jgi.p|Nanoce1779_2|633906, mRNA_10276 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|633906
Unique Name	mRNA_10276
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	970
Alignment location	scaffold_47:123923..124892 -

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Properties


Property Name	Value
TranscriptId	633992
Track	FilteredModels2
ProteinId	633906

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_47	supercontig	scaffold_47:123923..124892 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|633906	gene_10276	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|633906	mRNA_10276-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10276	CDS_10276	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_47:123923..124892-
coding sequence from alignment at scaffold_47:123923..124892-

mRNA sequence

>mRNA_10276 ID=mRNA_10276|Name=jgi.p|Nanoce1779_2|633906|organism=Nannochloropsis oceanica|type=mRNA|length=970bp
CCCTGACGGTCTACTCTCGCTTGAGCCAGGCAGGATTATACTACGCATCG
CTGTCCTCTTCCTCCCTCCCTCCCTTCCTTCCTTCCTCATCCTCCTCGAG
ACAGCAGTTGGTCGAGCGGTTCTTAATGCTGGTCCGGAGGTATCGGGAGC
AGTGCTTGGGGGAGGGAGGGGGGCAGGGAGGGATGGAAGAAGGGATGGCG
ATGATGACGACGCCTGAGGCATGGGCCTTGATGAAGAACATGAGGATAGG
ATTGGAGGAGAGGGGGTGGAGGTGCGAGGGTGAAGGGGAGGGAGGAGGGG
AGGGAGGGAGGGGGAGGGTGGGGTGGCTTGGAGAGCCGGATTTGGTGATT
TTGAAGCCGGGGAGGGAGGGAGGGAGGGAGGGGGAGGGGGAGGCGATTGC
GGTTATGGTTGTATCGCCTGGGCAGTACTTTCAAGGTGGCGTTGAATACG
ACGAGGAAGAGGAAGGGGAAAGGGAGGGGGAGGGCGGGAAGGAGGGAGGG
GCGGAAGTCGTCTTTGATGCGGGTAAGGCCGTTGGGGGCAGCAGCCTTCC
GGTGGAGGGTGCTGAAGAGGGAATGGAGGAGGGGAAAGGTGGTGGTGGTC
ACCCCCGAGTCGTGGGAGGCGTTCGTGGGAAGGGAGGGGGTGAAGGAGCG
GGAGAGAAGGGAGGGTGTAGGTCAGGGGAGGGTGGCGCGAGCGTGAGGGA
GGGAGGGGGGGAGGGGGGGAGTTGTAGAAATGAGTGGAAGAGCACAAGAG
GAGAGAGGAAATGAAAAATGAGTGTCGGAAGACTCCAAGAAATGGGAAGA
GAGATAGTGCATGAAGGGTGTAAGGAAAAAGAATAGCCAGCATAGACGAG
AGCGACTCTTGCTGCCCTCGTTCTTCAATCGTCACTACGACCACCCGCCA
CTCGATTTTCTTTTTTTTTTCCTTCCTCCTCCTCCTCCTCCTCCTCCCCC
TCGAATAAGTTTCTCCTCCT

protein sequence of jgi.p|Nanoce1779_2|633906

>mRNA_10276-protein ID=mRNA_10276-protein|Name=jgi.p|Nanoce1779_2|633906|organism=Nannochloropsis oceanica|type=polypeptide|length=213bp
MLVRRYREQCLGEGGGQGGMEEGMAMMTTPEAWALMKNMRIGLEERGWRC
EGEGEGGGEGGRGRVGWLGEPDLVILKPGREGGREGEGEAIAVMVVSPGQ
YFQGGVEYDEEEEGEREGEGGKEGGAEVVFDAGKAVGGSSLPVEGAEEGM
EEGKGGGGHPRVVGGVRGKGGGEGAGEKGGCRSGEGGASVREGGGEGGSC
RNEWKSTRGERK*

mRNA from alignment at scaffold_47:123923..124892-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10276 ID=mRNA_10276|Name=jgi.p|Nanoce1779_2|633906|organism=Nannochloropsis oceanica|type=mRNA|length=970bp|location=Sequence derived from alignment at scaffold_47:123923..124892- (Nannochloropsis oceanica)
CCCTGACGGTCTACTCTCGCTTGAGCCAGGCAGGATTATACTACGCATCG
CTGTCCTCTTCCTCCCTCCCTCCCTTCCTTCCTTCCTCATCCTCCTCGAG
ACAGCAGTTGGTCGAGCGGTTCTTAATGCTGGTCCGGAGGTATCGGGAGC
AGTGCTTGGGGGAGGGAGGGGGGCAGGGAGGGATGGAAGAAGGGATGGCG
ATGATGACGACGCCTGAGGCATGGGCCTTGATGAAGAACATGAGGATAGG
ATTGGAGGAGAGGGGGTGGAGGTGCGAGGGTGAAGGGGAGGGAGGAGGGG
AGGGAGGGAGGGGGAGGGTGGGGTGGCTTGGAGAGCCGGATTTGGTGATT
TTGAAGCCGGGGAGGGAGGGAGGGAGGGAGGGGGAGGGGGAGGCGATTGC
GGTTATGGTTGTATCGCCTGGGCAGTACTTTCAAGGTGGCGTTGAATACG
ACGAGGAAGAGGAAGGGGAAAGGGAGGGGGAGGGCGGGAAGGAGGGAGGG
GCGGAAGTCGTCTTTGATGCGGGTAAGGCCGTTGGGGGCAGCAGCCTTCC
GGTGGAGGGTGCTGAAGAGGGAATGGAGGAGGGGAAAGGTGGTGGTGGTC
ACCCCCGAGTCGTGGGAGGCGTTCGTGGGAAGGGAGGGGGTGAAGGAGCG
GGAGAGAAGGGAGGGTGTAGGTCAGGGGAGGGTGGCGCGAGCGTGAGGGA
GGGAGGGGGGGAGGGGGGGAGTTGTAGAAATGAGTGGAAGAGCACAAGAG
GAGAGAGGAAATGAAAAATGAGTGTCGGAAGACTCCAAGAAATGGGAAGA
GAGATAGTGCATGAAGGGTGTAAGGAAAAAGAATAGCCAGCATAGACGAG
AGCGACTCTTGCTGCCCTCGTTCTTCAATCGTCACTACGACCACCCGCCA
CTCGATTTTCTTTTTTTTTTCCTTCCTCCTCCTCCTCCTCCTCCTCCCCC
TCGAATAAGTTTCTCCTCCT

Coding sequence (CDS) from alignment at scaffold_47:123923..124892-

>mRNA_10276 ID=mRNA_10276|Name=jgi.p|Nanoce1779_2|633906|organism=Nannochloropsis oceanica|type=CDS|length=639bp|location=Sequence derived from alignment at scaffold_47:123923..124892- (Nannochloropsis oceanica)
ATGCTGGTCCGGAGGTATCGGGAGCAGTGCTTGGGGGAGGGAGGGGGGCA
GGGAGGGATGGAAGAAGGGATGGCGATGATGACGACGCCTGAGGCATGGG
CCTTGATGAAGAACATGAGGATAGGATTGGAGGAGAGGGGGTGGAGGTGC
GAGGGTGAAGGGGAGGGAGGAGGGGAGGGAGGGAGGGGGAGGGTGGGGTG
GCTTGGAGAGCCGGATTTGGTGATTTTGAAGCCGGGGAGGGAGGGAGGGA
GGGAGGGGGAGGGGGAGGCGATTGCGGTTATGGTTGTATCGCCTGGGCAG
TACTTTCAAGGTGGCGTTGAATACGACGAGGAAGAGGAAGGGGAAAGGGA
GGGGGAGGGCGGGAAGGAGGGAGGGGCGGAAGTCGTCTTTGATGCGGGTA
AGGCCGTTGGGGGCAGCAGCCTTCCGGTGGAGGGTGCTGAAGAGGGAATG
GAGGAGGGGAAAGGTGGTGGTGGTCACCCCCGAGTCGTGGGAGGCGTTCG
TGGGAAGGGAGGGGGTGAAGGAGCGGGAGAGAAGGGAGGGTGTAGGTCAG
GGGAGGGTGGCGCGAGCGTGAGGGAGGGAGGGGGGGAGGGGGGGAGTTGT
AGAAATGAGTGGAAGAGCACAAGAGGAGAGAGGAAATGA

Synonyms

Publications