jgi.p|Nanoce1779_2|662375, mRNA_10491 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|662375
Unique Name	mRNA_10491
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1484
Alignment location	scaffold_52:75867..77350 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	662461
Track	FilteredModels2
ProteinId	662375

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_52	supercontig	scaffold_52:75867..77350 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|662375	gene_10491	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|662375	mRNA_10491-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10491	CDS_10491	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_52:75867..77350+
coding sequence from alignment at scaffold_52:75867..77350+

mRNA sequence

>mRNA_10491 ID=mRNA_10491|Name=jgi.p|Nanoce1779_2|662375|organism=Nannochloropsis oceanica|type=mRNA|length=1484bp
AGCAGATATTGGTTACGACGGCAGGGCACAAAGTTGACCATACGTACCGT
TTTCCCTCTAAATTATTCCTCATTTGACCAGCGGAATGCTTCACTTCTAT
CAAAGGCTCGCCTTTGCTTACATGATGATACAGCTACTTGATGCTCAGCA
GTGTGGAGGGACGTTGGGTATCTGTGTAGCAGATAAATGCTGTAGCCAGT
ACGGTTGGTGTGGTACGACACCAGCTTATTGTGGCACTGGTTGTCAGTCT
GGTTCCTGCATCAGTTCTTCATCAACATTGCCAACTCCATTTCCAACACC
ACCTGCGCCTGCTTCGACATCGGCACCGTCCACTTCCACAGTGTCGACAA
ATGGAGCATGTGGCGCCTCTGCCGGTGTGTGTCCAGCAGGCTTGTGCTGT
AGCCAGTACGGTTGGTGTGGTACGACACCAGCTTATTGTGGCTTTGGATG
TAATAGCTTATACGGGTCGTGCACCTCATCTCCGTCTGCGCCCGCTCCGA
TTCCCACGCCGCCTCCGACACCAGCACCTGCGCCTGCTTCGACATCGGCA
CCGTCCACTTCCACAGTGTCGACAAATGGAGCATGTGGCGCCTCTGCCGG
TGTGTGTCCAGCAGGCTTGTGCTGTAGCCAGTACGGTTGGTGTGGTACGA
CACCAGCTTATTGTGGCTTTGGATGTAATAGCTTATACGGGTCGTGCACC
TCATCTCCGTCTGCGCCCGCTCCGATTCCCACGCCGCCTCCGACACCAGC
ACCTGCGCCTGCTTCGACATCGGCACCGTCCACTTCCACAGTGTCGACAA
ATGGAGCATGTGGCGCCTCTGCCGGTGTGTGTCCAGCAGGCTTGTGCTGT
AGCCAGTACGGTTGGTGTGGTACGACACCAGCTTATTGTGGCTTTGGATG
TAATAGCTTATACGGGTCGTGCACCTCATCTCCGTCTGCGCCCGCTCCGA
TTCCCACGCCGCCTCCGACACCAGCACCTGCGCCTGCTTCGACATCGGCA
CCGTCCACTTCCACAGTGTCGACAAATGGAGCATGTGGCGCCTCTGCCGG
TGTGTGTCCAGCAGGCTTGTGCTGTAGCCAGTACGGTTGGTGTGGTACGA
CACCAGCTTATTGTGGCTTTGGATGTAATAGCTTATACGGGTCGTGCACC
TCATCTCCGTCTGCGCCCGCTCCGATTCCCACGCCGCCTCCGACACCAGC
ACCTGCGCCTGCTTCGACATCGGCACCGTCCACTTCCACAGTGTCGACAA
ATGGAGCATGTGGCGCCTCTGCCGGTGTGTGTCCAGCAGGCTTGTGCTGT
AGCCAGTACGGTTGGTGTGGTACGACACCAGCTTATTGTGGCTTTGGATG
TAATAGCTTATACGGGTCGTGCACCTCATCTCCGTCTGCGCCCGCTCCGA
TTCCCACGCCGCCTCCGACACCAGCACCTGCGCCTGCTTCGACATCGGCA
CCGTCCACTTCCACAGTGTCGGCAAATGGAGCAT

protein sequence of jgi.p|Nanoce1779_2|662375

>mRNA_10491-protein ID=mRNA_10491-protein|Name=jgi.p|Nanoce1779_2|662375|organism=Nannochloropsis oceanica|type=polypeptide|length=466bp
MLHFYQRLAFAYMMIQLLDAQQCGGTLGICVADKCCSQYGWCGTTPAYCG
TGCQSGSCISSSSTLPTPFPTPPAPASTSAPSTSTVSTNGACGASAGVCP
AGLCCSQYGWCGTTPAYCGFGCNSLYGSCTSSPSAPAPIPTPPPTPAPAP
ASTSAPSTSTVSTNGACGASAGVCPAGLCCSQYGWCGTTPAYCGFGCNSL
YGSCTSSPSAPAPIPTPPPTPAPAPASTSAPSTSTVSTNGACGASAGVCP
AGLCCSQYGWCGTTPAYCGFGCNSLYGSCTSSPSAPAPIPTPPPTPAPAP
ASTSAPSTSTVSTNGACGASAGVCPAGLCCSQYGWCGTTPAYCGFGCNSL
YGSCTSSPSAPAPIPTPPPTPAPAPASTSAPSTSTVSTNGACGASAGVCP
AGLCCSQYGWCGTTPAYCGFGCNSLYGSCTSSPSAPAPIPTPPPTPAPAP
ASTSAPSTSTVSANGA

mRNA from alignment at scaffold_52:75867..77350+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10491 ID=mRNA_10491|Name=jgi.p|Nanoce1779_2|662375|organism=Nannochloropsis oceanica|type=mRNA|length=1484bp|location=Sequence derived from alignment at scaffold_52:75867..77350+ (Nannochloropsis oceanica)
AGCAGATATTGGTTACGACGGCAGGGCACAAAGTTGACCATACGTACCGT
TTTCCCTCTAAATTATTCCTCATTTGACCAGCGGAATGCTTCACTTCTAT
CAAAGGCTCGCCTTTGCTTACATGATGATACAGCTACTTGATGCTCAGCA
GTGTGGAGGGACGTTGGGTATCTGTGTAGCAGATAAATGCTGTAGCCAGT
ACGGTTGGTGTGGTACGACACCAGCTTATTGTGGCACTGGTTGTCAGTCT
GGTTCCTGCATCAGTTCTTCATCAACATTGCCAACTCCATTTCCAACACC
ACCTGCGCCTGCTTCGACATCGGCACCGTCCACTTCCACAGTGTCGACAA
ATGGAGCATGTGGCGCCTCTGCCGGTGTGTGTCCAGCAGGCTTGTGCTGT
AGCCAGTACGGTTGGTGTGGTACGACACCAGCTTATTGTGGCTTTGGATG
TAATAGCTTATACGGGTCGTGCACCTCATCTCCGTCTGCGCCCGCTCCGA
TTCCCACGCCGCCTCCGACACCAGCACCTGCGCCTGCTTCGACATCGGCA
CCGTCCACTTCCACAGTGTCGACAAATGGAGCATGTGGCGCCTCTGCCGG
TGTGTGTCCAGCAGGCTTGTGCTGTAGCCAGTACGGTTGGTGTGGTACGA
CACCAGCTTATTGTGGCTTTGGATGTAATAGCTTATACGGGTCGTGCACC
TCATCTCCGTCTGCGCCCGCTCCGATTCCCACGCCGCCTCCGACACCAGC
ACCTGCGCCTGCTTCGACATCGGCACCGTCCACTTCCACAGTGTCGACAA
ATGGAGCATGTGGCGCCTCTGCCGGTGTGTGTCCAGCAGGCTTGTGCTGT
AGCCAGTACGGTTGGTGTGGTACGACACCAGCTTATTGTGGCTTTGGATG
TAATAGCTTATACGGGTCGTGCACCTCATCTCCGTCTGCGCCCGCTCCGA
TTCCCACGCCGCCTCCGACACCAGCACCTGCGCCTGCTTCGACATCGGCA
CCGTCCACTTCCACAGTGTCGACAAATGGAGCATGTGGCGCCTCTGCCGG
TGTGTGTCCAGCAGGCTTGTGCTGTAGCCAGTACGGTTGGTGTGGTACGA
CACCAGCTTATTGTGGCTTTGGATGTAATAGCTTATACGGGTCGTGCACC
TCATCTCCGTCTGCGCCCGCTCCGATTCCCACGCCGCCTCCGACACCAGC
ACCTGCGCCTGCTTCGACATCGGCACCGTCCACTTCCACAGTGTCGACAA
ATGGAGCATGTGGCGCCTCTGCCGGTGTGTGTCCAGCAGGCTTGTGCTGT
AGCCAGTACGGTTGGTGTGGTACGACACCAGCTTATTGTGGCTTTGGATG
TAATAGCTTATACGGGTCGTGCACCTCATCTCCGTCTGCGCCCGCTCCGA
TTCCCACGCCGCCTCCGACACCAGCACCTGCGCCTGCTTCGACATCGGCA
CCGTCCACTTCCACAGTGTCGGCAAATGGAGCAT

Coding sequence (CDS) from alignment at scaffold_52:75867..77350+

>mRNA_10491 ID=mRNA_10491|Name=jgi.p|Nanoce1779_2|662375|organism=Nannochloropsis oceanica|type=CDS|length=1399bp|location=Sequence derived from alignment at scaffold_52:75867..77350+ (Nannochloropsis oceanica)
ATGCTTCACTTCTATCAAAGGCTCGCCTTTGCTTACATGATGATACAGCT
ACTTGATGCTCAGCAGTGTGGAGGGACGTTGGGTATCTGTGTAGCAGATA
AATGCTGTAGCCAGTACGGTTGGTGTGGTACGACACCAGCTTATTGTGGC
ACTGGTTGTCAGTCTGGTTCCTGCATCAGTTCTTCATCAACATTGCCAAC
TCCATTTCCAACACCACCTGCGCCTGCTTCGACATCGGCACCGTCCACTT
CCACAGTGTCGACAAATGGAGCATGTGGCGCCTCTGCCGGTGTGTGTCCA
GCAGGCTTGTGCTGTAGCCAGTACGGTTGGTGTGGTACGACACCAGCTTA
TTGTGGCTTTGGATGTAATAGCTTATACGGGTCGTGCACCTCATCTCCGT
CTGCGCCCGCTCCGATTCCCACGCCGCCTCCGACACCAGCACCTGCGCCT
GCTTCGACATCGGCACCGTCCACTTCCACAGTGTCGACAAATGGAGCATG
TGGCGCCTCTGCCGGTGTGTGTCCAGCAGGCTTGTGCTGTAGCCAGTACG
GTTGGTGTGGTACGACACCAGCTTATTGTGGCTTTGGATGTAATAGCTTA
TACGGGTCGTGCACCTCATCTCCGTCTGCGCCCGCTCCGATTCCCACGCC
GCCTCCGACACCAGCACCTGCGCCTGCTTCGACATCGGCACCGTCCACTT
CCACAGTGTCGACAAATGGAGCATGTGGCGCCTCTGCCGGTGTGTGTCCA
GCAGGCTTGTGCTGTAGCCAGTACGGTTGGTGTGGTACGACACCAGCTTA
TTGTGGCTTTGGATGTAATAGCTTATACGGGTCGTGCACCTCATCTCCGT
CTGCGCCCGCTCCGATTCCCACGCCGCCTCCGACACCAGCACCTGCGCCT
GCTTCGACATCGGCACCGTCCACTTCCACAGTGTCGACAAATGGAGCATG
TGGCGCCTCTGCCGGTGTGTGTCCAGCAGGCTTGTGCTGTAGCCAGTACG
GTTGGTGTGGTACGACACCAGCTTATTGTGGCTTTGGATGTAATAGCTTA
TACGGGTCGTGCACCTCATCTCCGTCTGCGCCCGCTCCGATTCCCACGCC
GCCTCCGACACCAGCACCTGCGCCTGCTTCGACATCGGCACCGTCCACTT
CCACAGTGTCGACAAATGGAGCATGTGGCGCCTCTGCCGGTGTGTGTCCA
GCAGGCTTGTGCTGTAGCCAGTACGGTTGGTGTGGTACGACACCAGCTTA
TTGTGGCTTTGGATGTAATAGCTTATACGGGTCGTGCACCTCATCTCCGT
CTGCGCCCGCTCCGATTCCCACGCCGCCTCCGACACCAGCACCTGCGCCT
GCTTCGACATCGGCACCGTCCACTTCCACAGTGTCGGCAAATGGAGCAT

Synonyms

Publications