jgi.p|Nanoce1779_2|339302, mRNA_2780 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|339302
Unique NamemRNA_2780
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length810
Alignment locationscaffold_5:1170473..1173205 -

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Properties
Property NameValue
TranscriptId339388
TrackFilteredModels2
ProteinId339302
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:1170473..1173205 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|339302gene_2780Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|339302mRNA_2780-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2780CDS_2780Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2780 ID=mRNA_2780|Name=jgi.p|Nanoce1779_2|339302|organism=Nannochloropsis oceanica|type=mRNA|length=810bp
GGCTTGGAAACCGACCTCAAACACTGCCTCATTCCCCTTCCCTCCCTCCC
ACCACTACACCACAACAACATGCACCGCTTGCATGCTTGCCTTGCTGCTT
GCTGCCATCATCAACCACGACCACCAGGGGGACAACATGCTTCGGCGCTT
CACGGCGAAGGCTGGGGCCATGGCACGGAGAGGGAGCACGCTTCCCGGGC
CAGGAAAGGGACGCGTGCTGCGGGGGGGCTTCTCCTCGACAGTCCACACG
GGGCCAGGCACGAGCAGTGGAGAGGAGCTCGGTAAGAAGTGGGCGACAAT
CTTCCAAGGCATTGGCGCGGTGCTAGGGGTTGCTGGTGCTACCGCTGTGG
TCGTGCGTACTTTCGACCAGACTGAGATGGCGACGGAGATAAATATGTCC
AGAGCAAGGCGGCGGCGGAGATCGCGCAGGCGAAAGCGGAGATCGTGCGT
GTGGAGGACAAGGCGGCGGCGGAGATCGCGCGTTTGGAAGACAAGCGGAC
AATGTCGGAAGTGTTTTGGAAGGCGGAGGTGGAGCGGTTCAAGCGCGAGA
TCCAACTGGCTTACACTCAAGACTATGAGCCTTACCAGGCCGCGCTTGTG
GACAAACGTAAAAAGAGGGGAGGAACCGGCGGATCGGAGGAGAAGGAAGA
GGAGAATTAGGATTCGGGGCCCTACCTTAATATAAATAGAAATCATGTAG
AAAGACACATTCAAAGACATGTACAGTGGACGGGGTTGTGCAGTAGAGAG
ATGGGCAGGAGGGGGATAGGACTCATACACGAGAAACGTAATAACGAGGG
CTCCCCACAA
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protein sequence of jgi.p|Nanoce1779_2|339302

>mRNA_2780-protein ID=mRNA_2780-protein|Name=jgi.p|Nanoce1779_2|339302|organism=Nannochloropsis oceanica|type=polypeptide|length=201bp
MLALLLAAIINHDHQGDNMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGF
SSTVHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQTEMA
TEINMSRARRRRRSRRRKRRSCVWRTRRRRRSRVWKTSGQCRKCFGRRRW
SGSSARSNWLTLKTMSLTRPRLWTNVKRGEEPADRRRRKRRIRIRGPTLI
*
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mRNA from alignment at scaffold_5:1170473..1173205-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2780 ID=mRNA_2780|Name=jgi.p|Nanoce1779_2|339302|organism=Nannochloropsis oceanica|type=mRNA|length=2733bp|location=Sequence derived from alignment at scaffold_5:1170473..1173205- (Nannochloropsis oceanica)
GGCTTGGAAACCGACCTCAAACACTGCCTCATTCCCCTTCCCTCCCTCCC
ACCACTACACCACAACAACATGCACCGCTTGCATGCTTGCCTTGCTGCTT
GCTGCCATCATCAACCACGACCACCAGGGGGACAACATGCTTCGGCGCTT
CACGGCGAAGGCTGGGGCCATGGCACGGAGAGGGAGCACGCTTCCCGGGC
CAGGTGAGGTGGCGTGTGTGATGCATTTAGGAAGAACTCGGGCTTGTTGA
TGGGGTGGGAGTGCGCGTTCAGTGCACGCGACCGCAGTCTGGCCGAGGCA
TGTTGATTCCCCCTTTGTCTGCGTGTCTGTGTCGTTTGCGTTGCAATCTT
TGTTATGCGGACAAGGGCCCGCATCAAGGTGTTCACGCACACGCACATCC
ATACACACCCAACAGGAAAGGGACGCGTGCTGCGGGGGGGCTTCTCCTCG
ACAGTCCACACGGGGCCAGGCACGAGCAGTGGAGAGGAGCTCGGTAAGAA
GTGGGCGACAATCTTCCAAGGCATTGGCGCGGTGCTAGGGGTTGCTGGTG
CTACCGCTGTGGTCGTGCGTACTTTCGACCAGACTGAGATGGCGACGGAG
ATAAAGTATGTCCAGAGCAAGGCGGCGGCGGAGATCGCGCAGGCGAAAGC
GGAGATCGCGCGTGTGGAAGACAAGCGGACAATGTCGGAAGTGTTTTGGA
AGGCGGAGGTGGAGCGGTTCAAGCGCGAGATCCAACTGGCTTACACTCAA
GACTATGAGCCTTACCAGGCCGCGCTTGTGGACAAACGTAAAAAGAGGGG
AGGAACCGGCGGATTGGAGGAGAAGGAAGAGGAGAATTAGGATTCGGGGC
CCTACCTTAATATAAATAGAAACCATGTAGAAAGACACATTCAAAGACAT
GTACAGTGGACGGGGTTGTGCAGTAGAGAGATGGGCAGGAGGGGGATAGG
ACTCATACACGAGAAACGTAATAACGAGGGCTCCCCACAACTTGTATCGA
GCGAGTTTTTCCTTTGTCTTTTATGATTTGATGCACTGGCTCATATCCAT
CTCCCCCACACTAACGCCGCCGACCCTGCTTTCGACTTGTCCAACCAAGC
TCCTGCCGCTTGACGGCAGCAGACCGAGGCGACCCGTCGAAGGAAGGGGC
AGACGCAGTGGGAAGGAGGGAGGAAGTCATGGTATGAGTCAATGGATTGT
AGCGGAAGCTTTGGACCCCGGAAGAAAGGCACGGAGGGGCGTGCTAGAGG
CGGTGTGGTGTTGTTAATAGTGCCAGCACCAAGGCCTGTTTGCGTAATAT
ACACACATACTACTTAGAAAGGCGGCACGTAAGGAGGCTCAACAAGCTTT
GTGGACCCCCGCCCAGCAGCCAGCAGCCAGTCTAGCATGTCTCTCCCTAG
GCCCAGTCTTGTGCGCAGCACCACACTCAATACCAGCCACCACCACCCCA
TCCGTAGAGGTTTGTCACGTCGCACCCTCTATATGGTCCTGGCGTCTGTG
GCTGGCGTCTGTGTGGTGGGTGTGCTCTGTGTGTGCCTTCCATGCATCAT
CATCATCAAGCAAGCCTCTTCTTGTCCCCCATCCCCTTTTGGTCTTGCCC
TTTGGCAAGCCAGGGGCACCCGCACCGCCACCAACCTGTGGTCTAGGATG
CGGAGGGGGAGGGTTTGACGCTGACGGCGTAACGAGTTTGGTTCTGAAGA
GCTTGTTAGTTGTATTTAGGGCGGCTTGGAAACCGACCTCAAACACTGCC
TCATTCCCCTTCCCTCCCTCCCACCACTACACCACAACAACATGCACCGC
TTGCATGCTTGCCTTGCTGCTTGCTGCCATCATCAACCACGACCACCAGG
GGGACAACATGCTTCGGCGCTTCACGGCGAAGGCTGGGGCCATGGCACGG
AGAGGGAGCACGCTTCCCGGGCCAGGTGAGGTGGCGTGTGTGATGCATTT
AGGAAGAACTCGGGCTTGTTGATGGGGTGGGAGTGCGCGTTCAGTGCACG
CGACCGCAGTCTGGCCGAGGCATGTTGATTCCCCCTTTGTCTGCGTGTCT
GTGTCGTTTGCGTTGCAATCTTTGTTATGCGGACAAGGGCCCGCGTCAAG
GTGTTCACGCACACGCACATCCATACACACCCAACAGGAAAGGGACGCGT
GCTGCGGGGGGGCTTCTCCTCGACAGCCCACACGGGGCCGGGCACGAGCA
GTGGAGAGGAGCTCGGTAAGAAGTGGGCGACAATCTTCCAGGGCATTGGC
GCGGTGCTAGGGGTTGCTGGTGCTACCGCTGTGGTCGTGCGTACTTTCGA
CCAGACGGAGATAAAGTATGTCCAGAGCAAGGCGGCGGCGGAGATCGCGC
AGGCGAAAGCGGAGATCGTGCGTGTGGAGGACAAGGCGGCGGCGGAGATC
GCGCGTTTGGAAGACAAGCGGACAATGTCGGAAGTGTTTTGGAAGGCGGA
GGTGGAGCGGTTCAAGCGCGAGATCCAACTGGCTTACACTCAAGACTATG
AGCCTTACCAGGCCGCGCTTGTGGACAAACGTAAAAAGAGGGGAGGAACC
GGCGGATCGGAGGAGAAGGAAGAGGAGAATTAGGATTCGGGGCCCTACCT
TAATATAAATAGAAATCATGTAGAAAGACACATTCAAAGACATGTACAGT
GGACGGGGTTGTGCAGTAGAGAGATGGGCAGGAGGGGGATAGGACTCATA
CACGAGAAACGTAATAACGAGGGCTCCCCACAA
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Coding sequence (CDS) from alignment at scaffold_5:1170473..1173205-

>mRNA_2780 ID=mRNA_2780|Name=jgi.p|Nanoce1779_2|339302|organism=Nannochloropsis oceanica|type=CDS|length=1809bp|location=Sequence derived from alignment at scaffold_5:1170473..1173205- (Nannochloropsis oceanica)
TATGTCCAGAGCAAGGCGGCGGCGGAGATCGCGCAGGCGAAAGCGGAGAT
CGTGCGTGTGGAGGACAAGGCGGCGGCGGAGATCGCGCGTTTGGAAGACA
AGCGGACAATGTCGGAAGTGTTTTGGAAGGCGGAGGTGGAGCGGTTCAAG
CGCGAGATCCAACTGGCTTACACTCAAGACTATGAGCCTTACCAGGCCGC
GCTTGTGGACAAACGTAAAAAGAGGGGAGGAACCGGCGGATCGGAGGAGA
AGGAAGAGGAGAATTAGGATTCGGGGCCCTACCTTAATATAAGAAAGGGA
CGCGTGCTGCGGGGGGGCTTCTCCTCGACAGTCCACACGGGGCCAGGCAC
GAGCAGTGGAGAGGAGCTCGGTAAGAAGTGGGCGACAATCTTCCAAGGCA
TTGGCGCGGTGCTAGGGGTTGCTGGTGCTACCGCTGTGGTCGTGCGTACT
TTCGACCAGACTGAGATGGCGACGGAGATAAAATGCTTGCCTTGCTGCTT
GCTGCCATCATCAACCACGACCACCAGGGGGACAACATGCTTCGGCGCTT
CACGGCGAAGGCTGGGGCCATGGCACGGAGAGGGAGCACGCTTCCCGGGC
CAGTATGTCCAGAGCAAGGCGGCGGCGGAGATCGCGCAGGCGAAAGCGGA
GATCGTGCGTGTGGAGGACAAGGCGGCGGCGGAGATCGCGCGTTTGGAAG
ACAAGCGGACAATGTCGGAAGTGTTTTGGAAGGCGGAGGTGGAGCGGTTC
AAGCGCGAGATCCAACTGGCTTACACTCAAGACTATGAGCCTTACCAGGC
CGCGCTTGTGGACAAACGTAAAAAGAGGGGAGGAACCGGCGGATCGGAGG
AGAAGGAAGAGGAGAATTAGGATTCGGGGCCCTACCTTAATATAAGAAAG
GGACGCGTGCTGCGGGGGGGCTTCTCCTCGACAGTCCACACGGGGCCAGG
CACGAGCAGTGGAGAGGAGCTCGGTAAGAAGTGGGCGACAATCTTCCAAG
GCATTGGCGCGGTGCTAGGGGTTGCTGGTGCTACCGCTGTGGTCGTGCGT
ACTTTCGACCAGACTGAGATGGCGACGGAGATAAAATGCTTGCCTTGCTG
CTTGCTGCCATCATCAACCACGACCACCAGGGGGACAACATGCTTCGGCG
CTTCACGGCGAAGGCTGGGGCCATGGCACGGAGAGGGAGCACGCTTCCCG
GGCCAGTATGTCCAGAGCAAGGCGGCGGCGGAGATCGCGCAGGCGAAAGC
GGAGATCGTGCGTGTGGAGGACAAGGCGGCGGCGGAGATCGCGCGTTTGG
AAGACAAGCGGACAATGTCGGAAGTGTTTTGGAAGGCGGAGGTGGAGCGG
TTCAAGCGCGAGATCCAACTGGCTTACACTCAAGACTATGAGCCTTACCA
GGCCGCGCTTGTGGACAAACGTAAAAAGAGGGGAGGAACCGGCGGATCGG
AGGAGAAGGAAGAGGAGAATTAGGATTCGGGGCCCTACCTTAATATAAGA
AAGGGACGCGTGCTGCGGGGGGGCTTCTCCTCGACAGTCCACACGGGGCC
AGGCACGAGCAGTGGAGAGGAGCTCGGTAAGAAGTGGGCGACAATCTTCC
AAGGCATTGGCGCGGTGCTAGGGGTTGCTGGTGCTACCGCTGTGGTCGTG
CGTACTTTCGACCAGACTGAGATGGCGACGGAGATAAAATGCTTGCCTTG
CTGCTTGCTGCCATCATCAACCACGACCACCAGGGGGACAACATGCTTCG
GCGCTTCACGGCGAAGGCTGGGGCCATGGCACGGAGAGGGAGCACGCTTC
CCGGGCCAG
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Synonyms
Publications