jgi.p|Nanoce1779_2|580001, mRNA_2333 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580001
Unique NamemRNA_2333
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length822
Alignment locationscaffold_5:75871..76804 +

Link to JBrowse

Properties
Property NameValue
TranscriptId580087
TrackFilteredModels2
ProteinId580001
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:75871..76804 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580001gene_2333Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580001mRNA_2333-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2333CDS_2333Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2333 ID=mRNA_2333|Name=jgi.p|Nanoce1779_2|580001|organism=Nannochloropsis oceanica|type=mRNA|length=822bp
AACAGGACACATATTTTCATGTCGCGGCTCTTCTATCTTCCGCTTCTTCT
CCTCCTCCTCCCCGTCCTCACCCCCGCCTTCCTCTTCCCTGCCACCCGAC
TCGCCCTCCCTGCAAGGCAGCAGCGCTCCCTCCTCCATTCCACTGTGGAT
GCAGCCGACTACCCCTCCGACACTGCCGATCCAGACAACTCCGTTGACGC
TTCTACTTCTCGAAACGGAACTGACCCTCCTCCCGTTGCCGACGAGGCCA
AGCAGCAATTACGCGAGAATTTTAAGTGTCAGATTTACAAGGCGGCTTCG
AGGCTGAACCGAGGGCAGCTGCAAAACCTCGATCAGAAGAACGAGATGAT
CAACCTGGTGGCCCAACTGGAAGCTCTCGGCGCCGGGCGGTCCGTGGATG
CCGAGGACGTAGAGGGAGTTTGGGAACTCGTATACACTGATGTGGAGCCA
TTCAGGGTATCCCCATTCTTCCAGACGGTGGGGAAAGTGATGGGCGGCAC
CACCTTAAGCGCCGAGGACTTCTTCCGCTTGCATCGGCTGGCCACAAGGG
GAAGTGAAATTGGCAAAGTATGGAATACAAAAGAAGGGGGAAAAGTAGAA
TCTTAGGGGAAGAGCCGCGAATATATGCGGTCTCATGAGCGCCATCTTCA
GGCGTATATATATGTATACACTTGAAAACCGATGGTGCCTGCATTCCCTT
CTTATCGACGACTTATAATAGAAGTCTGTCGCCATTCTCACCACTCCTCC
TTCCTGGCTATCCCTCCCTTTGTCGCCCTCGCTAGGTGCGTCAAATCATC
ACATCCCAAGAACTTGTCTCGG
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protein sequence of jgi.p|Nanoce1779_2|580001

>mRNA_2333-protein ID=mRNA_2333-protein|Name=jgi.p|Nanoce1779_2|580001|organism=Nannochloropsis oceanica|type=polypeptide|length=196bp
MSRLFYLPLLLLLLPVLTPAFLFPATRLALPARQQRSLLHSTVDAADYPS
DTADPDNSVDASTSRNGTDPPPVADEAKQQLRENFKCQIYKAASRLNRGQ
LQNLDQKNEMINLVAQLEALGAGRSVDAEDVEGVWELVYTDVEPFRVSPF
FQTVGKVMGGTTLSAEDFFRLHRLATRGSEIGKVWNTKEGGKVES*
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mRNA from alignment at scaffold_5:75871..76804+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2333 ID=mRNA_2333|Name=jgi.p|Nanoce1779_2|580001|organism=Nannochloropsis oceanica|type=mRNA|length=934bp|location=Sequence derived from alignment at scaffold_5:75871..76804+ (Nannochloropsis oceanica)
AACAGGACACATATTTTCATGTCGCGGCTCTTCTATCTTCCGCTTCTTCT
CCTCCTCCTCCCCGTCCTCACCCCCGCCTTCCTCTTCCCTGCCACCCGAC
TCGCCCTCCCTGCAAGGCAGCAGCGCTCCCTCCTCCATTCCACTGTGGAT
GCAGCCGACTACCCCTCCGACACTGCCGATCCAGACAACTCCGTTGACGC
TTCTACTTCTCGAAACGGAACTGACCCTCCTCCCGTTGCCGACGAGGCCA
AGCAGCAATTACGCGAGAATTTTAAGTGTCAGATTTACAAGGCGGCTTCG
AGGCTGAACCGAGGGCAGCTGCAAAACCTCGATCAGAAGGTAATGAACAG
GGGATAGGTTATGAATTAGACTGATTTGCTGGAGAAGAATCCAGCAAAGC
AGTATCCTCACTCACAACACTTCCCCCCTGTCTCTCCGTCAAATCCTTCA
GAACGAGATGATCAACCTGGTGGCCCAACTGGAAGCTCTCGGCGCCGGGC
GGTCCGTGGATGCCGAGGACGTAGAGGGAGTTTGGGAACTCGTATACACT
GATGTGGAGCCATTCAGGGTATCCCCATTCTTCCAGACGGTGGGGAAAGT
GATGGGCGGCACCACCTTAAGCGCCGAGGACTTCTTCCGCTTGCATCGGC
TGGCCACAAGGGGAAGTGAAATTGGCAAAGTATGGAATACAAAAGAAGGG
GGAAAAGTAGAATCTTAGGGGAAGAGCCGCGAATATATGCGGTCTCATGA
GCGCCATCTTCAGGCGTATATATATGTATACACTTGAAAACCGATGGTGC
CTGCATTCCCTTCTTATCGACGACTTATAATAGAAGTCTGTCGCCATTCT
CACCACTCCTCCTTCCTGGCTATCCCTCCCTTTGTCGCCCTCGCTAGGTG
CGTCAAATCATCACATCCCAAGAACTTGTCTCGG
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Coding sequence (CDS) from alignment at scaffold_5:75871..76804+

>mRNA_2333 ID=mRNA_2333|Name=jgi.p|Nanoce1779_2|580001|organism=Nannochloropsis oceanica|type=CDS|length=1176bp|location=Sequence derived from alignment at scaffold_5:75871..76804+ (Nannochloropsis oceanica)
ATGTCGCGGCTCTTCTATCTTCCGCTTCTTCTCCTCCTCCTCCCCGTCCT
CACCCCCGCCTTCCTCTTCCCTGCCACCCGACTCGCCCTCCCTGCAAGGC
AGCAGCGCTCCCTCCTCCATTCCACTGTGGATGCAGCCGACTACCCCTCC
GACACTGCCGATCCAGACAACTCCGTTGACGCTTCTACTTCTCGAAACGG
AACTGACCCTCCTCCCGTTGCCGACGAGGCCAAGCAGCAATTACGCGAGA
ATTTTAAGTGTCAGATTTACAAGGCGGCTTCGAGGCTGAACCGAGGGCAG
CTGCAAAACCTCGATCAGAAGAACGAGATGATCAACCTGGTGGCCCAACT
GGAAGCTCTCGGCGCCGGGCGGTCCGTGGATGCCGAGGACGTAGAGGGAG
TTTGGGAACTCGTATACACTGATGTGGAGCCATTCAGGGTATCCCCATTC
TTCCAGACGGTGGGGAAAGTGATGGGCGGCACCACCTTAAGCGCCGAGGA
CTTCTTCCGCTTGCATCGGCTGGCCACAAGGGGAAGTGAAATTGGCAAAG
TATGGAATACAAAAGAAGGGGGAAAAGTAGAATCTTAGATGTCGCGGCTC
TTCTATCTTCCGCTTCTTCTCCTCCTCCTCCCCGTCCTCACCCCCGCCTT
CCTCTTCCCTGCCACCCGACTCGCCCTCCCTGCAAGGCAGCAGCGCTCCC
TCCTCCATTCCACTGTGGATGCAGCCGACTACCCCTCCGACACTGCCGAT
CCAGACAACTCCGTTGACGCTTCTACTTCTCGAAACGGAACTGACCCTCC
TCCCGTTGCCGACGAGGCCAAGCAGCAATTACGCGAGAATTTTAAGTGTC
AGATTTACAAGGCGGCTTCGAGGCTGAACCGAGGGCAGCTGCAAAACCTC
GATCAGAAGAACGAGATGATCAACCTGGTGGCCCAACTGGAAGCTCTCGG
CGCCGGGCGGTCCGTGGATGCCGAGGACGTAGAGGGAGTTTGGGAACTCG
TATACACTGATGTGGAGCCATTCAGGGTATCCCCATTCTTCCAGACGGTG
GGGAAAGTGATGGGCGGCACCACCTTAAGCGCCGAGGACTTCTTCCGCTT
GCATCGGCTGGCCACAAGGGGAAGTGAAATTGGCAAAGTATGGAATACAA
AAGAAGGGGGAAAAGTAGAATCTTAG
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Synonyms
Publications