jgi.p|Nanoce1779_2|580073, mRNA_2354 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580073
Unique NamemRNA_2354
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length703
Alignment locationscaffold_5:132792..133494 +

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Properties
Property NameValue
TranscriptId580159
TrackFilteredModels2
ProteinId580073
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:132792..133494 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580073gene_2354Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580073mRNA_2354-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2354CDS_2354Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2354 ID=mRNA_2354|Name=jgi.p|Nanoce1779_2|580073|organism=Nannochloropsis oceanica|type=mRNA|length=703bp
CTCGCTTCCTCCTTCACTTTCCTTATCCCCAATGGGTGTACATGTATGTA
TGTATGTATATATATGTGTGTGTGTGTGTGTGTATGTGTGTGCAGCCTTC
TTTCCTCCTTTTTGTCTTCTGCCACTCACTCATGTGCGGCCTGATTGTTG
AAAATGAGACTGCGTCCTCTTTCCCGCCATTTGTATTGCTGCTGGTATTG
TCACCCCCTCTGCAGCTACTCCGACGTCTTCAGTCTTCTATCTTTCCCTT
TCGCCTTCTGCCACTGACTCATTTCCTCCCCCTTTCCACTCGCCCTACTT
CACAATCTACTCAGACAACCACAAATCATTCCATCAAGCGCACTTACACC
AAGCGCAATCACCCTTCATCTTCTTGCTTCTACCGCCCCCTAATTATTAT
TTCAATCACCTTACAAGAGCTTGCCTTGGCCTTGACCACGCCCGTCGCCC
TCTCGTTCGCATTCTCTAATTTCTCATCCCTCCTTATTCTTTCCCTTTCT
CTCGTTGATAGACACAAGCCGATAAAGAAACTATACTGACTGCCAAACAC
TCTCATTCTCTCCCTCCCTCCCACCCTCCCCTCCTCATCTTTCCCCATCC
TTCAGCGCCTGCACCGCTTCCTCCTCCTCCCCCTCTTCCTCCTCCTCCTC
CTCCCCCTCCAAGCTCGCTCCACAATCGCTACTCCCCCCTTCCTCCGTCG
TCG
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protein sequence of jgi.p|Nanoce1779_2|580073

>mRNA_2354-protein ID=mRNA_2354-protein|Name=jgi.p|Nanoce1779_2|580073|organism=Nannochloropsis oceanica|type=polypeptide|length=166bp
MYVCMYIYVCVCVCMCVQPSFLLFVFCHSLMCGLIVENETASSFPPFVLL
LVLSPPLQLLRRLQSSIFPFRLLPLTHFLPLSTRPTSQSTQTTTNHSIKR
TYTKRNHPSSSCFYRPLIIISITLQELALALTTPVALSFAFSNFSSLLIL
SLSLVDRHKPIKKLY*
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mRNA from alignment at scaffold_5:132792..133494+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2354 ID=mRNA_2354|Name=jgi.p|Nanoce1779_2|580073|organism=Nannochloropsis oceanica|type=mRNA|length=703bp|location=Sequence derived from alignment at scaffold_5:132792..133494+ (Nannochloropsis oceanica)
CTCGCTTCCTCCTTCACTTTCCTTATCCCCAATGGGTGTACATGTATGTA
TGTATGTATATATATGTGTGTGTGTGTGTGTGTATGTGTGTGCAGCCTTC
TTTCCTCCTTTTTGTCTTCTGCCACTCACTCATGTGCGGCCTGATTGTTG
AAAATGAGACTGCGTCCTCTTTCCCGCCATTTGTATTGCTGCTGGTATTG
TCACCCCCTCTGCAGCTACTCCGACGTCTTCAGTCTTCTATCTTTCCCTT
TCGCCTTCTGCCACTGACTCATTTCCTCCCCCTTTCCACTCGCCCTACTT
CACAATCTACTCAGACAACCACAAATCATTCCATCAAGCGCACTTACACC
AAGCGCAATCACCCTTCATCTTCTTGCTTCTACCGCCCCCTAATTATTAT
TTCAATCACCTTACAAGAGCTTGCCTTGGCCTTGACCACGCCCGTCGCCC
TCTCGTTCGCATTCTCTAATTTCTCATCCCTCCTTATTCTTTCCCTTTCT
CTCGTTGATAGACACAAGCCGATAAAGAAACTATACTGACTGCCAAACAC
TCTCATTCTCTCCCTCCCTCCCACCCTCCCCTCCTCATCTTTCCCCATCC
TTCAGCGCCTGCACCGCTTCCTCCTCCTCCCCCTCTTCCTCCTCCTCCTC
CTCCCCCTCCAAGCTCGCTCCACAATCGCTACTCCCCCCTTCCTCCGTCG
TCG
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Coding sequence (CDS) from alignment at scaffold_5:132792..133494+

>mRNA_2354 ID=mRNA_2354|Name=jgi.p|Nanoce1779_2|580073|organism=Nannochloropsis oceanica|type=CDS|length=498bp|location=Sequence derived from alignment at scaffold_5:132792..133494+ (Nannochloropsis oceanica)
ATGTATGTATGTATGTATATATATGTGTGTGTGTGTGTGTGTATGTGTGT
GCAGCCTTCTTTCCTCCTTTTTGTCTTCTGCCACTCACTCATGTGCGGCC
TGATTGTTGAAAATGAGACTGCGTCCTCTTTCCCGCCATTTGTATTGCTG
CTGGTATTGTCACCCCCTCTGCAGCTACTCCGACGTCTTCAGTCTTCTAT
CTTTCCCTTTCGCCTTCTGCCACTGACTCATTTCCTCCCCCTTTCCACTC
GCCCTACTTCACAATCTACTCAGACAACCACAAATCATTCCATCAAGCGC
ACTTACACCAAGCGCAATCACCCTTCATCTTCTTGCTTCTACCGCCCCCT
AATTATTATTTCAATCACCTTACAAGAGCTTGCCTTGGCCTTGACCACGC
CCGTCGCCCTCTCGTTCGCATTCTCTAATTTCTCATCCCTCCTTATTCTT
TCCCTTTCTCTCGTTGATAGACACAAGCCGATAAAGAAACTATACTGA
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Synonyms
Publications