jgi.p|Nanoce1779_2|579351, mRNA_2174 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579351
Unique NamemRNA_2174
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1277
Alignment locationscaffold_4:966031..967400 -

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Properties
Property NameValue
TranscriptId579437
TrackFilteredModels2
ProteinId579351
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:966031..967400 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579351gene_2174Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579351mRNA_2174-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2174CDS_2174Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2174 ID=mRNA_2174|Name=jgi.p|Nanoce1779_2|579351|organism=Nannochloropsis oceanica|type=mRNA|length=1277bp
GGGGGACCCGGCAGGGGGAAGCAGGGCGAGGGAGGTGACACGACGTGATT
TTACAGTGGAATTATTCCAGCTTCCTGTAACAAATGAAACTGGTTCTGAA
TGTGTATTGGTAGTCGTTGTGCATCTTGTTGTACTTCTGCGAGTTAACAA
TGCGTTTCCATGCATCGTCCCTCACACGCACGCTCAAACCCACGACCACA
CCCGCACAGGCACACCATCTACTACATGAATATCGAGGTGGGCCGTAACA
AGTACTACTTGCGGAAGCGCTACACCGAGTTTCTCATGCTCCACCAGAGA
CTCTGCGAGCAGCAATACCCCGAAATTGAGGACTTTGACTTTCCTATTAA
GGTCTGGTTCAACAATTTCTCCGACGGTGTCATCGAATACCGGCGCACGC
GCTTCGAGGCCTACTTGACCCTGCTTCTGGAGCTAGTCAACAAGTACCCT
CCCCTCCGTAAGGAAGTAGAGAGCTTCCTCGGCGTACCTTCTGTCATTGA
TCCCCCGAAGAAATATCCTAAGACCCCAGTCCCAGGCCGCCGGGCGATCC
AGAAGCCTGCAGGGCTCCAAGACGACCCTACGGACTCCTCTTCTTCCACT
GCTTCTGCTGTTGCGCCTGCCGCAGGTCCTATTCGTTCATCTTTCCTCGC
CCGAAGACGTTCATCCAACTATGGAGATGATGATGGAGCTGCCGGACTTG
GGCGAGACAATTCGCCCACGGTGGTGACGGCGGGTGTGCGGGTCACCTCC
CCCACTCCAGTGGAAAGCAGTACTGTGGCGGCTGCGTGCTCCTACACGTG
TACGACAACCATCTTGGCTTATCTTTTTCTGTACATCTTCATTGTATTTT
TGCTGGCATTGGCTGCGGCATTAGAGCCTACTCATGCACGGGTGAGCGCT
CTGTCGATACTGGGCTTGTCTAGCGTGGCTTCCTTGGTGGTTATGCGCGC
TTTTTCGACTGCCTCGGCGCATGACGCCAGCAAGCACTCTAAGAGTGGAG
AAGGGAGAGGAAAGCGTGTATAGATAGGGAGAGATCGGGAGAAATCGTGT
ATGGCGGTACATACATGTATGAGAGTATGGGAAATGGTTTGGTGCATATT
GGTTATGTGTAAATGTGTACTATTTAATGAAAGAAGTGAAAGAGGGTGTG
CGAGTTGATCGTGTCCAGAGGGAGTGTCATACCCAAACAAGAAGTTGCAG
AGGGACTTGGCTGTGTTAATTAAAAAGCATTGGTACAAAGTGAAAATGAA
ATTGAAAGAAATTGATGTCTACAATGA
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protein sequence of jgi.p|Nanoce1779_2|579351

>mRNA_2174-protein ID=mRNA_2174-protein|Name=jgi.p|Nanoce1779_2|579351|organism=Nannochloropsis oceanica|type=polypeptide|length=288bp
MHRPSHARSNPRPHPHRHTIYYMNIEVGRNKYYLRKRYTEFLMLHQRLCE
QQYPEIEDFDFPIKVWFNNFSDGVIEYRRTRFEAYLTLLLELVNKYPPLR
KEVESFLGVPSVIDPPKKYPKTPVPGRRAIQKPAGLQDDPTDSSSSTASA
VAPAAGPIRSSFLARRRSSNYGDDDGAAGLGRDNSPTVVTAGVRVTSPTP
VESSTVAAACSYTCTTTILAYLFLYIFIVFLLALAAALEPTHARVSALSI
LGLSSVASLVVMRAFSTASAHDASKHSKSGEGRGKRV*
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mRNA from alignment at scaffold_4:966031..967400-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2174 ID=mRNA_2174|Name=jgi.p|Nanoce1779_2|579351|organism=Nannochloropsis oceanica|type=mRNA|length=1370bp|location=Sequence derived from alignment at scaffold_4:966031..967400- (Nannochloropsis oceanica)
GGGGGACCCGGCAGGGGGAAGCAGGGCGAGGGAGGTGACACGACGTGATT
TTACAGTGGAATTATTCCAGCTTCCTGTAACAAATGAAACTGGTTCTGAA
TGTGTATTGGTAGTCGTTGTGCATCTTGTTGTACTTCTGCGAGTTAACAA
TGCGTTTCCATGCATCGTCCCTCACACGCACGCTCAAACCCACGACCACA
CCCGCACAGGCACACCATCTACTACATGAATATCGAGGTGGGCCGTAACA
AGTACTACTTGCGGAAGCGCTACACCGAGTTTCTCATGCTCCACCAGGTA
CGTTTTCGTCTGCACTTCTTTCCTTCTCCTTCTCTTTGGTCCTTTTCCCC
TGTTTCATATCAAGTCACCATTCCATCCACCCTCACACAGAGACTCTGCG
AGCAGCAATACCCCGAAATTGAGGACTTTGACTTTCCTATTAAGGTCTGG
TTCAACAATTTCTCCGACGGTGTCATCGAATACCGGCGCACGCGCTTCGA
GGCCTACTTGACCCTGCTTCTGGAGCTAGTCAACAAGTACCCTCCCCTCC
GTAAGGAAGTAGAGAGCTTCCTCGGCGTACCTTCTGTCATTGATCCCCCG
AAGAAATATCCTAAGACCCCAGTCCCAGGCCGCCGGGCGATCCAGAAGCC
TGCAGGGCTCCAAGACGACCCTACGGACTCCTCTTCTTCCACTGCTTCTG
CTGTTGCGCCTGCCGCAGGTCCTATTCGTTCATCTTTCCTCGCCCGAAGA
CGTTCATCCAACTATGGAGATGATGATGGAGCTGCCGGACTTGGGCGAGA
CAATTCGCCCACGGTGGTGACGGCGGGTGTGCGGGTCACCTCCCCCACTC
CAGTGGAAAGCAGTACTGTGGCGGCTGCGTGCTCCTACACGTGTACGACA
ACCATCTTGGCTTATCTTTTTCTGTACATCTTCATTGTATTTTTGCTGGC
ATTGGCTGCGGCATTAGAGCCTACTCATGCACGGGTGAGCGCTCTGTCGA
TACTGGGCTTGTCTAGCGTGGCTTCCTTGGTGGTTATGCGCGCTTTTTCG
ACTGCCTCGGCGCATGACGCCAGCAAGCACTCTAAGAGTGGAGAAGGGAG
AGGAAAGCGTGTATAGATAGGGAGAGATCGGGAGAAATCGTGTATGGCGG
TACATACATGTATGAGAGTATGGGAAATGGTTTGGTGCATATTGGTTATG
TGTAAATGTGTACTATTTAATGAAAGAAGTGAAAGAGGGTGTGCGAGTTG
ATCGTGTCCAGAGGGAGTGTCATACCCAAACAAGAAGTTGCAGAGGGACT
TGGCTGTGTTAATTAAAAAGCATTGGTACAAAGTGAAAATGAAATTGAAA
GAAATTGATGTCTACAATGA
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Coding sequence (CDS) from alignment at scaffold_4:966031..967400-

>mRNA_2174 ID=mRNA_2174|Name=jgi.p|Nanoce1779_2|579351|organism=Nannochloropsis oceanica|type=CDS|length=1728bp|location=Sequence derived from alignment at scaffold_4:966031..967400- (Nannochloropsis oceanica)
AGACTCTGCGAGCAGCAATACCCCGAAATTGAGGACTTTGACTTTCCTAT
TAAGGTCTGGTTCAACAATTTCTCCGACGGTGTCATCGAATACCGGCGCA
CGCGCTTCGAGGCCTACTTGACCCTGCTTCTGGAGCTAGTCAACAAGTAC
CCTCCCCTCCGTAAGGAAGTAGAGAGCTTCCTCGGCGTACCTTCTGTCAT
TGATCCCCCGAAGAAATATCCTAAGACCCCAGTCCCAGGCCGCCGGGCGA
TCCAGAAGCCTGCAGGGCTCCAAGACGACCCTACGGACTCCTCTTCTTCC
ACTGCTTCTGCTGTTGCGCCTGCCGCAGGTCCTATTCGTTCATCTTTCCT
CGCCCGAAGACGTTCATCCAACTATGGAGATGATGATGGAGCTGCCGGAC
TTGGGCGAGACAATTCGCCCACGGTGGTGACGGCGGGTGTGCGGGTCACC
TCCCCCACTCCAGTGGAAAGCAGTACTGTGGCGGCTGCGTGCTCCTACAC
GTGTACGACAACCATCTTGGCTTATCTTTTTCTGTACATCTTCATTGTAT
TTTTGCTGGCATTGGCTGCGGCATTAGAGCCTACTCATGCACGGGTGAGC
GCTCTGTCGATACTGGGCTTGTCTAGCGTGGCTTCCTTGGTGGTTATGCG
CGCTTTTTCGACTGCCTCGGCGCATGACGCCAGCAAGCACTCTAAGAGTG
GAGAAGGGAGAGGAAAGCGTGTATAGATGCATCGTCCCTCACACGCACGC
TCAAACCCACGACCACACCCGCACAGGCACACCATCTACTACATGAATAT
CGAGGTGGGCCGTAACAAGTACTACTTGCGGAAGCGCTACACCGAGTTTC
TCATGCTCCACCAGAGACTCTGCGAGCAGCAATACCCCGAAATTGAGGAC
TTTGACTTTCCTATTAAGGTCTGGTTCAACAATTTCTCCGACGGTGTCAT
CGAATACCGGCGCACGCGCTTCGAGGCCTACTTGACCCTGCTTCTGGAGC
TAGTCAACAAGTACCCTCCCCTCCGTAAGGAAGTAGAGAGCTTCCTCGGC
GTACCTTCTGTCATTGATCCCCCGAAGAAATATCCTAAGACCCCAGTCCC
AGGCCGCCGGGCGATCCAGAAGCCTGCAGGGCTCCAAGACGACCCTACGG
ACTCCTCTTCTTCCACTGCTTCTGCTGTTGCGCCTGCCGCAGGTCCTATT
CGTTCATCTTTCCTCGCCCGAAGACGTTCATCCAACTATGGAGATGATGA
TGGAGCTGCCGGACTTGGGCGAGACAATTCGCCCACGGTGGTGACGGCGG
GTGTGCGGGTCACCTCCCCCACTCCAGTGGAAAGCAGTACTGTGGCGGCT
GCGTGCTCCTACACGTGTACGACAACCATCTTGGCTTATCTTTTTCTGTA
CATCTTCATTGTATTTTTGCTGGCATTGGCTGCGGCATTAGAGCCTACTC
ATGCACGGGTGAGCGCTCTGTCGATACTGGGCTTGTCTAGCGTGGCTTCC
TTGGTGGTTATGCGCGCTTTTTCGACTGCCTCGGCGCATGACGCCAGCAA
GCACTCTAAGAGTGGAGAAGGGAGAGGAAAGCGTGTATAGATGCATCGTC
CCTCACACGCACGCTCAAACCCACGACCACACCCGCACAGGCACACCATC
TACTACATGAATATCGAGGTGGGCCGTAACAAGTACTACTTGCGGAAGCG
CTACACCGAGTTTCTCATGCTCCACCAG
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Synonyms
Publications