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Properties
| Property Name | Value |
|---|
| TranscriptId | 581177 |
| Track | FilteredModels2 |
| ProteinId | 581091 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_5 | supercontig | scaffold_5:866131..868636 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2659 ID=mRNA_2659|Name=jgi.p|Nanoce1779_2|581091|organism=Nannochloropsis oceanica|type=mRNA|length=2042bp
ACAGCTCGTCAAGCACTTTAGCGCGATTCCCATGACCACATTTGAACGCA
GTACGTCTTGGAACTCGACGAAAGACGACGCTTTTGGCTTGGAATTCGAA
TTCGGTGACCTGCTGGTGGATACGGACCACTCCCACTCGTTGATGGAAGT
GACGGCCATGCTTGAGCAGGTCGACGGCATGCCCTGTGGATCCTTCACCG
TGGAGCAAGAAACACCGGTGGCAACGCACCATCACTCCCAACAATCTAGC
TTGAACGCCACTGGCTTCGCCCCCAAGCAGCAGCAAATGCAGCAACAAAC
ACCACAAGCCCCACAACGGAGACCAAGCAGCAGCGTAGGTCACCTGCAGG
CGTTGAGGAATGCCTCCTCCTCCAAGAAAAACGCCTACCCTCTCACTCCC
GTGCCTTCTCCTTGCGCGCGATTCCAGCATCAAAATCACCACCAACAACC
CATGCAGGACGAGAATGCCTCTCCGGTTGAGCATGGCAGCGGAAGCAGCA
TGCCATGCAGCAACATTTCCTCGTCTCATCATGCGGGAGGTAGCACCACC
AGCAACAGCGGTGCGAAGAAGGTTTTCGCCCCGCGGATCAACGTCCGTCT
CATGCCCCAAAACTCCGCGACTGCCGCACGGGTCCGGCAAGCCGGGTACA
ACCCCAAGCTAGAGCTTTCTACGCCCTTGGGCAAGCGCGTAGGTTTTTTC
ATCGACCATTTGGCCTCGAAATGGTCCGACGTCCCGGGCATCGCCTCCCT
GTCGTTGCGTTTAGCCGTCTCCCCCACCCAACAGCTGGAGGAGCACGTGG
CCTTGCGTTCTTTGAGCGCATACTTTGCCGCGGCTAAGATGGTGGATGCT
GCCACGGGTGCGGGTGGGGCGACGCCGTCGGCGGTGCTACAGTTGCACTA
TGTGCTGCGGCAGGATATGATGAATGAGTGGCACCCTGAGGAGAATTCGC
TTTTTGACGCCTTCGCTGCCTCAGGTCTGGACCAGCTGCCGAGCTCTGCT
CCTACCGCCCCCTCAATCTATGTCACTAGGACCGCCGTCGATACTCTGGT
TTATCGACCGCAACAGCAAGAGCAAGATCAGCAGAAGAAGCGGCGCAAGC
GCGTGTCGCTCACCACGGGAGATGCCTTCAATCGGAACGAGACCTTTGTC
AACGCGGCCACGCTTGTCATCTCCACACCGGCTCCCATCAAGCCCAGCCC
TTTCTCCTCCTCCTCCTCCTCCTTTGAGTCGTCGGGCGACAGCAGCGTAA
CGCAAGCCGGGCACCCGGGGTCAGGAAAAAAGCGCCGCCGCATCCGCCCA
ACGCTGCTGCCGCCGGGAGAAGTGGTGGCTACAAGTCCTAGCTTTTTGCA
GGCACAGTGTGGGATTGGGAGCCTCACCTCCGAGTCATCTCGTCAGTCAT
CGTTTTCCAATTCGGGAGATGACTCGCAGCAATAGAGAGCGGAAGGAAGA
GGAGAGGAGGGTTGAGGAGGAGAGCGAGTCATGATTTTTTGTGCTAAATC
ATGGTCACGAGAATCAGCACTTGTTTTAAAAGAAAGGTGACAGGGGGAAG
CGGATTAGGAAGAAGAAGAGGATTTGATTTGTGCAGGCACAAATCTGGCA
ATCAAGCAAGAATAAAACTGAAGCGCACGCTAAAAGAAAGATGTGTGTGC
TGCTGTGTATGAATGTATCATGAGAGATTTCAAAACAATGTGATAAGATA
AGAGATTGCGTGTACACCAACACGCACACACACACACACACGGATACATA
TAAACCAACCCACTCCCACATACGATGAGAGAAGGAGAATGGAGAGATAG
AGAGATAAATGACTTATTCATCCGTAGAGAGGAACAGAATATAAATGAAA
GTACCAGCACCCTTCATATGTCTTTTGAAACCAATAGTCAGTCATTCATG
TCATTTCTGCATCGTCATTGTCATACAATAGTGCTCACATCCCCGTCATC
TCATCATCGGCAGCGATACCAAAAACAATAAAGCACGCATCATGAGCACC
CGCACACATTGATATAGAAGAAGGGTAAAACGAAAGCGGAAG back to topprotein sequence of jgi.p|Nanoce1779_2|581091 >mRNA_2659-protein ID=mRNA_2659-protein|Name=jgi.p|Nanoce1779_2|581091|organism=Nannochloropsis oceanica|type=polypeptide|length=468bp
MTTFERSTSWNSTKDDAFGLEFEFGDLLVDTDHSHSLMEVTAMLEQVDGM
PCGSFTVEQETPVATHHHSQQSSLNATGFAPKQQQMQQQTPQAPQRRPSS
SVGHLQALRNASSSKKNAYPLTPVPSPCARFQHQNHHQQPMQDENASPVE
HGSGSSMPCSNISSSHHAGGSTTSNSGAKKVFAPRINVRLMPQNSATAAR
VRQAGYNPKLELSTPLGKRVGFFIDHLASKWSDVPGIASLSLRLAVSPTQ
QLEEHVALRSLSAYFAAAKMVDAATGAGGATPSAVLQLHYVLRQDMMNEW
HPEENSLFDAFAASGLDQLPSSAPTAPSIYVTRTAVDTLVYRPQQQEQDQ
QKKRRKRVSLTTGDAFNRNETFVNAATLVISTPAPIKPSPFSSSSSSFES
SGDSSVTQAGHPGSGKKRRRIRPTLLPPGEVVATSPSFLQAQCGIGSLTS
ESSRQSSFSNSGDDSQQ* back to topmRNA from alignment at scaffold_5:866131..868636- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2659 ID=mRNA_2659|Name=jgi.p|Nanoce1779_2|581091|organism=Nannochloropsis oceanica|type=mRNA|length=2506bp|location=Sequence derived from alignment at scaffold_5:866131..868636- (Nannochloropsis oceanica)
ACAGCTCGTCAAGCACTTTAGCGCGATTCCCATGACCACATTTGAACGCA
GTACGTCTTGGAACTCGACGAAAGGTACGTGTGTTCCCCATGCATGAGTT
GACGTGGCATTGTCTCACCTCTTTTTACCGACAGCATTGCCACCTAAGGT
CTTTTCCCTCCCGTTTTCCGTGTGTTCCGACTGCCCTTCTGTTCGCCACG
CCACACCCAGGTTTTCCGCGCCTTTGGCTCACCTTCCCAACAACCGTACC
CACCCAACAACACAGACGACGCTTTTGGCTTGGAATTCGAATTCGGTGAC
CTGCTGGTGGATACGGACCACTCCCACTCGTTGATGGAAGTGACGGCCAT
GGTGAGTGCGGGCACGGGTTCAGGAGGAGTTGAGAATTGCAAGTATGACG
CGCAAGGGTATACGCAACCAATTGGGAATGCTGCGACACCAAACCTTACA
CTGGAATCATGTTGCTAACATTGTCTCTTTGCGGGACTTGAGCCCACACT
CTCAGTTGAGCGGCGAGCACGTGGCGGGAAAATAGAACCCACTTTGGAAG
ATTTCTTCCCTTATTCATTCATCTGTCCGCTCACCTATGTGACACGAAAC
TCTCCTATCTACCCACAACCACAGCTTGAGCAGGTCGACGGCATGCCCTG
TGGATCCTTCACCGTGGAGCAAGAAACACCGGTGGCAACGCACCATCACT
CCCAACAATCTAGCTTGAACGCCACTGGCTTCGCCCCCAAGCAGCAGCAA
ATGCAGCAACAAACACCACAAGCCCCACAACGGAGACCAAGCAGCAGCGT
AGGTCACCTGCAGGCGTTGAGGAATGCCTCCTCCTCCAAGAAAAACGCCT
ACCCTCTCACTCCCGTGCCTTCTCCTTGCGCGCGATTCCAGCATCAAAAT
CACCACCAACAACCCATGCAGGACGAGAATGCCTCTCCGGTTGAGCATGG
CAGCGGAAGCAGCATGCCATGCAGCAACATTTCCTCGTCTCATCATGCGG
GAGGTAGCACCACCAGCAACAGCGGTGCGAAGAAGGTTTTCGCCCCGCGG
ATCAACGTCCGTCTCATGCCCCAAAACTCCGCGACTGCCGCACGGGTCCG
GCAAGCCGGGTACAACCCCAAGCTAGAGCTTTCTACGCCCTTGGGCAAGC
GCGTAGGTTTTTTCATCGACCATTTGGCCTCGAAATGGTCCGACGTCCCG
GGCATCGCCTCCCTGTCGTTGCGTTTAGCCGTCTCCCCCACCCAACAGCT
GGAGGAGCACGTGGCCTTGCGTTCTTTGAGCGCATACTTTGCCGCGGCTA
AGATGGTGGATGCTGCCACGGGTGCGGGTGGGGCGACGCCGTCGGCGGTG
CTACAGTTGCACTATGTGCTGCGGCAGGATATGATGAATGAGTGGCACCC
TGAGGAGAATTCGCTTTTTGACGCCTTCGCTGCCTCAGGTCTGGACCAGC
TGCCGAGCTCTGCTCCTACCGCCCCCTCAATCTATGTCACTAGGACCGCC
GTCGATACTCTGGTTTATCGACCGCAACAGCAAGAGCAAGATCAGCAGAA
GAAGCGGCGCAAGCGCGTGTCGCTCACCACGGGAGATGCCTTCAATCGGA
ACGAGACCTTTGTCAACGCGGCCACGCTTGTCATCTCCACACCGGCTCCC
ATCAAGCCCAGCCCTTTCTCCTCCTCCTCCTCCTCCTTTGAGTCGTCGGG
CGACAGCAGCGTAACGCAAGCCGGGCACCCGGGGTCAGGAAAAAAGCGCC
GCCGCATCCGCCCAACGCTGCTGCCGCCGGGAGAAGTGGTGGCTACAAGT
CCTAGCTTTTTGCAGGCACAGTGTGGGATTGGGAGCCTCACCTCCGAGTC
ATCTCGTCAGTCATCGTTTTCCAATTCGGGAGATGACTCGCAGCAATAGA
GAGCGGAAGGAAGAGGAGAGGAGGGTTGAGGAGGAGAGCGAGTCATGATT
TTTTGTGCTAAATCATGGTCACGAGAATCAGCACTTGTTTTAAAAGAAAG
GTGACAGGGGGAAGCGGATTAGGAAGAAGAAGAGGATTTGATTTGTGCAG
GCACAAATCTGGCAATCAAGCAAGAATAAAACTGAAGCGCACGCTAAAAG
AAAGATGTGTGTGCTGCTGTGTATGAATGTATCATGAGAGATTTCAAAAC
AATGTGATAAGATAAGAGATTGCGTGTACACCAACACGCACACACACACA
CACACGGATACATATAAACCAACCCACTCCCACATACGATGAGAGAAGGA
GAATGGAGAGATAGAGAGATAAATGACTTATTCATCCGTAGAGAGGAACA
GAATATAAATGAAAGTACCAGCACCCTTCATATGTCTTTTGAAACCAATA
GTCAGTCATTCATGTCATTTCTGCATCGTCATTGTCATACAATAGTGCTC
ACATCCCCGTCATCTCATCATCGGCAGCGATACCAAAAACAATAAAGCAC
GCATCATGAGCACCCGCACACATTGATATAGAAGAAGGGTAAAACGAAAG
CGGAAG back to topCoding sequence (CDS) from alignment at scaffold_5:866131..868636- >mRNA_2659 ID=mRNA_2659|Name=jgi.p|Nanoce1779_2|581091|organism=Nannochloropsis oceanica|type=CDS|length=4212bp|location=Sequence derived from alignment at scaffold_5:866131..868636- (Nannochloropsis oceanica)
CTTGAGCAGGTCGACGGCATGCCCTGTGGATCCTTCACCGTGGAGCAAGA
AACACCGGTGGCAACGCACCATCACTCCCAACAATCTAGCTTGAACGCCA
CTGGCTTCGCCCCCAAGCAGCAGCAAATGCAGCAACAAACACCACAAGCC
CCACAACGGAGACCAAGCAGCAGCGTAGGTCACCTGCAGGCGTTGAGGAA
TGCCTCCTCCTCCAAGAAAAACGCCTACCCTCTCACTCCCGTGCCTTCTC
CTTGCGCGCGATTCCAGCATCAAAATCACCACCAACAACCCATGCAGGAC
GAGAATGCCTCTCCGGTTGAGCATGGCAGCGGAAGCAGCATGCCATGCAG
CAACATTTCCTCGTCTCATCATGCGGGAGGTAGCACCACCAGCAACAGCG
GTGCGAAGAAGGTTTTCGCCCCGCGGATCAACGTCCGTCTCATGCCCCAA
AACTCCGCGACTGCCGCACGGGTCCGGCAAGCCGGGTACAACCCCAAGCT
AGAGCTTTCTACGCCCTTGGGCAAGCGCGTAGGTTTTTTCATCGACCATT
TGGCCTCGAAATGGTCCGACGTCCCGGGCATCGCCTCCCTGTCGTTGCGT
TTAGCCGTCTCCCCCACCCAACAGCTGGAGGAGCACGTGGCCTTGCGTTC
TTTGAGCGCATACTTTGCCGCGGCTAAGATGGTGGATGCTGCCACGGGTG
CGGGTGGGGCGACGCCGTCGGCGGTGCTACAGTTGCACTATGTGCTGCGG
CAGGATATGATGAATGAGTGGCACCCTGAGGAGAATTCGCTTTTTGACGC
CTTCGCTGCCTCAGGTCTGGACCAGCTGCCGAGCTCTGCTCCTACCGCCC
CCTCAATCTATGTCACTAGGACCGCCGTCGATACTCTGGTTTATCGACCG
CAACAGCAAGAGCAAGATCAGCAGAAGAAGCGGCGCAAGCGCGTGTCGCT
CACCACGGGAGATGCCTTCAATCGGAACGAGACCTTTGTCAACGCGGCCA
CGCTTGTCATCTCCACACCGGCTCCCATCAAGCCCAGCCCTTTCTCCTCC
TCCTCCTCCTCCTTTGAGTCGTCGGGCGACAGCAGCGTAACGCAAGCCGG
GCACCCGGGGTCAGGAAAAAAGCGCCGCCGCATCCGCCCAACGCTGCTGC
CGCCGGGAGAAGTGGTGGCTACAAGTCCTAGCTTTTTGCAGGCACAGTGT
GGGATTGGGAGCCTCACCTCCGAGTCATCTCGTCAGTCATCGTTTTCCAA
TTCGGGAGATGACTCGCAGCAATAGACGACGCTTTTGGCTTGGAATTCGA
ATTCGGTGACCTGCTGGTGGATACGGACCACTCCCACTCGTTGATGGAAG
TGACGGCCATGATGACCACATTTGAACGCAGTACGTCTTGGAACTCGACG
AAAGCTTGAGCAGGTCGACGGCATGCCCTGTGGATCCTTCACCGTGGAGC
AAGAAACACCGGTGGCAACGCACCATCACTCCCAACAATCTAGCTTGAAC
GCCACTGGCTTCGCCCCCAAGCAGCAGCAAATGCAGCAACAAACACCACA
AGCCCCACAACGGAGACCAAGCAGCAGCGTAGGTCACCTGCAGGCGTTGA
GGAATGCCTCCTCCTCCAAGAAAAACGCCTACCCTCTCACTCCCGTGCCT
TCTCCTTGCGCGCGATTCCAGCATCAAAATCACCACCAACAACCCATGCA
GGACGAGAATGCCTCTCCGGTTGAGCATGGCAGCGGAAGCAGCATGCCAT
GCAGCAACATTTCCTCGTCTCATCATGCGGGAGGTAGCACCACCAGCAAC
AGCGGTGCGAAGAAGGTTTTCGCCCCGCGGATCAACGTCCGTCTCATGCC
CCAAAACTCCGCGACTGCCGCACGGGTCCGGCAAGCCGGGTACAACCCCA
AGCTAGAGCTTTCTACGCCCTTGGGCAAGCGCGTAGGTTTTTTCATCGAC
CATTTGGCCTCGAAATGGTCCGACGTCCCGGGCATCGCCTCCCTGTCGTT
GCGTTTAGCCGTCTCCCCCACCCAACAGCTGGAGGAGCACGTGGCCTTGC
GTTCTTTGAGCGCATACTTTGCCGCGGCTAAGATGGTGGATGCTGCCACG
GGTGCGGGTGGGGCGACGCCGTCGGCGGTGCTACAGTTGCACTATGTGCT
GCGGCAGGATATGATGAATGAGTGGCACCCTGAGGAGAATTCGCTTTTTG
ACGCCTTCGCTGCCTCAGGTCTGGACCAGCTGCCGAGCTCTGCTCCTACC
GCCCCCTCAATCTATGTCACTAGGACCGCCGTCGATACTCTGGTTTATCG
ACCGCAACAGCAAGAGCAAGATCAGCAGAAGAAGCGGCGCAAGCGCGTGT
CGCTCACCACGGGAGATGCCTTCAATCGGAACGAGACCTTTGTCAACGCG
GCCACGCTTGTCATCTCCACACCGGCTCCCATCAAGCCCAGCCCTTTCTC
CTCCTCCTCCTCCTCCTTTGAGTCGTCGGGCGACAGCAGCGTAACGCAAG
CCGGGCACCCGGGGTCAGGAAAAAAGCGCCGCCGCATCCGCCCAACGCTG
CTGCCGCCGGGAGAAGTGGTGGCTACAAGTCCTAGCTTTTTGCAGGCACA
GTGTGGGATTGGGAGCCTCACCTCCGAGTCATCTCGTCAGTCATCGTTTT
CCAATTCGGGAGATGACTCGCAGCAATAGACGACGCTTTTGGCTTGGAAT
TCGAATTCGGTGACCTGCTGGTGGATACGGACCACTCCCACTCGTTGATG
GAAGTGACGGCCATGATGACCACATTTGAACGCAGTACGTCTTGGAACTC
GACGAAAGCTTGAGCAGGTCGACGGCATGCCCTGTGGATCCTTCACCGTG
GAGCAAGAAACACCGGTGGCAACGCACCATCACTCCCAACAATCTAGCTT
GAACGCCACTGGCTTCGCCCCCAAGCAGCAGCAAATGCAGCAACAAACAC
CACAAGCCCCACAACGGAGACCAAGCAGCAGCGTAGGTCACCTGCAGGCG
TTGAGGAATGCCTCCTCCTCCAAGAAAAACGCCTACCCTCTCACTCCCGT
GCCTTCTCCTTGCGCGCGATTCCAGCATCAAAATCACCACCAACAACCCA
TGCAGGACGAGAATGCCTCTCCGGTTGAGCATGGCAGCGGAAGCAGCATG
CCATGCAGCAACATTTCCTCGTCTCATCATGCGGGAGGTAGCACCACCAG
CAACAGCGGTGCGAAGAAGGTTTTCGCCCCGCGGATCAACGTCCGTCTCA
TGCCCCAAAACTCCGCGACTGCCGCACGGGTCCGGCAAGCCGGGTACAAC
CCCAAGCTAGAGCTTTCTACGCCCTTGGGCAAGCGCGTAGGTTTTTTCAT
CGACCATTTGGCCTCGAAATGGTCCGACGTCCCGGGCATCGCCTCCCTGT
CGTTGCGTTTAGCCGTCTCCCCCACCCAACAGCTGGAGGAGCACGTGGCC
TTGCGTTCTTTGAGCGCATACTTTGCCGCGGCTAAGATGGTGGATGCTGC
CACGGGTGCGGGTGGGGCGACGCCGTCGGCGGTGCTACAGTTGCACTATG
TGCTGCGGCAGGATATGATGAATGAGTGGCACCCTGAGGAGAATTCGCTT
TTTGACGCCTTCGCTGCCTCAGGTCTGGACCAGCTGCCGAGCTCTGCTCC
TACCGCCCCCTCAATCTATGTCACTAGGACCGCCGTCGATACTCTGGTTT
ATCGACCGCAACAGCAAGAGCAAGATCAGCAGAAGAAGCGGCGCAAGCGC
GTGTCGCTCACCACGGGAGATGCCTTCAATCGGAACGAGACCTTTGTCAA
CGCGGCCACGCTTGTCATCTCCACACCGGCTCCCATCAAGCCCAGCCCTT
TCTCCTCCTCCTCCTCCTCCTTTGAGTCGTCGGGCGACAGCAGCGTAACG
CAAGCCGGGCACCCGGGGTCAGGAAAAAAGCGCCGCCGCATCCGCCCAAC
GCTGCTGCCGCCGGGAGAAGTGGTGGCTACAAGTCCTAGCTTTTTGCAGG
CACAGTGTGGGATTGGGAGCCTCACCTCCGAGTCATCTCGTCAGTCATCG
TTTTCCAATTCGGGAGATGACTCGCAGCAATAGACGACGCTTTTGGCTTG
GAATTCGAATTCGGTGACCTGCTGGTGGATACGGACCACTCCCACTCGTT
GATGGAAGTGACGGCCATGATGACCACATTTGAACGCAGTACGTCTTGGA
ACTCGACGAAAG back to top
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