jgi.p|Nanoce1779_2|674592, mRNA_10164 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|674592
Unique Name	mRNA_10164
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3854
Alignment location	scaffold_48:15805..19658 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	674678
Track	FilteredModels2
ProteinId	674592

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_48	supercontig	scaffold_48:15805..19658 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|674592	gene_10164	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|674592	mRNA_10164-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10164	CDS_10164	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_48:15805..19658-
coding sequence from alignment at scaffold_48:15805..19658-

mRNA sequence

>mRNA_10164 ID=mRNA_10164|Name=jgi.p|Nanoce1779_2|674592|organism=Nannochloropsis oceanica|type=mRNA|length=3854bp
CTCATTTTCGTCAACTGGCAGCCATGTGTGGTAACTACCGTTCTCGCCGG
TCGCTAATCCACACCGTCAGTGCTATCCGCGGTTCGCCCTCGTTGTGCGA
CGGCAATACCTCGTGCAGAATGGCAGCACTGTCGAAGAGCACTAAGCGAC
CCCCGTACGGAGCAACGTCGTGTTCTGTCGTCGCCATCGCTGCACTCGCG
TTGTCAATGCCTATGACTGCAAGAGCAGCAGCAGGAGGAAGATCGGCAGC
AACGGTATAAGCATTCGCGTTGGCTGCGCCATCAGCAGACGCTGCATGAA
TCGTGGCAGTGATAGAAGCACCGACTGCAGCTGCAGGAGCATCGCTATCC
GGTGACCTGGCGTGCGTCTCATTCTTATCAAAAGCGCTACCCGCGCCACC
AGTTGCAGTTGTATCACCAGAGAAAAGAACAGAAGGCATGGCAGGCACGG
TAACGTCATTTGTGGCAGTAGTGTCAATGGCATCACCGTCTTGTAACATC
GGCTGCTGCTTCGTCCTCATTCGACCAAGAGCACTACCACCACCATCAGA
TGCAACAGCAACACCACCCGAATCACAACCAGTCTTGGAAGAAGAATTAG
GCAAGTGACATCGCAAGCAGCCGCCCATTGTATCCTTGTCCCAATTCTTA
TCATTTAAGTACAATATCGCCGTTATGGTCCTCTCGCGGTAGGCCCGGGC
ACGAAGCCAGGCACTCAAACCGAGGGTCCAGATGCTATCCGTGGAGGCAT
CCAGATGCGGTGTATAATGGGCTTGGCTGTCCCCTGCATAGCATGCCAGT
TGCGCGGCGGACTGAACCCACAACACACTCTTATCGTAGGCAGGCGTTGC
CGCAAACTCGTGCGCCAGGCCACGCAGCAACGCGACGGCATGCTTCAATC
CAGGTCCGACCCCTTTTTCTTGTCCCGTTATCCACACCACCGAGTCGCGC
CGCACGCTCGAGTCCCTATTGGCGTTCGCCGCAAAGGTACCGCCACCTTG
TTGTAGCAAAATATCCACGTCCTCTCGCGCAGCATGAAGCTCTCGGTCGC
TCAACATCGTATCCAGCACAATCACGTGCCCGTTGCGAATGGCATTTGCC
ACAGAGGGAAAAGCCACGGGAAATTTATACGAGTAGGCGGCTTCGCTGGC
AGGATCTGAGAGCACAGATTCACTCTGTGCCGACGAAATTAATGAACCCA
GGCCCACACACGCCACTCCCACCATGGCCGCGGCCTCGGCCCGCTTAGTG
AAAGCAAAAGGGAGAGAAGAGTGGAAGATAAGGGAAGGCATACGGCTTTT
CAGTGGAAGTACAAACTTACCTGGCTCGTGGCAGCTCGGCGGATCGAGGC
CAAAACCATGTGGACGACGACTGGCGATGCATGTGGATTTGTTTTGCGTG
GTCAGTTTTCAAGCGTATGCTTTCTTGCATGTTGCATTTTGCTGGGCGAT
GACGACGCAACGATTAGCGACTGGATCTCGCCGGCGGGCTTCGACGTCGA
ACGTGTCTCACCGCACGCTTACAATTTCTAAAAGTAAGCACCACACACCC
GTTTAAAATAGGCCAAGGGCTAAAACCTTTCCATCATGAGCTTACCGTCA
CCACCACTTTTTCTTCCTACTCCTTTCGCTCGAGCAGCACCAATACCTCC
ACGTCTCGTCGCCCTGCCCACCCTCCCCCATGCTCTCCTTTATGAGATCT
GCGCTTACATGTGGCCAGGAGATGTGGCTCGCTTGACCTCGGCAGCTCGG
GGGTTGGGTGCCGCACAGGACGAAAATGGGACCAATTTGATATCGAACGG
CATGTCCTTCTTCCGTCCATCGAAGCAATTAACTGTGGTCGTCGTTGAAG
ACATCATCACGCGTCGCTTGCCATTTTGTAAAGCCCTTCGCGTCTTGGAC
TTATCCTCAGCCGAGCTTACTCCCAATATTATCCTTACATTGGGGCGCCT
AGCCGCGGAGGAGGGCAATTTTTTCCAAACGGTACGTTCCCTCAATCTGT
TCGATAACAAGCTGAGAAGCGAGGGATGCCTTGCTCTGGCACAGGCCCTA
GAGCGAGGGGGGTTTCGCTCTGGTTTGCAAGGGCTCTACGTGCGTGCCAA
TCAAATCGGGGGCGACGACTATGGAGGCGGTGGTGGGGAGGGAGAAGATC
ATATTGCCGTTTTATGTGAGGTCCTGAAATGCGGGGCCTGCAGTGCACCA
TTGACCTCTCTCAGCCTCGCGCAAAATGATCTGGGCACCATTGCCGCCTT
GCACATAGGAGGTGCTCTCGGCTCTATTTCCTTAAAGAGGCTGCTGAAGC
TTGACTTGCACCTGAATCAATTGGGCGACTGCGGGGCCACGTCGGTGGCG
GAGGGACTGGCTGCGGGAGGTGGCATGCCGTGTCTGGACGAATTTTATCT
TGGATTTAATGGCATTGGCGACACAGGGGCGAGGGCCGTGGCTGATTGCC
TGGCTCACATGCCCATGCTGCGGGAGCTAGATTTGGCTTGCAATGCCATC
GGAAACGAAGGAGCGCTTGCCCTTGCGGAGCGCTTGTCAGTCGAGGGAGG
AAAGATGAGGACGGCCCGAGCTGCTGCAGTAAGTACGATGAGCACAACTG
CTATGCTGCAGCTGGAGACATTGGATCTGCGAGGGAATAGGATAGGAGAT
GATGGGGCCTGTGCTTTTAGGGACTTTCTGGCGACGGAAACCACGGACGG
AGGGTTGGGGGGGGAGGAAGGCAACGGGGGCCAGATGGGAGAAGTTGAAG
GGGGCTGTCCAAATTTGGCCAATATATTTCTGGATGACAACCGTGCCATT
CGCGCGCGGGGACGTGAAGCATTGCAAGCGCTGCAGATCATTAGGGGGAT
CGTGTGCATAGAAGGACCGAATTGTTGAGAGGAAGTGCGTGTATGTCTAA
CATAGAAGTAAAGGTGGAGAAATTGGTGCTTTGGTTGCTAGCTCGTGTGT
GCTGGTCAAGAGCCTCCTGAATGTATTCCCTTTTATCGATGGGTAGGCAG
TACAAGTAGGGCGTCCAAAAAAATAAATCGTCTCAATGTCTTCACAACCT
CCCCACGAAAAGTAGAAGAAATGCTCTTCGCTTGTCGTGACTGCAGCAAG
TTTTTTATGCGAGCATCTTTATGCTCACTTGAAACTTGATTGCATGCCTC
CTTTATGCTCCGGCTCGGCGTGGTGACTATTCCAGTGTCATCCGGCCCAT
ACATTTTTCTTCCAGCAGAGTTATCTTCGTGAGGTGCGCCCTTTCCTAGA
AAGTAGTGGTTTCAGTGATCGCAACGACGGCTTTCCTCTTTCAGAGGTAT
GAAAAAAAGAAAAATTGAATCTGAAGCCAAAGGGGTTTCTAGGCCGAAGT
GACAGGAACGCACGTCCATCGCGGTCTGCAACACTAAGTGAACCCTTGAC
CAATAGGATGTCCCTTCGCTGTTCAGGATCCCTGCGGGAATTGAACATGA
ACTGGAATCTACCACTCTCTAACGCTCCTTTCAAGAACCGACGAGATGGT
CGGAACTCGAAGGAGAACCGATAATCGCTGAGCTATGGCTCCAGAAAACA
CGCTTTCTCCGATTGTTATTTACTATCAATATATATTCGAACTTCCGCTC
CAGAGGATTAAAAGGTCACAGCCAGGTGGAGAAGGTATTAATCAGAGCAA
ATAGCTTGGACGCACCAATCGAGATAATTAAATTGAATTTTCATGAATCT
ATTAAACCCTTGGAAATTGAGAAAGAGGGTAATTGCGATGCAAAAGCATG
ACCGTCGATCTCTAGCTGGTCGTAATGTTCTATGATGCCCCGATCTTCAC
TGTAGACAAGGCGCTCGGATAAAAAAAGATGAAGTCTCATTGGTACGTCA
CGGG

protein sequence of jgi.p|Nanoce1779_2|674592

>mRNA_10164-protein ID=mRNA_10164-protein|Name=jgi.p|Nanoce1779_2|674592|organism=Nannochloropsis oceanica|type=polypeptide|length=431bp
MSLPSPPLFLPTPFARAAPIPPRLVALPTLPHALLYEICAYMWPGDVARL
TSAARGLGAAQDENGTNLISNGMSFFRPSKQLTVVVVEDIITRRLPFCKA
LRVLDLSSAELTPNIILTLGRLAAEEGNFFQTVRSLNLFDNKLRSEGCLA
LAQALERGGFRSGLQGLYVRANQIGGDDYGGGGGEGEDHIAVLCEVLKCG
ACSAPLTSLSLAQNDLGTIAALHIGGALGSISLKRLLKLDLHLNQLGDCG
ATSVAEGLAAGGGMPCLDEFYLGFNGIGDTGARAVADCLAHMPMLRELDL
ACNAIGNEGALALAERLSVEGGKMRTARAAAVSTMSTTAMLQLETLDLRG
NRIGDDGACAFRDFLATETTDGGLGGEEGNGGQMGEVEGGCPNLANIFLD
DNRAIRARGREALQALQIIRGIVCIEGPNC*

mRNA from alignment at scaffold_48:15805..19658-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10164 ID=mRNA_10164|Name=jgi.p|Nanoce1779_2|674592|organism=Nannochloropsis oceanica|type=mRNA|length=3854bp|location=Sequence derived from alignment at scaffold_48:15805..19658- (Nannochloropsis oceanica)
CTCATTTTCGTCAACTGGCAGCCATGTGTGGTAACTACCGTTCTCGCCGG
TCGCTAATCCACACCGTCAGTGCTATCCGCGGTTCGCCCTCGTTGTGCGA
CGGCAATACCTCGTGCAGAATGGCAGCACTGTCGAAGAGCACTAAGCGAC
CCCCGTACGGAGCAACGTCGTGTTCTGTCGTCGCCATCGCTGCACTCGCG
TTGTCAATGCCTATGACTGCAAGAGCAGCAGCAGGAGGAAGATCGGCAGC
AACGGTATAAGCATTCGCGTTGGCTGCGCCATCAGCAGACGCTGCATGAA
TCGTGGCAGTGATAGAAGCACCGACTGCAGCTGCAGGAGCATCGCTATCC
GGTGACCTGGCGTGCGTCTCATTCTTATCAAAAGCGCTACCCGCGCCACC
AGTTGCAGTTGTATCACCAGAGAAAAGAACAGAAGGCATGGCAGGCACGG
TAACGTCATTTGTGGCAGTAGTGTCAATGGCATCACCGTCTTGTAACATC
GGCTGCTGCTTCGTCCTCATTCGACCAAGAGCACTACCACCACCATCAGA
TGCAACAGCAACACCACCCGAATCACAACCAGTCTTGGAAGAAGAATTAG
GCAAGTGACATCGCAAGCAGCCGCCCATTGTATCCTTGTCCCAATTCTTA
TCATTTAAGTACAATATCGCCGTTATGGTCCTCTCGCGGTAGGCCCGGGC
ACGAAGCCAGGCACTCAAACCGAGGGTCCAGATGCTATCCGTGGAGGCAT
CCAGATGCGGTGTATAATGGGCTTGGCTGTCCCCTGCATAGCATGCCAGT
TGCGCGGCGGACTGAACCCACAACACACTCTTATCGTAGGCAGGCGTTGC
CGCAAACTCGTGCGCCAGGCCACGCAGCAACGCGACGGCATGCTTCAATC
CAGGTCCGACCCCTTTTTCTTGTCCCGTTATCCACACCACCGAGTCGCGC
CGCACGCTCGAGTCCCTATTGGCGTTCGCCGCAAAGGTACCGCCACCTTG
TTGTAGCAAAATATCCACGTCCTCTCGCGCAGCATGAAGCTCTCGGTCGC
TCAACATCGTATCCAGCACAATCACGTGCCCGTTGCGAATGGCATTTGCC
ACAGAGGGAAAAGCCACGGGAAATTTATACGAGTAGGCGGCTTCGCTGGC
AGGATCTGAGAGCACAGATTCACTCTGTGCCGACGAAATTAATGAACCCA
GGCCCACACACGCCACTCCCACCATGGCCGCGGCCTCGGCCCGCTTAGTG
AAAGCAAAAGGGAGAGAAGAGTGGAAGATAAGGGAAGGCATACGGCTTTT
CAGTGGAAGTACAAACTTACCTGGCTCGTGGCAGCTCGGCGGATCGAGGC
CAAAACCATGTGGACGACGACTGGCGATGCATGTGGATTTGTTTTGCGTG
GTCAGTTTTCAAGCGTATGCTTTCTTGCATGTTGCATTTTGCTGGGCGAT
GACGACGCAACGATTAGCGACTGGATCTCGCCGGCGGGCTTCGACGTCGA
ACGTGTCTCACCGCACGCTTACAATTTCTAAAAGTAAGCACCACACACCC
GTTTAAAATAGGCCAAGGGCTAAAACCTTTCCATCATGAGCTTACCGTCA
CCACCACTTTTTCTTCCTACTCCTTTCGCTCGAGCAGCACCAATACCTCC
ACGTCTCGTCGCCCTGCCCACCCTCCCCCATGCTCTCCTTTATGAGATCT
GCGCTTACATGTGGCCAGGAGATGTGGCTCGCTTGACCTCGGCAGCTCGG
GGGTTGGGTGCCGCACAGGACGAAAATGGGACCAATTTGATATCGAACGG
CATGTCCTTCTTCCGTCCATCGAAGCAATTAACTGTGGTCGTCGTTGAAG
ACATCATCACGCGTCGCTTGCCATTTTGTAAAGCCCTTCGCGTCTTGGAC
TTATCCTCAGCCGAGCTTACTCCCAATATTATCCTTACATTGGGGCGCCT
AGCCGCGGAGGAGGGCAATTTTTTCCAAACGGTACGTTCCCTCAATCTGT
TCGATAACAAGCTGAGAAGCGAGGGATGCCTTGCTCTGGCACAGGCCCTA
GAGCGAGGGGGGTTTCGCTCTGGTTTGCAAGGGCTCTACGTGCGTGCCAA
TCAAATCGGGGGCGACGACTATGGAGGCGGTGGTGGGGAGGGAGAAGATC
ATATTGCCGTTTTATGTGAGGTCCTGAAATGCGGGGCCTGCAGTGCACCA
TTGACCTCTCTCAGCCTCGCGCAAAATGATCTGGGCACCATTGCCGCCTT
GCACATAGGAGGTGCTCTCGGCTCTATTTCCTTAAAGAGGCTGCTGAAGC
TTGACTTGCACCTGAATCAATTGGGCGACTGCGGGGCCACGTCGGTGGCG
GAGGGACTGGCTGCGGGAGGTGGCATGCCGTGTCTGGACGAATTTTATCT
TGGATTTAATGGCATTGGCGACACAGGGGCGAGGGCCGTGGCTGATTGCC
TGGCTCACATGCCCATGCTGCGGGAGCTAGATTTGGCTTGCAATGCCATC
GGAAACGAAGGAGCGCTTGCCCTTGCGGAGCGCTTGTCAGTCGAGGGAGG
AAAGATGAGGACGGCCCGAGCTGCTGCAGTAAGTACGATGAGCACAACTG
CTATGCTGCAGCTGGAGACATTGGATCTGCGAGGGAATAGGATAGGAGAT
GATGGGGCCTGTGCTTTTAGGGACTTTCTGGCGACGGAAACCACGGACGG
AGGGTTGGGGGGGGAGGAAGGCAACGGGGGCCAGATGGGAGAAGTTGAAG
GGGGCTGTCCAAATTTGGCCAATATATTTCTGGATGACAACCGTGCCATT
CGCGCGCGGGGACGTGAAGCATTGCAAGCGCTGCAGATCATTAGGGGGAT
CGTGTGCATAGAAGGACCGAATTGTTGAGAGGAAGTGCGTGTATGTCTAA
CATAGAAGTAAAGGTGGAGAAATTGGTGCTTTGGTTGCTAGCTCGTGTGT
GCTGGTCAAGAGCCTCCTGAATGTATTCCCTTTTATCGATGGGTAGGCAG
TACAAGTAGGGCGTCCAAAAAAATAAATCGTCTCAATGTCTTCACAACCT
CCCCACGAAAAGTAGAAGAAATGCTCTTCGCTTGTCGTGACTGCAGCAAG
TTTTTTATGCGAGCATCTTTATGCTCACTTGAAACTTGATTGCATGCCTC
CTTTATGCTCCGGCTCGGCGTGGTGACTATTCCAGTGTCATCCGGCCCAT
ACATTTTTCTTCCAGCAGAGTTATCTTCGTGAGGTGCGCCCTTTCCTAGA
AAGTAGTGGTTTCAGTGATCGCAACGACGGCTTTCCTCTTTCAGAGGTAT
GAAAAAAAGAAAAATTGAATCTGAAGCCAAAGGGGTTTCTAGGCCGAAGT
GACAGGAACGCACGTCCATCGCGGTCTGCAACACTAAGTGAACCCTTGAC
CAATAGGATGTCCCTTCGCTGTTCAGGATCCCTGCGGGAATTGAACATGA
ACTGGAATCTACCACTCTCTAACGCTCCTTTCAAGAACCGACGAGATGGT
CGGAACTCGAAGGAGAACCGATAATCGCTGAGCTATGGCTCCAGAAAACA
CGCTTTCTCCGATTGTTATTTACTATCAATATATATTCGAACTTCCGCTC
CAGAGGATTAAAAGGTCACAGCCAGGTGGAGAAGGTATTAATCAGAGCAA
ATAGCTTGGACGCACCAATCGAGATAATTAAATTGAATTTTCATGAATCT
ATTAAACCCTTGGAAATTGAGAAAGAGGGTAATTGCGATGCAAAAGCATG
ACCGTCGATCTCTAGCTGGTCGTAATGTTCTATGATGCCCCGATCTTCAC
TGTAGACAAGGCGCTCGGATAAAAAAAGATGAAGTCTCATTGGTACGTCA
CGGG

Coding sequence (CDS) from alignment at scaffold_48:15805..19658-

>mRNA_10164 ID=mRNA_10164|Name=jgi.p|Nanoce1779_2|674592|organism=Nannochloropsis oceanica|type=CDS|length=1293bp|location=Sequence derived from alignment at scaffold_48:15805..19658- (Nannochloropsis oceanica)
ATGAGCTTACCGTCACCACCACTTTTTCTTCCTACTCCTTTCGCTCGAGC
AGCACCAATACCTCCACGTCTCGTCGCCCTGCCCACCCTCCCCCATGCTC
TCCTTTATGAGATCTGCGCTTACATGTGGCCAGGAGATGTGGCTCGCTTG
ACCTCGGCAGCTCGGGGGTTGGGTGCCGCACAGGACGAAAATGGGACCAA
TTTGATATCGAACGGCATGTCCTTCTTCCGTCCATCGAAGCAATTAACTG
TGGTCGTCGTTGAAGACATCATCACGCGTCGCTTGCCATTTTGTAAAGCC
CTTCGCGTCTTGGACTTATCCTCAGCCGAGCTTACTCCCAATATTATCCT
TACATTGGGGCGCCTAGCCGCGGAGGAGGGCAATTTTTTCCAAACGGTAC
GTTCCCTCAATCTGTTCGATAACAAGCTGAGAAGCGAGGGATGCCTTGCT
CTGGCACAGGCCCTAGAGCGAGGGGGGTTTCGCTCTGGTTTGCAAGGGCT
CTACGTGCGTGCCAATCAAATCGGGGGCGACGACTATGGAGGCGGTGGTG
GGGAGGGAGAAGATCATATTGCCGTTTTATGTGAGGTCCTGAAATGCGGG
GCCTGCAGTGCACCATTGACCTCTCTCAGCCTCGCGCAAAATGATCTGGG
CACCATTGCCGCCTTGCACATAGGAGGTGCTCTCGGCTCTATTTCCTTAA
AGAGGCTGCTGAAGCTTGACTTGCACCTGAATCAATTGGGCGACTGCGGG
GCCACGTCGGTGGCGGAGGGACTGGCTGCGGGAGGTGGCATGCCGTGTCT
GGACGAATTTTATCTTGGATTTAATGGCATTGGCGACACAGGGGCGAGGG
CCGTGGCTGATTGCCTGGCTCACATGCCCATGCTGCGGGAGCTAGATTTG
GCTTGCAATGCCATCGGAAACGAAGGAGCGCTTGCCCTTGCGGAGCGCTT
GTCAGTCGAGGGAGGAAAGATGAGGACGGCCCGAGCTGCTGCAGTAAGTA
CGATGAGCACAACTGCTATGCTGCAGCTGGAGACATTGGATCTGCGAGGG
AATAGGATAGGAGATGATGGGGCCTGTGCTTTTAGGGACTTTCTGGCGAC
GGAAACCACGGACGGAGGGTTGGGGGGGGAGGAAGGCAACGGGGGCCAGA
TGGGAGAAGTTGAAGGGGGCTGTCCAAATTTGGCCAATATATTTCTGGAT
GACAACCGTGCCATTCGCGCGCGGGGACGTGAAGCATTGCAAGCGCTGCA
GATCATTAGGGGGATCGTGTGCATAGAAGGACCGAATTGTTGA

Synonyms

Publications