jgi.p|Nanoce1779_2|311611, mRNA_10156 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|311611
Unique NamemRNA_10156
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1095
Alignment locationscaffold_43:177640..178734 -

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Properties
Property NameValue
TranscriptId311697
TrackFilteredModels2
ProteinId311611
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_43supercontigscaffold_43:177640..178734 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|311611gene_10156Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|311611mRNA_10156-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10156CDS_10156Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10156 ID=mRNA_10156|Name=jgi.p|Nanoce1779_2|311611|organism=Nannochloropsis oceanica|type=mRNA|length=1095bp
TCTCTTTATGACTCTCGGTCTCTCCCTCCTCCCTCCCTCCATTCCTTTCT
CCTTTTCTTGTCTCCTTGCTCTTGTTATCTTGCTCTTGGTTCTCACGTTG
TGGTCTACTCTACCCTATACCCTACCATCTCTCCCTAAGGGAATCAATAC
ATGACCGACATTGTCTTGAAATAATTCTTACATACATATTTCGACTTAGA
AATCGTTTGTATCATTTCACTCTTCACTCTTATTGCGCCAGCATCAGAGA
CGCCCGCACTGGACTCAATGACTTCATCTTTCTCTCCTCTCCTCTCTCTC
GCTCCTTCTCCTCCACCAACCCAGCCACACTCGTCGCCGGGGGCAGCAAT
TCCAGCAAAGGCTCATGATCCTCTTTCCCGTATTTTCCCTTCCTCCTTTC
CCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCTCCCTC
CTCCCCCGGTGCACAGGACCGAAGTCTCATCCCCAACAGTCGTCGTGGGC
GACCAACACTCACTTTTCCCCCTCCTCCCCTTCCTGCTTCCCCCCTTCCT
CCTCCTCCGCTTGCCTCCCTCCTGCCTGAACCCACTCGACCCCATGAGCT
CTTCCAGGGTTATCCGCTCTTTACGTCCGCACAGAGCATCCGACACAGCA
GGTTGGGGAGGGAAGGAGGGAGCACCAGCCCATATTCCTGGCGTAGTACG
AGAGGAGGCCAGGGGCGGGCCGTTGAGAGCCAGGAGGTGAAATGCCTCGT
CGGTCGGGCCTCGGTAGAGAGGCCGGCCGGTGAGGAGCATGTACAAACAG
ACGCCCAAGGACCAGACATCCGCTGCGTGAGGATCGAAGAAGGAGGAGGA
GGGCCCGTGGGGTGTTGTTATAGACGCATTCCGGGGCAGCGTAGCTGGGC
TTGCCCCCTGAAGGGCCAGGGGAGGAAGGGAAGGGAGGAGGGTGGAGGAG
GGAGAGTGGTAGGACGGGGTATTAGCGCGCCATTTCGAGGTCGATGAGAC
GGCAGTGGAGGTTGGCCAAGGTCTCCCTTCCTCCTCCCTTCCTCCTTCTT
CTGAACCTCTGCAGCACCAGCCGCAGCGCTCTTCCTCCTCTTGTT
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protein sequence of jgi.p|Nanoce1779_2|311611

>mRNA_10156-protein ID=mRNA_10156-protein|Name=jgi.p|Nanoce1779_2|311611|organism=Nannochloropsis oceanica|type=polypeptide|length=211bp
MILFPVFSLPPFPLLLLLLLLLLLLLPPSSPGAQDRSLIPNSRRGRPTLT
FPPPPLPASPLPPPPLASLLPEPTRPHELFQGYPLFTSAQSIRHSRLGRE
GGSTSPYSWRSTRGGQGRAVESQEVKCLVGRASVERPAGEEHVQTDAQGP
DIRCVRIEEGGGGPVGCCYRRIPGQRSWACPLKGQGRKGREEGGGGRVVG
RGISAPFRGR*
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mRNA from alignment at scaffold_43:177640..178734-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10156 ID=mRNA_10156|Name=jgi.p|Nanoce1779_2|311611|organism=Nannochloropsis oceanica|type=mRNA|length=1095bp|location=Sequence derived from alignment at scaffold_43:177640..178734- (Nannochloropsis oceanica)
TCTCTTTATGACTCTCGGTCTCTCCCTCCTCCCTCCCTCCATTCCTTTCT
CCTTTTCTTGTCTCCTTGCTCTTGTTATCTTGCTCTTGGTTCTCACGTTG
TGGTCTACTCTACCCTATACCCTACCATCTCTCCCTAAGGGAATCAATAC
ATGACCGACATTGTCTTGAAATAATTCTTACATACATATTTCGACTTAGA
AATCGTTTGTATCATTTCACTCTTCACTCTTATTGCGCCAGCATCAGAGA
CGCCCGCACTGGACTCAATGACTTCATCTTTCTCTCCTCTCCTCTCTCTC
GCTCCTTCTCCTCCACCAACCCAGCCACACTCGTCGCCGGGGGCAGCAAT
TCCAGCAAAGGCTCATGATCCTCTTTCCCGTATTTTCCCTTCCTCCTTTC
CCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCTCCCTC
CTCCCCCGGTGCACAGGACCGAAGTCTCATCCCCAACAGTCGTCGTGGGC
GACCAACACTCACTTTTCCCCCTCCTCCCCTTCCTGCTTCCCCCCTTCCT
CCTCCTCCGCTTGCCTCCCTCCTGCCTGAACCCACTCGACCCCATGAGCT
CTTCCAGGGTTATCCGCTCTTTACGTCCGCACAGAGCATCCGACACAGCA
GGTTGGGGAGGGAAGGAGGGAGCACCAGCCCATATTCCTGGCGTAGTACG
AGAGGAGGCCAGGGGCGGGCCGTTGAGAGCCAGGAGGTGAAATGCCTCGT
CGGTCGGGCCTCGGTAGAGAGGCCGGCCGGTGAGGAGCATGTACAAACAG
ACGCCCAAGGACCAGACATCCGCTGCGTGAGGATCGAAGAAGGAGGAGGA
GGGCCCGTGGGGTGTTGTTATAGACGCATTCCGGGGCAGCGTAGCTGGGC
TTGCCCCCTGAAGGGCCAGGGGAGGAAGGGAAGGGAGGAGGGTGGAGGAG
GGAGAGTGGTAGGACGGGGTATTAGCGCGCCATTTCGAGGTCGATGAGAC
GGCAGTGGAGGTTGGCCAAGGTCTCCCTTCCTCCTCCCTTCCTCCTTCTT
CTGAACCTCTGCAGCACCAGCCGCAGCGCTCTTCCTCCTCTTGTT
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Coding sequence (CDS) from alignment at scaffold_43:177640..178734-

>mRNA_10156 ID=mRNA_10156|Name=jgi.p|Nanoce1779_2|311611|organism=Nannochloropsis oceanica|type=CDS|length=633bp|location=Sequence derived from alignment at scaffold_43:177640..178734- (Nannochloropsis oceanica)
ATGATCCTCTTTCCCGTATTTTCCCTTCCTCCTTTCCCCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCCTCCCTCCTCCCCCGGTGCAC
AGGACCGAAGTCTCATCCCCAACAGTCGTCGTGGGCGACCAACACTCACT
TTTCCCCCTCCTCCCCTTCCTGCTTCCCCCCTTCCTCCTCCTCCGCTTGC
CTCCCTCCTGCCTGAACCCACTCGACCCCATGAGCTCTTCCAGGGTTATC
CGCTCTTTACGTCCGCACAGAGCATCCGACACAGCAGGTTGGGGAGGGAA
GGAGGGAGCACCAGCCCATATTCCTGGCGTAGTACGAGAGGAGGCCAGGG
GCGGGCCGTTGAGAGCCAGGAGGTGAAATGCCTCGTCGGTCGGGCCTCGG
TAGAGAGGCCGGCCGGTGAGGAGCATGTACAAACAGACGCCCAAGGACCA
GACATCCGCTGCGTGAGGATCGAAGAAGGAGGAGGAGGGCCCGTGGGGTG
TTGTTATAGACGCATTCCGGGGCAGCGTAGCTGGGCTTGCCCCCTGAAGG
GCCAGGGGAGGAAGGGAAGGGAGGAGGGTGGAGGAGGGAGAGTGGTAGGA
CGGGGTATTAGCGCGCCATTTCGAGGTCGATGA
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Synonyms
Publications