jgi.p|Nanoce1779_2|320674, mRNA_10287 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|320674
Unique NamemRNA_10287
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length730
Alignment locationscaffold_47:152802..153645 +

Link to JBrowse

Properties
Property NameValue
TranscriptId320760
TrackFilteredModels2
ProteinId320674
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_47supercontigscaffold_47:152802..153645 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|320674gene_10287Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|320674mRNA_10287-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10287CDS_10287Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10287 ID=mRNA_10287|Name=jgi.p|Nanoce1779_2|320674|organism=Nannochloropsis oceanica|type=mRNA|length=730bp
TATTGATACCACACACACACCCCGTACAATGCACGTCAGCCGCCTTGGAC
ACATGCAAATTATAGTATGAGAAGAATATGTTGAGTGCTGGATGCATGGT
GATGCCTGTAGTAGTGCATTGCAGATGGGAAAAGGCAGCCAGGCAAGCCA
CTGAGGTAAAAGCATGCCTTCTTGCTCTGTTGGTGATGATTCATGCCGTG
CTGTAGCCTTTTCTCTTCCCGGCACCCTTGTCACCTACGCCACGGCTTGA
AATGCACACAGCATGCGGCCCCTAAAGCAAGAAAGCAGGCCAGCTGTGGG
CATTCACAAAGTCCATGTCCTCATCGGCCATGTCCCGCGTTCCATCTGTC
CTCGGATCTCGCCCCTCTTCCTCCCGGCGCCACCTCCTCCGACCAATCCG
CCCTTTCAGCACGACCCGTTGTCCCACAAAAACAGCCTCCCCCCGGAACC
TACGCCTGGAGGGATCTCCCCTACCATAACCCCCTCTCCCCCACCCCCCC
CACCCCAAACACCACCTCGACATCTTTATTTCCTCTTCCGGGCCTTTTCC
TCGTCCCACGCAGCCCGTCCTTGTATTCGTGCACGGCGGGCTGTGGATAC
GTGGCGACCGACAACATCCTTCTAAGCCTGGACTCTACGAAAACGTGGGT
GTAGCATGCGCTCGCGCTGGGATTGTAGGTGTGATTATCTCTTATCGACT
GGCGCCTGATGTGCTAGTTTTTGATCAGAT
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protein sequence of jgi.p|Nanoce1779_2|320674

>mRNA_10287-protein ID=mRNA_10287-protein|Name=jgi.p|Nanoce1779_2|320674|organism=Nannochloropsis oceanica|type=polypeptide|length=154bp
MPCCSLFSSRHPCHLRHGLKCTQHAAPKARKQASCGHSQSPCPHRPCPAF
HLSSDLAPLPPGATSSDQSALSARPVVPQKQPPPGTYAWRDLPYHNPLSP
TPPTPNTTSTSLFPLPGLFLVPRSPSLYSCTAGCGYVATDNILLSLDSTK
TWV*
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mRNA from alignment at scaffold_47:152802..153645+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10287 ID=mRNA_10287|Name=jgi.p|Nanoce1779_2|320674|organism=Nannochloropsis oceanica|type=mRNA|length=844bp|location=Sequence derived from alignment at scaffold_47:152802..153645+ (Nannochloropsis oceanica)
TATTGATACCACACACACACCCCGTACAATGCACGTCAGCCGCCTTGGAC
ACATGCAAATTATAGTATGAGAAGAATATGTTGAGTGCTGGATGCATGGT
GATGCCTGTAGTAGTGCATTGCAGATGGGAAAAGGCAGCCAGGCAAGCCA
CTGAGGTAAAAGCATGCCTTCTTGCTCTGTTGGTGATGATTCATGCCGTG
CTGTAGCCTTTTCTCTTCCCGGCACCCTTGTCACCTACGCCACGGCTTGA
AATGCACACAGCATGCGGCCCCTAAAGCAAGAAAGGCATGAAGATGGATA
AATTCCTTTTTGGGTGGGCGTAGCATTGTATCTTTCGTAAGCTAACTCAC
TCTCCTTTCTACCTCCTCACCTACCCCCCCCACCGCCCGCCTTTGGCAGC
AGGCCAGCTGTGGGCATTCACAAAGTCCATGTCCTCATCGGCCATGTCCC
GCGTTCCATCTGTCCTCGGATCTCGCCCCTCTTCCTCCCGGCGCCACCTC
CTCCGACCAATCCGCCCTTTCAGCACGACCCGTTGTCCCACAAAAACAGC
CTCCCCCCGGAACCTACGCCTGGAGGGATCTCCCCTACCATAACCCCCTC
TCCCCCACCCCCCCCACCCCAAACACCACCTCGACATCTTTATTTCCTCT
TCCGGGCCTTTTCCTCGTCCCACGCAGCCCGTCCTTGTATTCGTGCACGG
CGGGCTGTGGATACGTGGCGACCGACAACATCCTTCTAAGCCTGGACTCT
ACGAAAACGTGGGTGTAGCATGCGCTCGCGCTGGGATTGTAGGTGTGATT
ATCTCTTATCGACTGGCGCCTGATGTGCTAGTTTTTGATCAGAT
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Coding sequence (CDS) from alignment at scaffold_47:152802..153645+

>mRNA_10287 ID=mRNA_10287|Name=jgi.p|Nanoce1779_2|320674|organism=Nannochloropsis oceanica|type=CDS|length=924bp|location=Sequence derived from alignment at scaffold_47:152802..153645+ (Nannochloropsis oceanica)
ATGCCGTGCTGTAGCCTTTTCTCTTCCCGGCACCCTTGTCACCTACGCCA
CGGCTTGAAATGCACACAGCATGCGGCCCCTAAAGCAAGAAAGCAGGCCA
GCTGTGGGCATTCACAAAGTCCATGTCCTCATCGGCCATGTCCCGCGTTC
CATCTGTCCTCGGATCTCGCCCCTCTTCCTCCCGGCGCCACCTCCTCCGA
CCAATCCGCCCTTTCAGCACGACCCGTTGTCCCACAAAAACAGCCTCCCC
CCGGAACCTACGCCTGGAGGGATCTCCCCTACCATAACCCCCTCTCCCCC
ACCCCCCCCACCCCAAACACCACCTCGACATCTTTATTTCCTCTTCCGGG
CCTTTTCCTCGTCCCACGCAGCCCGTCCTTGTATTCGTGCACGGCGGGCT
GTGGATACGTGGCGACCGACAACATCCTTCTAAGCCTGGACTCTACGAAA
ACGTGGGTGTAGATGCCGTGCTGTAGCCTTTTCTCTTCCCGGCACCCTTG
TCACCTACGCCACGGCTTGAAATGCACACAGCATGCGGCCCCTAAAGCAA
GAAAGCAGGCCAGCTGTGGGCATTCACAAAGTCCATGTCCTCATCGGCCA
TGTCCCGCGTTCCATCTGTCCTCGGATCTCGCCCCTCTTCCTCCCGGCGC
CACCTCCTCCGACCAATCCGCCCTTTCAGCACGACCCGTTGTCCCACAAA
AACAGCCTCCCCCCGGAACCTACGCCTGGAGGGATCTCCCCTACCATAAC
CCCCTCTCCCCCACCCCCCCCACCCCAAACACCACCTCGACATCTTTATT
TCCTCTTCCGGGCCTTTTCCTCGTCCCACGCAGCCCGTCCTTGTATTCGT
GCACGGCGGGCTGTGGATACGTGGCGACCGACAACATCCTTCTAAGCCTG
GACTCTACGAAAACGTGGGTGTAG
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Synonyms
Publications