jgi.p|Nanoce1779_2|579358, mRNA_2176 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|579358
Unique Name	mRNA_2176
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1806
Alignment location	scaffold_4:968812..970617 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	579444
Track	FilteredModels2
ProteinId	579358

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:968812..970617 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579358	gene_2176	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579358	mRNA_2176-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2176	CDS_2176	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:968812..970617-
coding sequence from alignment at scaffold_4:968812..970617-

mRNA sequence

>mRNA_2176 ID=mRNA_2176|Name=jgi.p|Nanoce1779_2|579358|organism=Nannochloropsis oceanica|type=mRNA|length=1806bp
AAACCACAGGAAGCCCTTGCTCGGCTTTTCAAGCTCGACAAGGAACCCAA
TAGGCTTTTCCCTCGACCCGCACATACAATCACTTCAACCGGCCAACCGC
TGCCTCATCAGCAAGCAGCACACCATGTCCGTCCACTGCAGTAGCCGCAG
AAAAAGACCAACAACAACGCACAGAAGCAGTGGCAGCAGCACGTCATTGC
CGCTGTTGCTGACGACGACACTGGGCTTGGCTGCGCTCTCCTCTGGCTTT
GTCTTACCTACCACACACTTGACGCCCTCGCACAGTTCCTCTACCCCCAC
CATCACCACCGTCTCGGCCTCATCCGCCGCAAGAATAGCACTCCTGCAAC
GCGCCTCCTCCACTATCGACAAAACGAGTTCTTCCTCTTCCACCAACACG
TCCGATGAACCAGCCCAAGATTCCACCGATTCCCTTGCCTCTCAATTTGA
GGCTTTCTACAACCGTGCCCTCGACGGGAAACCAGCCCAGCTCAAGTCCC
TCTTCGCCCCCGGGGCGACCTGGACTGGCGTCCCTTTGGCAGAAGGTGGG
GGTAGCTTGCAAGATTCATTAGACATGATAGATCAAGGGAGGGCATTTAT
GATTGAGCCGCGTATGGATGTGACAGGCGCCAGGCGTGACGGCGAGGGAA
GGGTGGCAGTTGACTGGCAGCTGTCGGGTACCTGGCCTTTCCCCTACCGA
CCCCGCGTCCGCGCTGCAGGGACATCCATCGTGACCTTGGACAAGAGCAC
CGGAAAAATCAAACAGGTGGAAGAAAAGTGGGATAAGCCCTGGTGGCGTG
TTGCCCTCGAGCAAGCCTCGCCTCGTGCATGGGACTTGTGGCACTTGTAT
CTTACCCCTCCGGCGGAAAAGTCACTTTATCGCGTCGTCAAAAAACTGGC
AGCGGTAGAGATCCGTGAGTATTACCCTCGGCTGGTACTTGAGTTGGAGC
AGCATGATGCCAGACCGGACATTCGGTTTACGGAATTGGCATGGGTGTTG
CCTGATTTTGCCTTTACGGATGAGTTGAAGCTGCAGGGGAAGGCACAATA
TCGAGAAACGTATGTCACGACCAGCCCAGTTGAAAGCTGTGTGGAGAGTG
TTGATTGGTCCCCTCCTTCCCCTCAACTAAGGGGCTTGCAAACTGCTTCC
AGTGTACCTGCAAAGAGAATTCGGCACCACGTGCCAGTTCCTTCTCATTT
AGGGCTTGATCCTGTCTCGAACCGCTTGCCTTCCCCTCCTGTGAAGGGGG
TGGAGACGGAGCAGGGGCAGGCTGGGAGGTATGTGCTGCAGCCGACTAGA
TACATGGCGGTGAGACGGTTTAAGGGTTGGACGCAGACGGACCAGTACTC
GACAGCACGACGGTGGTTATTAAAGTGGTGCGCAAAGGAGGGCCTCAAGA
CGACGAGAAATGAGATGGGCAAGTCGAGGGTATGGGTGCAGCAACATAAC
ATGAAGGCGGGGTTCAATATGGCGGGTGCTTTCTGTCTAGGTATTTACGA
ACAGCCGAGTTATTCGGATTGGGGCGAGATTGCGGTGGAGGTGGTGGAGG
AGGAGGGTTGGGCAAGAGGGAAGCGGGAGGGGATATAAGGATAGGCATTG
ATTGGACAACAAGATGAAGGGAGATGTATTCTATAAGGCTAATGCGACGC
CAAATATGTGGACGTGAGGTTGCCAAGGTGGGGAAAGGAAAAAAAGAGGC
AGCAGCAGCTGAAGAAAAGTAGAGGTTCACACGGAGAACCAAAGTTGGCT
TTTATATAACAGCATATTACGACGAAGCAAATCAAGTGGACGGGAGACTG
TCAAAC

protein sequence of jgi.p|Nanoce1779_2|579358

>mRNA_2176-protein ID=mRNA_2176-protein|Name=jgi.p|Nanoce1779_2|579358|organism=Nannochloropsis oceanica|type=polypeptide|length=488bp
MSVHCSSRRKRPTTTHRSSGSSTSLPLLLTTTLGLAALSSGFVLPTTHLT
PSHSSSTPTITTVSASSAARIALLQRASSTIDKTSSSSSTNTSDEPAQDS
TDSLASQFEAFYNRALDGKPAQLKSLFAPGATWTGVPLAEGGGSLQDSLD
MIDQGRAFMIEPRMDVTGARRDGEGRVAVDWQLSGTWPFPYRPRVRAAGT
SIVTLDKSTGKIKQVEEKWDKPWWRVALEQASPRAWDLWHLYLTPPAEKS
LYRVVKKLAAVEIREYYPRLVLELEQHDARPDIRFTELAWVLPDFAFTDE
LKLQGKAQYRETYVTTSPVESCVESVDWSPPSPQLRGLQTASSVPAKRIR
HHVPVPSHLGLDPVSNRLPSPPVKGVETEQGQAGRYVLQPTRYMAVRRFK
GWTQTDQYSTARRWLLKWCAKEGLKTTRNEMGKSRVWVQQHNMKAGFNMA
GAFCLGIYEQPSYSDWGEIAVEVVEEEGWARGKREGI*

mRNA from alignment at scaffold_4:968812..970617-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2176 ID=mRNA_2176|Name=jgi.p|Nanoce1779_2|579358|organism=Nannochloropsis oceanica|type=mRNA|length=1806bp|location=Sequence derived from alignment at scaffold_4:968812..970617- (Nannochloropsis oceanica)
AAACCACAGGAAGCCCTTGCTCGGCTTTTCAAGCTCGACAAGGAACCCAA
TAGGCTTTTCCCTCGACCCGCACATACAATCACTTCAACCGGCCAACCGC
TGCCTCATCAGCAAGCAGCACACCATGTCCGTCCACTGCAGTAGCCGCAG
AAAAAGACCAACAACAACGCACAGAAGCAGTGGCAGCAGCACGTCATTGC
CGCTGTTGCTGACGACGACACTGGGCTTGGCTGCGCTCTCCTCTGGCTTT
GTCTTACCTACCACACACTTGACGCCCTCGCACAGTTCCTCTACCCCCAC
CATCACCACCGTCTCGGCCTCATCCGCCGCAAGAATAGCACTCCTGCAAC
GCGCCTCCTCCACTATCGACAAAACGAGTTCTTCCTCTTCCACCAACACG
TCCGATGAACCAGCCCAAGATTCCACCGATTCCCTTGCCTCTCAATTTGA
GGCTTTCTACAACCGTGCCCTCGACGGGAAACCAGCCCAGCTCAAGTCCC
TCTTCGCCCCCGGGGCGACCTGGACTGGCGTCCCTTTGGCAGAAGGTGGG
GGTAGCTTGCAAGATTCATTAGACATGATAGATCAAGGGAGGGCATTTAT
GATTGAGCCGCGTATGGATGTGACAGGCGCCAGGCGTGACGGCGAGGGAA
GGGTGGCAGTTGACTGGCAGCTGTCGGGTACCTGGCCTTTCCCCTACCGA
CCCCGCGTCCGCGCTGCAGGGACATCCATCGTGACCTTGGACAAGAGCAC
CGGAAAAATCAAACAGGTGGAAGAAAAGTGGGATAAGCCCTGGTGGCGTG
TTGCCCTCGAGCAAGCCTCGCCTCGTGCATGGGACTTGTGGCACTTGTAT
CTTACCCCTCCGGCGGAAAAGTCACTTTATCGCGTCGTCAAAAAACTGGC
AGCGGTAGAGATCCGTGAGTATTACCCTCGGCTGGTACTTGAGTTGGAGC
AGCATGATGCCAGACCGGACATTCGGTTTACGGAATTGGCATGGGTGTTG
CCTGATTTTGCCTTTACGGATGAGTTGAAGCTGCAGGGGAAGGCACAATA
TCGAGAAACGTATGTCACGACCAGCCCAGTTGAAAGCTGTGTGGAGAGTG
TTGATTGGTCCCCTCCTTCCCCTCAACTAAGGGGCTTGCAAACTGCTTCC
AGTGTACCTGCAAAGAGAATTCGGCACCACGTGCCAGTTCCTTCTCATTT
AGGGCTTGATCCTGTCTCGAACCGCTTGCCTTCCCCTCCTGTGAAGGGGG
TGGAGACGGAGCAGGGGCAGGCTGGGAGGTATGTGCTGCAGCCGACTAGA
TACATGGCGGTGAGACGGTTTAAGGGTTGGACGCAGACGGACCAGTACTC
GACAGCACGACGGTGGTTATTAAAGTGGTGCGCAAAGGAGGGCCTCAAGA
CGACGAGAAATGAGATGGGCAAGTCGAGGGTATGGGTGCAGCAACATAAC
ATGAAGGCGGGGTTCAATATGGCGGGTGCTTTCTGTCTAGGTATTTACGA
ACAGCCGAGTTATTCGGATTGGGGCGAGATTGCGGTGGAGGTGGTGGAGG
AGGAGGGTTGGGCAAGAGGGAAGCGGGAGGGGATATAAGGATAGGCATTG
ATTGGACAACAAGATGAAGGGAGATGTATTCTATAAGGCTAATGCGACGC
CAAATATGTGGACGTGAGGTTGCCAAGGTGGGGAAAGGAAAAAAAGAGGC
AGCAGCAGCTGAAGAAAAGTAGAGGTTCACACGGAGAACCAAAGTTGGCT
TTTATATAACAGCATATTACGACGAAGCAAATCAAGTGGACGGGAGACTG
TCAAAC

Coding sequence (CDS) from alignment at scaffold_4:968812..970617-

>mRNA_2176 ID=mRNA_2176|Name=jgi.p|Nanoce1779_2|579358|organism=Nannochloropsis oceanica|type=CDS|length=1464bp|location=Sequence derived from alignment at scaffold_4:968812..970617- (Nannochloropsis oceanica)
ATGTCCGTCCACTGCAGTAGCCGCAGAAAAAGACCAACAACAACGCACAG
AAGCAGTGGCAGCAGCACGTCATTGCCGCTGTTGCTGACGACGACACTGG
GCTTGGCTGCGCTCTCCTCTGGCTTTGTCTTACCTACCACACACTTGACG
CCCTCGCACAGTTCCTCTACCCCCACCATCACCACCGTCTCGGCCTCATC
CGCCGCAAGAATAGCACTCCTGCAACGCGCCTCCTCCACTATCGACAAAA
CGAGTTCTTCCTCTTCCACCAACACGTCCGATGAACCAGCCCAAGATTCC
ACCGATTCCCTTGCCTCTCAATTTGAGGCTTTCTACAACCGTGCCCTCGA
CGGGAAACCAGCCCAGCTCAAGTCCCTCTTCGCCCCCGGGGCGACCTGGA
CTGGCGTCCCTTTGGCAGAAGGTGGGGGTAGCTTGCAAGATTCATTAGAC
ATGATAGATCAAGGGAGGGCATTTATGATTGAGCCGCGTATGGATGTGAC
AGGCGCCAGGCGTGACGGCGAGGGAAGGGTGGCAGTTGACTGGCAGCTGT
CGGGTACCTGGCCTTTCCCCTACCGACCCCGCGTCCGCGCTGCAGGGACA
TCCATCGTGACCTTGGACAAGAGCACCGGAAAAATCAAACAGGTGGAAGA
AAAGTGGGATAAGCCCTGGTGGCGTGTTGCCCTCGAGCAAGCCTCGCCTC
GTGCATGGGACTTGTGGCACTTGTATCTTACCCCTCCGGCGGAAAAGTCA
CTTTATCGCGTCGTCAAAAAACTGGCAGCGGTAGAGATCCGTGAGTATTA
CCCTCGGCTGGTACTTGAGTTGGAGCAGCATGATGCCAGACCGGACATTC
GGTTTACGGAATTGGCATGGGTGTTGCCTGATTTTGCCTTTACGGATGAG
TTGAAGCTGCAGGGGAAGGCACAATATCGAGAAACGTATGTCACGACCAG
CCCAGTTGAAAGCTGTGTGGAGAGTGTTGATTGGTCCCCTCCTTCCCCTC
AACTAAGGGGCTTGCAAACTGCTTCCAGTGTACCTGCAAAGAGAATTCGG
CACCACGTGCCAGTTCCTTCTCATTTAGGGCTTGATCCTGTCTCGAACCG
CTTGCCTTCCCCTCCTGTGAAGGGGGTGGAGACGGAGCAGGGGCAGGCTG
GGAGGTATGTGCTGCAGCCGACTAGATACATGGCGGTGAGACGGTTTAAG
GGTTGGACGCAGACGGACCAGTACTCGACAGCACGACGGTGGTTATTAAA
GTGGTGCGCAAAGGAGGGCCTCAAGACGACGAGAAATGAGATGGGCAAGT
CGAGGGTATGGGTGCAGCAACATAACATGAAGGCGGGGTTCAATATGGCG
GGTGCTTTCTGTCTAGGTATTTACGAACAGCCGAGTTATTCGGATTGGGG
CGAGATTGCGGTGGAGGTGGTGGAGGAGGAGGGTTGGGCAAGAGGGAAGC
GGGAGGGGATATAA

Synonyms

Publications