jgi.p|Nanoce1779_2|662350, mRNA_10478 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|662350
Unique NamemRNA_10478
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length746
Alignment locationscaffold_52:25484..26229 +

Link to JBrowse

Properties
Property NameValue
TranscriptId662436
TrackFilteredModels2
ProteinId662350
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_52supercontigscaffold_52:25484..26229 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|662350gene_10478Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|662350mRNA_10478-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10478CDS_10478Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10478 ID=mRNA_10478|Name=jgi.p|Nanoce1779_2|662350|organism=Nannochloropsis oceanica|type=mRNA|length=746bp
TCTGCTCAAGGTCTTTCTCATTACTGTACCCGCGTTTTCTTCGAGCCTTA
AATACATTTGAAAATGGACAAACAACCTCCCCTGCTCCCTCCTTCCCACC
TTTCCCCCTCCCTCGCTTCATTGCTTCGTTGGTGTGATGCCCCTCTTCTT
TATCGCTCCCTCCCTTCCTCCCTCTCTTGTCCTACTCCTGGGTGAAGGTG
GAGACGAAGACGTTGTAGTCCTCCAGGTTTAGAACCGCGTGCCACCACAT
GGAGGTAGAGCGACGCAAGATACGTGCTCGCATGTACAATCGCTTGTCTC
GCCACCGCCGCAATCAGTTGCATGGTGAGCTGCGCAGCGATGTGAGTCGC
ATGCTGATCTACAAGAATATTATTGAAGATGCACCGGACATGATATGTGT
CATCTCCCCCGACATTCAGAGCCAGGTGCTGTACATCAATAAGGCCGCTC
GAGGCGTCCTTGTCACTGGGCCCGCGCAGCTGGTGGGGTCAAGCTTCTGG
GACATCGTCCACACAGAAGATAAGATGGCGCTGTTCAGGGCTCTCACTAC
CGTCACTTTCTTCAAGTCGGCCGGAAAAGTAGAAAGGCTATGCTGTCTTG
TCGTCACGAACAACCCCGGTGTATATATGTCTGTCCGGATGACGCTAGCA
AATGGGATGCAGGGTATTGTCTGCGTAATGTGCAATGAAGATCATCTGTC
TACCATTTCGCGCGTGTTGCCTGATAGAAGGCCCTCTGTTATGTAG
back to top

protein sequence of jgi.p|Nanoce1779_2|662350

>mRNA_10478-protein ID=mRNA_10478-protein|Name=jgi.p|Nanoce1779_2|662350|organism=Nannochloropsis oceanica|type=polypeptide|length=166bp
MEVERRKIRARMYNRLSRHRRNQLHGELRSDVSRMLIYKNIIEDAPDMIC
VISPDIQSQVLYINKAARGVLVTGPAQLVGSSFWDIVHTEDKMALFRALT
TVTFFKSAGKVERLCCLVVTNNPGVYMSVRMTLANGMQGIVCVMCNEDHL
STISRVLPDRRPSVM*
back to top

mRNA from alignment at scaffold_52:25484..26229+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10478 ID=mRNA_10478|Name=jgi.p|Nanoce1779_2|662350|organism=Nannochloropsis oceanica|type=mRNA|length=746bp|location=Sequence derived from alignment at scaffold_52:25484..26229+ (Nannochloropsis oceanica)
TCTGCTCAAGGTCTTTCTCATTACTGTACCCGCGTTTTCTTCGAGCCTTA
AATACATTTGAAAATGGACAAACAACCTCCCCTGCTCCCTCCTTCCCACC
TTTCCCCCTCCCTCGCTTCATTGCTTCGTTGGTGTGATGCCCCTCTTCTT
TATCGCTCCCTCCCTTCCTCCCTCTCTTGTCCTACTCCTGGGTGAAGGTG
GAGACGAAGACGTTGTAGTCCTCCAGGTTTAGAACCGCGTGCCACCACAT
GGAGGTAGAGCGACGCAAGATACGTGCTCGCATGTACAATCGCTTGTCTC
GCCACCGCCGCAATCAGTTGCATGGTGAGCTGCGCAGCGATGTGAGTCGC
ATGCTGATCTACAAGAATATTATTGAAGATGCACCGGACATGATATGTGT
CATCTCCCCCGACATTCAGAGCCAGGTGCTGTACATCAATAAGGCCGCTC
GAGGCGTCCTTGTCACTGGGCCCGCGCAGCTGGTGGGGTCAAGCTTCTGG
GACATCGTCCACACAGAAGATAAGATGGCGCTGTTCAGGGCTCTCACTAC
CGTCACTTTCTTCAAGTCGGCCGGAAAAGTAGAAAGGCTATGCTGTCTTG
TCGTCACGAACAACCCCGGTGTATATATGTCTGTCCGGATGACGCTAGCA
AATGGGATGCAGGGTATTGTCTGCGTAATGTGCAATGAAGATCATCTGTC
TACCATTTCGCGCGTGTTGCCTGATAGAAGGCCCTCTGTTATGTAG
back to top

Coding sequence (CDS) from alignment at scaffold_52:25484..26229+

>mRNA_10478 ID=mRNA_10478|Name=jgi.p|Nanoce1779_2|662350|organism=Nannochloropsis oceanica|type=CDS|length=498bp|location=Sequence derived from alignment at scaffold_52:25484..26229+ (Nannochloropsis oceanica)
ATGGAGGTAGAGCGACGCAAGATACGTGCTCGCATGTACAATCGCTTGTC
TCGCCACCGCCGCAATCAGTTGCATGGTGAGCTGCGCAGCGATGTGAGTC
GCATGCTGATCTACAAGAATATTATTGAAGATGCACCGGACATGATATGT
GTCATCTCCCCCGACATTCAGAGCCAGGTGCTGTACATCAATAAGGCCGC
TCGAGGCGTCCTTGTCACTGGGCCCGCGCAGCTGGTGGGGTCAAGCTTCT
GGGACATCGTCCACACAGAAGATAAGATGGCGCTGTTCAGGGCTCTCACT
ACCGTCACTTTCTTCAAGTCGGCCGGAAAAGTAGAAAGGCTATGCTGTCT
TGTCGTCACGAACAACCCCGGTGTATATATGTCTGTCCGGATGACGCTAG
CAAATGGGATGCAGGGTATTGTCTGCGTAATGTGCAATGAAGATCATCTG
TCTACCATTTCGCGCGTGTTGCCTGATAGAAGGCCCTCTGTTATGTAG
back to top
Synonyms
Publications