCTACCTTGGGCGG
CAGCAACCCCCCCTCTCCCGCCGCGCCGAGCTCGCCTTGTTGGTGCGTGA
AAATCCTCAGAAGGTCGCAGCGCTTGCCTTTGTGTTACCATTTACCCTTG
TTTTGATGATTCCAATTTTGGGGCCCCTTAGCATCATAATTGCACATGCA
GCGGCACCTGTGGCCTTAGTAAAGTTGGTGTTGCCACAGAGGAAGAAGGA
GGAGGGGGGAAGAGGTAAAGGGAATGCGAAAGAGGAGGTAGAGGAGAAAA
AGAAGGCAAAGTAG
back to top
Synonyms
Publications