jgi.p|Nanoce1779_2|580277, mRNA_2414 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|580277
Unique Name	mRNA_2414
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2061
Alignment location	scaffold_5:281780..284096 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	580363
Track	FilteredModels2
ProteinId	580277

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:281780..284096 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580277	gene_2414	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580277	mRNA_2414-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2414	CDS_2414	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:281780..284096+
coding sequence from alignment at scaffold_5:281780..284096+

mRNA sequence

>mRNA_2414 ID=mRNA_2414|Name=jgi.p|Nanoce1779_2|580277|organism=Nannochloropsis oceanica|type=mRNA|length=2061bp
CATCATCACTCCTCGCATTCAACCGGGGTCGAGAATGGGGCAGTGGCCAT
TACTAGGACTCGCATCAATCCCCTCTCCATGGGGCCCTTAAACGCAGCCA
ACCTCAAGAAGCAGCAAAAAGGAGGCAAGAAAGCTGGCAAGGGCGGCGCA
GGCAAAAGCAAAGGTGGTGGCGGCAGCGGCGGCGGTGGAAATGGTAACAG
CGTGATCGACACGAACAAGCGCGAGTACATTTATCAAATGCATCGCATGA
GCAAAACCTTTGGAAAAGGCGACGGGTCCAAGCCGGTGCTAAAGGATATT
TCACTCTCCTTCTACCCGGGCGTGAAAATCGGTGTGTTGGGTGGGAATGG
CGCAGGAAAGTCTACCCTTATCAAAATCATGGCTGGGTTGGACGAGAATT
TCAACGGCGAGGCCCGGCCGGCGCGCTGGGCCAAGGTAGGGTACCTCCCT
CAGGAACCGCAGCTTGAAGGGCCGACAGTGGCAGACGAGTTAGAAAGGGC
CGTAGTAGAAACACGGGGGCTATTGAAAGAATATGCCGGCGTGAGTGGTT
CGTTGGGCAAGGCCGATTTGACACCGGAGGAGCAAGAGAAGCTGAGCACT
CGCATGGACGAGTTGCAGAGTGCGATCGAGGCGAAGAACGGGTGGGAGTT
GGATAGGACGCTGGAGAGGGCGATGGATGCATTGCGGTGCCCACCATCCG
ATGCACTGGTCGATCAGTTGTCCGGAGGAGAGCGCCGCCGGGTAGCATTG
TGCCACCTCTTGCTGCAGCGCCCGGACTTGTTGCTCCTCGACGAGCCCAC
GAATCATTTAGACTGCGAATCTGTGGCGTGGCTCGAGGACTTTCTGCGAA
CGTATACCGGAACGGTGGTCGCCATCACGCATGACCGTTATTTCCTTGAC
AATGTTGCTGGTTGGATCCTTGAACTAGACCGGGGGGAGGGGATTCCCTT
TGAGGGCAACTACTCCGGCTGGCTCGAGCGCAAGGCCAAGCGGATGGAGC
AGGAGGGGCGTGAGGACGATAAGCGCAAAAAAGCCCTTGCCCGCGAGTTG
GAATGGATGCGTATGTCCCCCAAGGCGCGTCAGACCAAGGCCAAGGCACG
TATCACGAGCTATGAGCAGATGGTGCAAGCCGACGAGGATGCGCGGCAGA
ACGCTCGTGGCGGGCCCACCAACATTTACATCCCTCCCGGCCCTCCCTTG
GCGCAGAAAGTCGTCGAAGCGGAAGGTCTCGGCAAGTGGTACGGCGACCG
CTTGCTCTGGGACAAAGTATCGTTCTCGCTGCCCCGCGGTGGGGTGGTGG
GCGTGATAGGCGCCAATGGCGTGGGAAAGTCGACGCTGTTCAAGCTCATT
GCCGGGTTGGAAAAGCCAGACCAAGGAACGCTCACCATCAGCGACAAGGT
CAAGGTTATGTACGTTGATCAGAACCGTGAGGGGGTGTCGGATCCGAACA
AAACCGTGTTCGATACCATCGCGGAGGGTGCAGAGGAGATCGAGCTGGGA
AATAGGGTGGTGAATGCTCGTCAGTATGCAGGCTGGTTCAACTTCAAGGG
GGCCGACCAGCAGAAGCCCGTGGGGGTGTTGTCTGGGGGAGAGAGGAATA
GATTGTGCTTGGCACAGACCCTTAAGCAAGGAGGCAACCTCTTGTTGCTC
GATGAGCCTACAAATGACTTGGACAATGACACCTTACGTGCACTGGAGGA
TGCGATTGAGAACTACGCAGGGTGCGCCGTCATCATTTCTCACGACCGCT
ACTTCTTAGATCGGGTCGCTACACATATTTTGGCCTTCGAGGACGACGGA
AATGTCACGTGGTTTGAGGGCGATTTTAGCGAGTACCAGAGGGACTTGAT
GGCGCGAAATGGAGGGGTGGAGCCCAAGAGGCCTAAGTTCAGGCCTTTGT
CCACAGTTTAAAGTGCCCACAGTTTAAGGCTGTGAGATCGGTGAGAGAGG
GCGAGGGAGTGAGGAATGAGTGGATGGAGGATATTTGATATAAAGGTGAG
GATTAAATCGACGAATACGGGATATAGAGAAGGTAGAAGTGAATTAATGC
TTAATACAAAA

protein sequence of jgi.p|Nanoce1779_2|580277

>mRNA_2414-protein ID=mRNA_2414-protein|Name=jgi.p|Nanoce1779_2|580277|organism=Nannochloropsis oceanica|type=polypeptide|length=611bp
MGPLNAANLKKQQKGGKKAGKGGAGKSKGGGGSGGGGNGNSVIDTNKREY
IYQMHRMSKTFGKGDGSKPVLKDISLSFYPGVKIGVLGGNGAGKSTLIKI
MAGLDENFNGEARPARWAKVGYLPQEPQLEGPTVADELERAVVETRGLLK
EYAGVSGSLGKADLTPEEQEKLSTRMDELQSAIEAKNGWELDRTLERAMD
ALRCPPSDALVDQLSGGERRRVALCHLLLQRPDLLLLDEPTNHLDCESVA
WLEDFLRTYTGTVVAITHDRYFLDNVAGWILELDRGEGIPFEGNYSGWLE
RKAKRMEQEGREDDKRKKALARELEWMRMSPKARQTKAKARITSYEQMVQ
ADEDARQNARGGPTNIYIPPGPPLAQKVVEAEGLGKWYGDRLLWDKVSFS
LPRGGVVGVIGANGVGKSTLFKLIAGLEKPDQGTLTISDKVKVMYVDQNR
EGVSDPNKTVFDTIAEGAEEIELGNRVVNARQYAGWFNFKGADQQKPVGV
LSGGERNRLCLAQTLKQGGNLLLLDEPTNDLDNDTLRALEDAIENYAGCA
VIISHDRYFLDRVATHILAFEDDGNVTWFEGDFSEYQRDLMARNGGVEPK
RPKFRPLSTV*

mRNA from alignment at scaffold_5:281780..284096+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2414 ID=mRNA_2414|Name=jgi.p|Nanoce1779_2|580277|organism=Nannochloropsis oceanica|type=mRNA|length=2317bp|location=Sequence derived from alignment at scaffold_5:281780..284096+ (Nannochloropsis oceanica)
CATCATCACTCCTCGCATTCAACCGGGGTCGAGAATGGGGCAGTGGCCAT
TACTAGGGTACGTTTGGGCGCCATGTGCCGTATGCATTTCTGTGTGTAAA
TTGTGCGTTTGCCTGTCGGGTCAAGACATGTTTTCGGGTGAGGGGTTTCA
ATCTCAGTAGCTGTTGCTGCTGCTGCTGCTGCTGCATTTTTTACCATGTT
ATTTCATAACATTACCACCATACCTCCTGCATTTTGGGCTTGTACTGGTA
ATTGGTAATCATTTCCTATCATCACTCACCTTATCTCTCTCCCGAATTTC
TACCAAATCCTAGACTCGCATCAATCCCCTCTCCATGGGGCCCTTAAACG
CAGCCAACCTCAAGAAGCAGCAAAAAGGAGGCAAGAAAGCTGGCAAGGGC
GGCGCAGGCAAAAGCAAAGGTGGTGGCGGCAGCGGCGGCGGTGGAAATGG
TAACAGCGTGATCGACACGAACAAGCGCGAGTACATTTATCAAATGCATC
GCATGAGCAAAACCTTTGGAAAAGGCGACGGGTCCAAGCCGGTGCTAAAG
GATATTTCACTCTCCTTCTACCCGGGCGTGAAAATCGGTGTGTTGGGTGG
GAATGGCGCAGGAAAGTCTACCCTTATCAAAATCATGGCTGGGTTGGACG
AGAATTTCAACGGCGAGGCCCGGCCGGCGCGCTGGGCCAAGGTAGGGTAC
CTCCCTCAGGAACCGCAGCTTGAAGGGCCGACAGTGGCAGACGAGTTAGA
AAGGGCCGTAGTAGAAACACGGGGGCTATTGAAAGAATATGCCGGCGTGA
GTGGTTCGTTGGGCAAGGCCGATTTGACACCGGAGGAGCAAGAGAAGCTG
AGCACTCGCATGGACGAGTTGCAGAGTGCGATCGAGGCGAAGAACGGGTG
GGAGTTGGATAGGACGCTGGAGAGGGCGATGGATGCATTGCGGTGCCCAC
CATCCGATGCACTGGTCGATCAGTTGTCCGGAGGAGAGCGCCGCCGGGTA
GCATTGTGCCACCTCTTGCTGCAGCGCCCGGACTTGTTGCTCCTCGACGA
GCCCACGAATCATTTAGACTGCGAATCTGTGGCGTGGCTCGAGGACTTTC
TGCGAACGTATACCGGAACGGTGGTCGCCATCACGCATGACCGTTATTTC
CTTGACAATGTTGCTGGTTGGATCCTTGAACTAGACCGGGGGGAGGGGAT
TCCCTTTGAGGGCAACTACTCCGGCTGGCTCGAGCGCAAGGCCAAGCGGA
TGGAGCAGGAGGGGCGTGAGGACGATAAGCGCAAAAAAGCCCTTGCCCGC
GAGTTGGAATGGATGCGTATGTCCCCCAAGGCGCGTCAGACCAAGGCCAA
GGCACGTATCACGAGCTATGAGCAGATGGTGCAAGCCGACGAGGATGCGC
GGCAGAACGCTCGTGGCGGGCCCACCAACATTTACATCCCTCCCGGCCCT
CCCTTGGCGCAGAAAGTCGTCGAAGCGGAAGGTCTCGGCAAGTGGTACGG
CGACCGCTTGCTCTGGGACAAAGTATCGTTCTCGCTGCCCCGCGGTGGGG
TGGTGGGCGTGATAGGCGCCAATGGCGTGGGAAAGTCGACGCTGTTCAAG
CTCATTGCCGGGTTGGAAAAGCCAGACCAAGGAACGCTCACCATCAGCGA
CAAGGTCAAGGTTATGTACGTTGATCAGAACCGTGAGGGGGTGTCGGATC
CGAACAAAACCGTGTTCGATACCATCGCGGAGGGTGCAGAGGAGATCGAG
CTGGGAAATAGGGTGGTGAATGCTCGTCAGTATGCAGGCTGGTTCAACTT
CAAGGGGGCCGACCAGCAGAAGCCCGTGGGGGTGTTGTCTGGGGGAGAGA
GGAATAGATTGTGCTTGGCACAGACCCTTAAGCAAGGAGGCAACCTCTTG
TTGCTCGATGAGCCTACAAATGACTTGGACAATGACACCTTACGTGCACT
GGAGGATGCGATTGAGAACTACGCAGGGTGCGCCGTCATCATTTCTCACG
ACCGCTACTTCTTAGATCGGGTCGCTACACATATTTTGGCCTTCGAGGAC
GACGGAAATGTCACGTGGTTTGAGGGCGATTTTAGCGAGTACCAGAGGGA
CTTGATGGCGCGAAATGGAGGGGTGGAGCCCAAGAGGCCTAAGTTCAGGC
CTTTGTCCACAGTTTAAAGTGCCCACAGTTTAAGGCTGTGAGATCGGTGA
GAGAGGGCGAGGGAGTGAGGAATGAGTGGATGGAGGATATTTGATATAAA
GGTGAGGATTAAATCGACGAATACGGGATATAGAGAAGGTAGAAGTGAAT
TAATGCTTAATACAAAA

Coding sequence (CDS) from alignment at scaffold_5:281780..284096+

>mRNA_2414 ID=mRNA_2414|Name=jgi.p|Nanoce1779_2|580277|organism=Nannochloropsis oceanica|type=CDS|length=1833bp|location=Sequence derived from alignment at scaffold_5:281780..284096+ (Nannochloropsis oceanica)
ATGGGGCCCTTAAACGCAGCCAACCTCAAGAAGCAGCAAAAAGGAGGCAA
GAAAGCTGGCAAGGGCGGCGCAGGCAAAAGCAAAGGTGGTGGCGGCAGCG
GCGGCGGTGGAAATGGTAACAGCGTGATCGACACGAACAAGCGCGAGTAC
ATTTATCAAATGCATCGCATGAGCAAAACCTTTGGAAAAGGCGACGGGTC
CAAGCCGGTGCTAAAGGATATTTCACTCTCCTTCTACCCGGGCGTGAAAA
TCGGTGTGTTGGGTGGGAATGGCGCAGGAAAGTCTACCCTTATCAAAATC
ATGGCTGGGTTGGACGAGAATTTCAACGGCGAGGCCCGGCCGGCGCGCTG
GGCCAAGGTAGGGTACCTCCCTCAGGAACCGCAGCTTGAAGGGCCGACAG
TGGCAGACGAGTTAGAAAGGGCCGTAGTAGAAACACGGGGGCTATTGAAA
GAATATGCCGGCGTGAGTGGTTCGTTGGGCAAGGCCGATTTGACACCGGA
GGAGCAAGAGAAGCTGAGCACTCGCATGGACGAGTTGCAGAGTGCGATCG
AGGCGAAGAACGGGTGGGAGTTGGATAGGACGCTGGAGAGGGCGATGGAT
GCATTGCGGTGCCCACCATCCGATGCACTGGTCGATCAGTTGTCCGGAGG
AGAGCGCCGCCGGGTAGCATTGTGCCACCTCTTGCTGCAGCGCCCGGACT
TGTTGCTCCTCGACGAGCCCACGAATCATTTAGACTGCGAATCTGTGGCG
TGGCTCGAGGACTTTCTGCGAACGTATACCGGAACGGTGGTCGCCATCAC
GCATGACCGTTATTTCCTTGACAATGTTGCTGGTTGGATCCTTGAACTAG
ACCGGGGGGAGGGGATTCCCTTTGAGGGCAACTACTCCGGCTGGCTCGAG
CGCAAGGCCAAGCGGATGGAGCAGGAGGGGCGTGAGGACGATAAGCGCAA
AAAAGCCCTTGCCCGCGAGTTGGAATGGATGCGTATGTCCCCCAAGGCGC
GTCAGACCAAGGCCAAGGCACGTATCACGAGCTATGAGCAGATGGTGCAA
GCCGACGAGGATGCGCGGCAGAACGCTCGTGGCGGGCCCACCAACATTTA
CATCCCTCCCGGCCCTCCCTTGGCGCAGAAAGTCGTCGAAGCGGAAGGTC
TCGGCAAGTGGTACGGCGACCGCTTGCTCTGGGACAAAGTATCGTTCTCG
CTGCCCCGCGGTGGGGTGGTGGGCGTGATAGGCGCCAATGGCGTGGGAAA
GTCGACGCTGTTCAAGCTCATTGCCGGGTTGGAAAAGCCAGACCAAGGAA
CGCTCACCATCAGCGACAAGGTCAAGGTTATGTACGTTGATCAGAACCGT
GAGGGGGTGTCGGATCCGAACAAAACCGTGTTCGATACCATCGCGGAGGG
TGCAGAGGAGATCGAGCTGGGAAATAGGGTGGTGAATGCTCGTCAGTATG
CAGGCTGGTTCAACTTCAAGGGGGCCGACCAGCAGAAGCCCGTGGGGGTG
TTGTCTGGGGGAGAGAGGAATAGATTGTGCTTGGCACAGACCCTTAAGCA
AGGAGGCAACCTCTTGTTGCTCGATGAGCCTACAAATGACTTGGACAATG
ACACCTTACGTGCACTGGAGGATGCGATTGAGAACTACGCAGGGTGCGCC
GTCATCATTTCTCACGACCGCTACTTCTTAGATCGGGTCGCTACACATAT
TTTGGCCTTCGAGGACGACGGAAATGTCACGTGGTTTGAGGGCGATTTTA
GCGAGTACCAGAGGGACTTGATGGCGCGAAATGGAGGGGTGGAGCCCAAG
AGGCCTAAGTTCAGGCCTTTGTCCACAGTTTAA

Synonyms

Publications